RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 CLSPNQ9HAW4 1339 aa21.46■■□□□ 1.03
SHH-201ENST00000297261 MTUS2Q5JR59 1369 aa21.45■■□□□ 1.02
SHH-201ENST00000297261 FGD5Q6ZNL6 1462 aa21.44■■□□□ 1.02
SHH-201ENST00000297261 MYT1LQ9UL68 1186 aa21.42■■□□□ 1.02
SHH-201ENST00000297261 NESP48681 1621 aa21.39■■□□□ 1.01
SHH-201ENST00000297261 KANK4Q5T7N3 995 aaPredicted RBP21.37■■□□□ 1.01
SHH-201ENST00000297261 ZNF777Q9ULD5 760 aaPredicted RBP21.37■■□□□ 1.01
SHH-201ENST00000297261 TOP2BQ02880 1626 aa21.35■■□□□ 1.01
SHH-201ENST00000297261 CUX1P39880 1505 aa21.35■■□□□ 1.01
SHH-201ENST00000297261 RAD54L2Q9Y4B4 1467 aa21.35■■□□□ 1.01
SHH-201ENST00000297261 IGF1RP08069 1367 aa21.35■■□□□ 1.01
SHH-201ENST00000297261 DDX10Q13206 875 aaKnown RBP21.34■■□□□ 1.01
SHH-201ENST00000297261 FHAD1B1AJZ9 1412 aa21.33■■□□□ 1
SHH-201ENST00000297261 ANP32EQ9BTT0 268 aa21.31■■□□□ 1
SHH-201ENST00000297261 DNAJC5BQ9UF47 199 aa21.29■■□□□ 1
SHH-201ENST00000297261 CHIC2Q9UKJ5 165 aa21.28■■□□□ 1
SHH-201ENST00000297261 KIF21BO75037 1637 aa21.25■□□□□ 0.99
SHH-201ENST00000297261 CCNB3Q8WWL7 1395 aa21.21■□□□□ 0.99
SHH-201ENST00000297261 HNRNPUQ00839 825 aaKnown RBP eCLIP21.2■□□□□ 0.98
SHH-201ENST00000297261 FHOD3Q2V2M9 1422 aa21.2■□□□□ 0.98
SHH-201ENST00000297261 ANP32AP39687 249 aaKnown RBP21.19■□□□□ 0.98
SHH-201ENST00000297261 NBR1Q14596 966 aa21.18■□□□□ 0.98
SHH-201ENST00000297261 NPM2Q86SE8 214 aaKnown RBP21.16■□□□□ 0.98
SHH-201ENST00000297261 PRXQ9BXM0 1461 aa21.16■□□□□ 0.98
SHH-201ENST00000297261 EIF5BO60841 1220 aaKnown RBP21.15■□□□□ 0.98
SHH-201ENST00000297261 IRX6P78412 446 aaPredicted RBP21.15■□□□□ 0.98
SHH-201ENST00000297261 GAPVD1Q14C86 1478 aa21.15■□□□□ 0.98
SHH-201ENST00000297261 TOPBP1Q92547 1522 aa21.15■□□□□ 0.98
SHH-201ENST00000297261 ERICH3Q5RHP9 1530 aa21.12■□□□□ 0.97
SHH-201ENST00000297261 RRP7BPQ9NSQ0 103 aa21.12■□□□□ 0.97
SHH-201ENST00000297261 POLA1P09884 1462 aaPredicted RBP21.11■□□□□ 0.97
SHH-201ENST00000297261 SUPT16HQ9Y5B9 1047 aaKnown RBP21.11■□□□□ 0.97
SHH-201ENST00000297261 FMN1Q68DA7 1419 aa21.11■□□□□ 0.97
SHH-201ENST00000297261 BCL11AQ9H165 835 aa21.09■□□□□ 0.97
SHH-201ENST00000297261 HIRIP3Q9BW71 556 aaPredicted RBP21.08■□□□□ 0.97
SHH-201ENST00000297261 ZNF326Q5BKZ1 582 aaKnown RBP21.08■□□□□ 0.96
SHH-201ENST00000297261 PLEKHD1A6NEE1 506 aa21.06■□□□□ 0.96
SHH-201ENST00000297261 TONSLQ96HA7 1378 aa21.04■□□□□ 0.96
SHH-201ENST00000297261 AQRO60306 1485 aaKnown RBP eCLIP21.04■□□□□ 0.96
SHH-201ENST00000297261 DNMBPQ6XZF7 1577 aa21.04■□□□□ 0.96
SHH-201ENST00000297261 ARAP1Q96P48 1450 aa21.02■□□□□ 0.96
SHH-201ENST00000297261 ARHGAP35Q9NRY4 1499 aa21.01■□□□□ 0.95
SHH-201ENST00000297261 FAM9BQ8IZU0 186 aa21.01■□□□□ 0.95
SHH-201ENST00000297261 BIVM-ERCC5R4GMW8 1640 aa21.01■□□□□ 0.95
SHH-201ENST00000297261 LAMC3Q9Y6N6 1575 aa21■□□□□ 0.95
SHH-201ENST00000297261 CFDP1Q9UEE9 299 aaPredicted RBP20.98■□□□□ 0.95
SHH-201ENST00000297261 TSPY4P0CV99 314 aa20.96■□□□□ 0.95
SHH-201ENST00000297261 TSPY10P0CW01 314 aa20.96■□□□□ 0.95
SHH-201ENST00000297261 KCNH8Q96L42 1107 aa20.95■□□□□ 0.94
SHH-201ENST00000297261 MRC2Q9UBG0 1479 aa20.94■□□□□ 0.94
SHH-201ENST00000297261 ZBTB47Q9UFB7 747 aaPredicted RBP20.92■□□□□ 0.94
SHH-201ENST00000297261 ABCA10Q8WWZ4 1543 aa20.91■□□□□ 0.94
SHH-201ENST00000297261 CARMIL2Q6F5E8 1435 aa20.9■□□□□ 0.94
SHH-201ENST00000297261 SIN3AQ96ST3 1273 aa20.9■□□□□ 0.94
SHH-201ENST00000297261 CCDC136Q96JN2 1154 aa20.89■□□□□ 0.93
SHH-201ENST00000297261 JPH4Q96JJ6 628 aa20.88■□□□□ 0.93
SHH-201ENST00000297261 NPM1P06748 294 aaKnown RBP eCLIP20.88■□□□□ 0.93
SHH-201ENST00000297261 SETD5Q9C0A6 1442 aa20.88■□□□□ 0.93
SHH-201ENST00000297261 URB2Q14146 1524 aaKnown RBP20.87■□□□□ 0.93
SHH-201ENST00000297261 RAB3GAP2Q9H2M9 1393 aa20.87■□□□□ 0.93
SHH-201ENST00000297261 GRIN2BQ13224 1484 aa20.85■□□□□ 0.93
SHH-201ENST00000297261 SLC4A1APQ9BWU0 796 aaKnown RBP20.85■□□□□ 0.93
SHH-201ENST00000297261 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.83■□□□□ 0.922e-7■□□□□ 9.7
SHH-201ENST00000297261 TSHZ2Q9NRE2 1034 aa20.8■□□□□ 0.92
SHH-201ENST00000297261 SALL2Q9Y467 1007 aaPredicted RBP20.8■□□□□ 0.92
SHH-201ENST00000297261 IFT140Q96RY7 1462 aa20.79■□□□□ 0.92
SHH-201ENST00000297261 RBM19Q9Y4C8 960 aaKnown RBP20.78■□□□□ 0.92
SHH-201ENST00000297261 MRS2Q9HD23 443 aa20.78■□□□□ 0.92
SHH-201ENST00000297261 LRRC9Q6ZRR7 1453 aa20.76■□□□□ 0.91
SHH-201ENST00000297261 PHLDB1Q86UU1 1377 aa20.75■□□□□ 0.91
SHH-201ENST00000297261 CASKIN1Q8WXD9 1431 aa20.74■□□□□ 0.91
SHH-201ENST00000297261 DHX57Q6P158 1386 aaKnown RBP20.71■□□□□ 0.91
SHH-201ENST00000297261 RTN4Q9NQC3 1192 aaKnown RBP20.7■□□□□ 0.9
SHH-201ENST00000297261 EFCAB5A4FU69 1503 aa20.69■□□□□ 0.9
SHH-201ENST00000297261 CCDC18Q5T9S5 1454 aa20.69■□□□□ 0.9
SHH-201ENST00000297261 SENP3-EIF4A1A0A087X0R7 540 aa20.69■□□□□ 0.9
SHH-201ENST00000297261 FYCO1Q9BQS8 1478 aa20.67■□□□□ 0.9
SHH-201ENST00000297261 SNAPC4Q5SXM2 1469 aa20.67■□□□□ 0.9
SHH-201ENST00000297261 KDM2AQ9Y2K7 1162 aa20.65■□□□□ 0.9
SHH-201ENST00000297261 CUL7Q14999 1698 aa20.65■□□□□ 0.9
SHH-201ENST00000297261 RRBP1Q9P2E9 1410 aaKnown RBP20.63■□□□□ 0.89
SHH-201ENST00000297261 ARXQ96QS3 562 aa20.63■□□□□ 0.89
SHH-201ENST00000297261 CANXP27824 592 aaKnown RBP20.62■□□□□ 0.89
SHH-201ENST00000297261 TIAM1Q13009 1591 aa20.62■□□□□ 0.89
SHH-201ENST00000297261 TMC1Q8TDI8 760 aa20.61■□□□□ 0.89
SHH-201ENST00000297261 FGD6Q6ZV73 1430 aa20.61■□□□□ 0.89
SHH-201ENST00000297261 FOXD1Q16676 465 aa20.6■□□□□ 0.89
SHH-201ENST00000297261 PTPRGP23470 1445 aa20.6■□□□□ 0.89
SHH-201ENST00000297261 ZNF608Q9ULD9 1512 aaPredicted RBP20.6■□□□□ 0.89
SHH-201ENST00000297261 DEKP35659 375 aaKnown RBP20.59■□□□□ 0.89
SHH-201ENST00000297261 B4GALNT3Q6L9W6 998 aa20.58■□□□□ 0.89
SHH-201ENST00000297261 EIF4G2P78344 907 aaKnown RBP eCLIP20.58■□□□□ 0.88
SHH-201ENST00000297261 MYOM3Q5VTT5 1437 aa20.57■□□□□ 0.88
SHH-201ENST00000297261 NCOA2Q15596 1464 aa20.56■□□□□ 0.88
SHH-201ENST00000297261 TIMELESSQ9UNS1 1208 aa20.55■□□□□ 0.88
SHH-201ENST00000297261 PRDM2Q13029 1718 aa20.55■□□□□ 0.88
SHH-201ENST00000297261 PCF11O94913 1555 aaKnown RBP20.54■□□□□ 0.88
SHH-201ENST00000297261 MPHOSPH9Q99550 1183 aa20.54■□□□□ 0.88
SHH-201ENST00000297261 NOP58Q9Y2X3 529 aaKnown RBP20.54■□□□□ 0.88
SHH-201ENST00000297261 PPP4R2Q9NY27 417 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms