RNA–Protein interactions for RNA: ENST00000298173.7

GTF2A1-201, Transcript of general transcription factor IIA subunit 1, humanhuman

TSL 2

Gene GTF2A1, Length 1,677 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-201ENST00000298173 FBLN2P98095 1184 aa39.26■■■■□ 3.88
GTF2A1-201ENST00000298173 RANGAP1P46060 587 aaPredicted RBP39.22■■■■□ 3.87
GTF2A1-201ENST00000298173 NUP160Q12769 1436 aa39.2■■■■□ 3.87
GTF2A1-201ENST00000298173 CEP170Q5SW79 1584 aa39.18■■■■□ 3.86
GTF2A1-201ENST00000298173 CHD1O14646 1710 aa39.18■■■■□ 3.86
GTF2A1-201ENST00000298173 KIAA0586Q9BVV6 1533 aa39.18■■■■□ 3.86
GTF2A1-201ENST00000298173 ARHGAP35Q9NRY4 1499 aa39.16■■■■□ 3.86
GTF2A1-201ENST00000298173 IQGAP2Q13576 1575 aa39.14■■■■□ 3.86
GTF2A1-201ENST00000298173 ARAP1Q96P48 1450 aa39.05■■■■□ 3.84
GTF2A1-201ENST00000298173 EFCAB5A4FU69 1503 aa39.04■■■■□ 3.84
GTF2A1-201ENST00000298173 SAMD9Q5K651 1589 aa38.99■■■■□ 3.83
GTF2A1-201ENST00000298173 UGGT2Q9NYU1 1516 aa38.99■■■■□ 3.83
GTF2A1-201ENST00000298173 VPS8Q8N3P4 1428 aa38.94■■■■□ 3.82
GTF2A1-201ENST00000298173 P3H3Q8IVL6 736 aa38.87■■■■□ 3.81
GTF2A1-201ENST00000298173 JPH4Q96JJ6 628 aa38.87■■■■□ 3.81
GTF2A1-201ENST00000298173 FHOD3Q2V2M9 1422 aa38.83■■■■□ 3.81
GTF2A1-201ENST00000298173 DISP1Q96F81 1524 aa38.82■■■■□ 3.81
GTF2A1-201ENST00000298173 CLASP1Q7Z460 1538 aa38.78■■■■□ 3.8
GTF2A1-201ENST00000298173 KIAA0556O60303 1618 aa38.75■■■■□ 3.79
GTF2A1-201ENST00000298173 SHROOM2Q13796 1616 aa38.73■■■■□ 3.79
GTF2A1-201ENST00000298173 FMN1Q68DA7 1419 aa38.68■■■■□ 3.78
GTF2A1-201ENST00000298173 CARMIL2Q6F5E8 1435 aa38.65■■■■□ 3.78
GTF2A1-201ENST00000298173 OSCARQ8IYS5 282 aa38.63■■■■□ 3.77
GTF2A1-201ENST00000298173 PRG4Q92954 1404 aaPredicted RBP38.62■■■■□ 3.77
GTF2A1-201ENST00000298173 CASKIN1Q8WXD9 1431 aa38.56■■■■□ 3.76
GTF2A1-201ENST00000298173 PCF11O94913 1555 aaKnown RBP38.54■■■■□ 3.76
GTF2A1-201ENST00000298173 FYCO1Q9BQS8 1478 aa38.51■■■■□ 3.76
GTF2A1-201ENST00000298173 APLP2Q06481 763 aa38.46■■■■□ 3.75
GTF2A1-201ENST00000298173 ERCC6L2Q5T890 1561 aa38.44■■■■□ 3.74
GTF2A1-201ENST00000298173 MAP3K1Q13233 1512 aa38.43■■■■□ 3.74
GTF2A1-201ENST00000298173 PPARGC1BQ86YN6 1023 aaKnown RBP38.4■■■■□ 3.74
GTF2A1-201ENST00000298173 TTBK1Q5TCY1 1321 aaPredicted RBP38.34■■■■□ 3.73
GTF2A1-201ENST00000298173 PTPRGP23470 1445 aa38.34■■■■□ 3.73
GTF2A1-201ENST00000298173 TIAM1Q13009 1591 aa38.33■■■■□ 3.73
GTF2A1-201ENST00000298173 ATP1B4Q9UN42 357 aaPredicted RBP38.33■■■■□ 3.73
GTF2A1-201ENST00000298173 LRRIQ1Q96JM4 1722 aa38.33■■■■□ 3.73
GTF2A1-201ENST00000298173 RAPGEF6Q8TEU7 1601 aa38.31■■■■□ 3.72
GTF2A1-201ENST00000298173 HECW1Q76N89 1606 aa38.3■■■■□ 3.72
GTF2A1-201ENST00000298173 CFAP43Q8NDM7 1665 aa38.28■■■■□ 3.72
GTF2A1-201ENST00000298173 PLB1Q6P1J6 1458 aa38.28■■■■□ 3.72
GTF2A1-201ENST00000298173 KANK4Q5T7N3 995 aaPredicted RBP38.28■■■■□ 3.72
GTF2A1-201ENST00000298173 ABCA8O94911 1581 aa38.27■■■■□ 3.72
GTF2A1-201ENST00000298173 NUP153P49790 1475 aaKnown RBP38.22■■■■□ 3.71
GTF2A1-201ENST00000298173 EPRSP07814 1512 aaKnown RBP38.21■■■■□ 3.71
GTF2A1-201ENST00000298173 CCDC18Q5T9S5 1454 aa38.2■■■■□ 3.71
GTF2A1-201ENST00000298173 LRRC9Q6ZRR7 1453 aa38.18■■■■□ 3.7
GTF2A1-201ENST00000298173 UACAQ9BZF9 1416 aa38.13■■■■□ 3.69
GTF2A1-201ENST00000298173 TRIM26Q12899 539 aaPredicted RBP38.1■■■■□ 3.69
GTF2A1-201ENST00000298173 CDK13Q14004 1512 aaKnown RBP38.09■■■■□ 3.69
GTF2A1-201ENST00000298173 ARID3CA6NKF2 412 aa38.01■■■■□ 3.68
GTF2A1-201ENST00000298173 ABCC2Q92887 1545 aa38.01■■■■□ 3.68
GTF2A1-201ENST00000298173 MAGI3Q5TCQ9 1506 aa38■■■■□ 3.67
GTF2A1-201ENST00000298173 UHRF1BP1LA0JNW5 1464 aa38■■■■□ 3.67
GTF2A1-201ENST00000298173 ATP10BO94823 1461 aa38■■■■□ 3.67
GTF2A1-201ENST00000298173 MTUS2Q5JR59 1369 aa37.97■■■■□ 3.67
GTF2A1-201ENST00000298173 ARHGEF11O15085 1522 aa37.97■■■■□ 3.67
GTF2A1-201ENST00000298173 EHBP1L1Q8N3D4 1523 aa37.94■■■■□ 3.66
GTF2A1-201ENST00000298173 CDK11AQ9UQ88 783 aaPredicted RBP37.9■■■■□ 3.66
GTF2A1-201ENST00000298173 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.88■■■■□ 3.66
GTF2A1-201ENST00000298173 HNRNPUL2Q1KMD3 747 aaKnown RBP37.88■■■■□ 3.66
GTF2A1-201ENST00000298173 PCGF6Q9BYE7 350 aa37.88■■■■□ 3.66
GTF2A1-201ENST00000298173 ADCY10Q96PN6 1610 aa37.84■■■■□ 3.65
GTF2A1-201ENST00000298173 KDM5BQ9UGL1 1544 aa37.83■■■■□ 3.65
GTF2A1-201ENST00000298173 SUPT6HQ7KZ85 1726 aaKnown RBP37.82■■■■□ 3.64
GTF2A1-201ENST00000298173 RIMBP3CA6NJZ7 1639 aa37.82■■■■□ 3.64
GTF2A1-201ENST00000298173 RIMBP3BA6NNM3 1639 aa37.82■■■■□ 3.64
GTF2A1-201ENST00000298173 RIMBP3Q9UFD9 1639 aa37.82■■■■□ 3.64
GTF2A1-201ENST00000298173 TROQ12816 1431 aaPredicted RBP37.8■■■■□ 3.64
GTF2A1-201ENST00000298173 PHLDB1Q86UU1 1377 aa37.79■■■■□ 3.64
GTF2A1-201ENST00000298173 NCOA2Q15596 1464 aa37.78■■■■□ 3.64
GTF2A1-201ENST00000298173 PLEKHD1A6NEE1 506 aa37.77■■■■□ 3.64
GTF2A1-201ENST00000298173 ZCCHC11Q5TAX3 1644 aaKnown RBP37.75■■■■□ 3.63
GTF2A1-201ENST00000298173 RRBP1Q9P2E9 1410 aaKnown RBP37.73■■■■□ 3.63
GTF2A1-201ENST00000298173 KIF14Q15058 1648 aa37.61■■■■□ 3.61
GTF2A1-201ENST00000298173 CCNB3Q8WWL7 1395 aa37.61■■■■□ 3.61
GTF2A1-201ENST00000298173 MYOM3Q5VTT5 1437 aa37.6■■■■□ 3.61
GTF2A1-201ENST00000298173 CYB5RLQ6IPT4 315 aa37.6■■■■□ 3.61
GTF2A1-201ENST00000298173 FGD6Q6ZV73 1430 aa37.55■■■■□ 3.6
GTF2A1-201ENST00000298173 ABCC10Q5T3U5 1492 aa37.53■■■■□ 3.6
GTF2A1-201ENST00000298173 NPM1P06748 294 aaKnown RBP eCLIP37.5■■■■□ 3.59
GTF2A1-201ENST00000298173 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP37.49■■■■□ 3.59
GTF2A1-201ENST00000298173 MIA2Q96PC5 1412 aa37.47■■■■□ 3.59
GTF2A1-201ENST00000298173 GPATCH8Q9UKJ3 1502 aaKnown RBP37.45■■■■□ 3.59
GTF2A1-201ENST00000298173 WDR7Q9Y4E6 1490 aa37.45■■■■□ 3.58
GTF2A1-201ENST00000298173 ASXL2Q76L83 1435 aa37.42■■■■□ 3.58
GTF2A1-201ENST00000298173 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP37.4■■■■□ 3.585e-6■■■□□ 19
GTF2A1-201ENST00000298173 PTPN23Q9H3S7 1636 aa37.39■■■■□ 3.58
GTF2A1-201ENST00000298173 CDC42BPAQ5VT25 1732 aa37.39■■■■□ 3.58
GTF2A1-201ENST00000298173 KCNH8Q96L42 1107 aa37.39■■■■□ 3.58
GTF2A1-201ENST00000298173 ITSN2Q9NZM3 1697 aa37.39■■■■□ 3.58
GTF2A1-201ENST00000298173 TCOF1Q13428 1488 aaKnown RBP37.39■■■■□ 3.58
GTF2A1-201ENST00000298173 FAM50AQ14320 339 aaKnown RBP37.37■■■■□ 3.57
GTF2A1-201ENST00000298173 TTC37Q6PGP7 1564 aa37.34■■■■□ 3.57
GTF2A1-201ENST00000298173 CFDP1Q9UEE9 299 aaPredicted RBP37.31■■■■□ 3.56
GTF2A1-201ENST00000298173 MAPKBP1O60336 1514 aa37.29■■■■□ 3.56
GTF2A1-201ENST00000298173 CDC42BPBQ9Y5S2 1711 aa37.27■■■■□ 3.56
GTF2A1-201ENST00000298173 PREX2Q70Z35 1606 aa37.26■■■■□ 3.55
GTF2A1-201ENST00000298173 MYO5CQ9NQX4 1742 aa37.22■■■■□ 3.55
GTF2A1-201ENST00000298173 ABCA9Q8IUA7 1624 aa37.22■■■■□ 3.55
GTF2A1-201ENST00000298173 ZNF644Q9H582 1327 aaPredicted RBP37.22■■■■□ 3.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms