RNA–Protein interactions for RNA: ENST00000294129.6

NCKIPSD-201, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,989 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-201ENST00000294129 URB2Q14146 1524 aaKnown RBP23.28■■□□□ 1.32
NCKIPSD-201ENST00000294129 YTHDC1Q96MU7 727 aaKnown RBP23.28■■□□□ 1.32
NCKIPSD-201ENST00000294129 TIAM1Q13009 1591 aa23.26■■□□□ 1.31
NCKIPSD-201ENST00000294129 ACIN1Q9UKV3 1341 aaKnown RBP23.23■■□□□ 1.31
NCKIPSD-201ENST00000294129 PELP1Q8IZL8 1130 aaKnown RBP23.22■■□□□ 1.31
NCKIPSD-201ENST00000294129 LAMC3Q9Y6N6 1575 aa23.22■■□□□ 1.31
NCKIPSD-201ENST00000294129 FHAD1B1AJZ9 1412 aa23.21■■□□□ 1.31
NCKIPSD-201ENST00000294129 PCF11O94913 1555 aaKnown RBP23.21■■□□□ 1.31
NCKIPSD-201ENST00000294129 LRRC9Q6ZRR7 1453 aa23.2■■□□□ 1.3
NCKIPSD-201ENST00000294129 PHLDB1Q86UU1 1377 aa23.2■■□□□ 1.3
NCKIPSD-201ENST00000294129 MIER1Q8N108 512 aa23.2■■□□□ 1.3
NCKIPSD-201ENST00000294129 PDS5BQ9NTI5 1447 aa23.18■■□□□ 1.3
NCKIPSD-201ENST00000294129 CENPBP07199 599 aaPredicted RBP23.17■■□□□ 1.3
NCKIPSD-201ENST00000294129 RAB3GAP2Q9H2M9 1393 aa23.14■■□□□ 1.29
NCKIPSD-201ENST00000294129 CUL7Q14999 1698 aa23.12■■□□□ 1.29
NCKIPSD-201ENST00000294129 CLSPNQ9HAW4 1339 aa23.12■■□□□ 1.29
NCKIPSD-201ENST00000294129 GAPVD1Q14C86 1478 aa23.12■■□□□ 1.29
NCKIPSD-201ENST00000294129 KIF21AQ7Z4S6 1674 aa23.11■■□□□ 1.29
NCKIPSD-201ENST00000294129 MAP3K1Q13233 1512 aa23.08■■□□□ 1.29
NCKIPSD-201ENST00000294129 CTTNBP2Q8WZ74 1663 aa23.07■■□□□ 1.28
NCKIPSD-201ENST00000294129 GTF3C3Q9Y5Q9 886 aa23.05■■□□□ 1.28
NCKIPSD-201ENST00000294129 WDR97A6NE52 1622 aa23.05■■□□□ 1.28
NCKIPSD-201ENST00000294129 EFCAB5A4FU69 1503 aa23.04■■□□□ 1.28
NCKIPSD-201ENST00000294129 CFAP43Q8NDM7 1665 aa23.03■■□□□ 1.28
NCKIPSD-201ENST00000294129 FYCO1Q9BQS8 1478 aa23.02■■□□□ 1.28
NCKIPSD-201ENST00000294129 CASKIN1Q8WXD9 1431 aa23.02■■□□□ 1.28
NCKIPSD-201ENST00000294129 ABCA5Q8WWZ7 1642 aa23.01■■□□□ 1.27
NCKIPSD-201ENST00000294129 SETD5Q9C0A6 1442 aa23.01■■□□□ 1.27
NCKIPSD-201ENST00000294129 MTUS2Q5JR59 1369 aa22.99■■□□□ 1.27
NCKIPSD-201ENST00000294129 ARID3CA6NKF2 412 aa22.99■■□□□ 1.27
NCKIPSD-201ENST00000294129 FMN1Q68DA7 1419 aa22.99■■□□□ 1.27
NCKIPSD-201ENST00000294129 AQRO60306 1485 aaKnown RBP eCLIP22.97■■□□□ 1.276e-7■■■■■ 27.8
NCKIPSD-201ENST00000294129 SIN3AQ96ST3 1273 aa22.97■■□□□ 1.27
NCKIPSD-201ENST00000294129 SNAPC4Q5SXM2 1469 aa22.91■■□□□ 1.26
NCKIPSD-201ENST00000294129 MAPKBP1O60336 1514 aa22.91■■□□□ 1.26
NCKIPSD-201ENST00000294129 TARBP1Q13395 1621 aaKnown RBP22.89■■□□□ 1.26
NCKIPSD-201ENST00000294129 FGD6Q6ZV73 1430 aa22.85■■□□□ 1.25
NCKIPSD-201ENST00000294129 SAMD9Q5K651 1589 aa22.84■■□□□ 1.25
NCKIPSD-201ENST00000294129 LRRIQ1Q96JM4 1722 aa22.82■■□□□ 1.24
NCKIPSD-201ENST00000294129 MRC2Q9UBG0 1479 aa22.81■■□□□ 1.24
NCKIPSD-201ENST00000294129 PBRM1Q86U86 1689 aa22.8■■□□□ 1.24
NCKIPSD-201ENST00000294129 NCOA2Q15596 1464 aa22.79■■□□□ 1.24
NCKIPSD-201ENST00000294129 ZNF608Q9ULD9 1512 aaPredicted RBP22.79■■□□□ 1.24
NCKIPSD-201ENST00000294129 GRIN2BQ13224 1484 aa22.78■■□□□ 1.24
NCKIPSD-201ENST00000294129 CHIC2Q9UKJ5 165 aa22.77■■□□□ 1.24
NCKIPSD-201ENST00000294129 HIRIP3Q9BW71 556 aaPredicted RBP22.77■■□□□ 1.23
NCKIPSD-201ENST00000294129 PTPRKQ15262 1439 aa22.75■■□□□ 1.23
NCKIPSD-201ENST00000294129 RRP7BPQ9NSQ0 103 aa22.72■■□□□ 1.23
NCKIPSD-201ENST00000294129 MYOM3Q5VTT5 1437 aa22.72■■□□□ 1.23
NCKIPSD-201ENST00000294129 IQGAP2Q13576 1575 aa22.71■■□□□ 1.23
NCKIPSD-201ENST00000294129 ADAMTS12P58397 1594 aa22.7■■□□□ 1.23
NCKIPSD-201ENST00000294129 CCDC18Q5T9S5 1454 aa22.69■■□□□ 1.22
NCKIPSD-201ENST00000294129 FBLN2P98095 1184 aa22.69■■□□□ 1.22
NCKIPSD-201ENST00000294129 MAGI3Q5TCQ9 1506 aa22.69■■□□□ 1.22
NCKIPSD-201ENST00000294129 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.69■■□□□ 1.22
NCKIPSD-201ENST00000294129 SUPT6HQ7KZ85 1726 aaKnown RBP22.68■■□□□ 1.22
NCKIPSD-201ENST00000294129 CDK13Q14004 1512 aaKnown RBP22.68■■□□□ 1.22
NCKIPSD-201ENST00000294129 EHBP1L1Q8N3D4 1523 aa22.66■■□□□ 1.22
NCKIPSD-201ENST00000294129 ERCC6Q03468 1493 aa22.66■■□□□ 1.22
NCKIPSD-201ENST00000294129 DDX10Q13206 875 aaKnown RBP22.65■■□□□ 1.22
NCKIPSD-201ENST00000294129 IFT140Q96RY7 1462 aa22.62■■□□□ 1.21
NCKIPSD-201ENST00000294129 EPRSP07814 1512 aaKnown RBP22.62■■□□□ 1.21
NCKIPSD-201ENST00000294129 TRIM52Q96A61 297 aa22.62■■□□□ 1.21
NCKIPSD-201ENST00000294129 THOC2Q8NI27 1593 aaKnown RBP22.61■■□□□ 1.21
NCKIPSD-201ENST00000294129 HFM1A2PYH4 1435 aa22.61■■□□□ 1.21
NCKIPSD-201ENST00000294129 TONSLQ96HA7 1378 aa22.61■■□□□ 1.21
NCKIPSD-201ENST00000294129 PTPN23Q9H3S7 1636 aa22.61■■□□□ 1.21
NCKIPSD-201ENST00000294129 HECW1Q76N89 1606 aa22.6■■□□□ 1.21
NCKIPSD-201ENST00000294129 KCNH8Q96L42 1107 aa22.6■■□□□ 1.21
NCKIPSD-201ENST00000294129 NAIPQ13075 1403 aa22.6■■□□□ 1.21
NCKIPSD-201ENST00000294129 UGGT2Q9NYU1 1516 aa22.59■■□□□ 1.21
NCKIPSD-201ENST00000294129 PPP1R15AO75807 674 aaPredicted RBP22.59■■□□□ 1.21
NCKIPSD-201ENST00000294129 CHMP7Q8WUX9 453 aaPredicted RBP22.57■■□□□ 1.2
NCKIPSD-201ENST00000294129 WDR62O43379 1518 aa22.55■■□□□ 1.2
NCKIPSD-201ENST00000294129 UACAQ9BZF9 1416 aa22.55■■□□□ 1.2
NCKIPSD-201ENST00000294129 EIF4G3O43432 1585 aaKnown RBP22.52■■□□□ 1.2
NCKIPSD-201ENST00000294129 TIMELESSQ9UNS1 1208 aa22.5■■□□□ 1.19
NCKIPSD-201ENST00000294129 GRIN2AQ12879 1464 aa22.49■■□□□ 1.19
NCKIPSD-201ENST00000294129 KIAA0586Q9BVV6 1533 aa22.49■■□□□ 1.19
NCKIPSD-201ENST00000294129 ZNF644Q9H582 1327 aaPredicted RBP22.49■■□□□ 1.19
NCKIPSD-201ENST00000294129 ARHGEF11O15085 1522 aa22.49■■□□□ 1.19
NCKIPSD-201ENST00000294129 FOXD1Q16676 465 aa22.49■■□□□ 1.19
NCKIPSD-201ENST00000294129 DISP1Q96F81 1524 aa22.47■■□□□ 1.19
NCKIPSD-201ENST00000294129 KIAA0556O60303 1618 aa22.45■■□□□ 1.18
NCKIPSD-201ENST00000294129 ZNF777Q9ULD5 760 aaPredicted RBP22.43■■□□□ 1.18
NCKIPSD-201ENST00000294129 KDM6BO15054 1643 aa22.42■■□□□ 1.18
NCKIPSD-201ENST00000294129 NUP153P49790 1475 aaKnown RBP22.41■■□□□ 1.18
NCKIPSD-201ENST00000294129 TCOF1Q13428 1488 aaKnown RBP22.41■■□□□ 1.18
NCKIPSD-201ENST00000294129 CDK11AQ9UQ88 783 aaPredicted RBP22.41■■□□□ 1.18
NCKIPSD-201ENST00000294129 MPHOSPH9Q99550 1183 aa22.38■■□□□ 1.17
NCKIPSD-201ENST00000294129 PLB1Q6P1J6 1458 aa22.38■■□□□ 1.17
NCKIPSD-201ENST00000294129 PRG4Q92954 1404 aaPredicted RBP22.37■■□□□ 1.17
NCKIPSD-201ENST00000294129 MIA2Q96PC5 1412 aa22.37■■□□□ 1.17
NCKIPSD-201ENST00000294129 JPH4Q96JJ6 628 aa22.36■■□□□ 1.17
NCKIPSD-201ENST00000294129 RAPGEF6Q8TEU7 1601 aa22.36■■□□□ 1.17
NCKIPSD-201ENST00000294129 CEP170Q5SW79 1584 aa22.34■■□□□ 1.17
NCKIPSD-201ENST00000294129 CFDP1Q9UEE9 299 aaPredicted RBP22.33■■□□□ 1.16
NCKIPSD-201ENST00000294129 SYNJ2O15056 1496 aa22.33■■□□□ 1.16
NCKIPSD-201ENST00000294129 MAGI1Q96QZ7 1491 aaPredicted RBP22.33■■□□□ 1.16
NCKIPSD-201ENST00000294129 ANP32CO43423 234 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms