RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 RAPGEF2Q9Y4G8 1499 aa10.87□□□□□ -0.67
CD44-204ENST00000279452 PHF23Q9BUL5 403 aaPredicted RBP10.86□□□□□ -0.67
CD44-204ENST00000279452 EEA1Q15075 1411 aa10.85□□□□□ -0.67
CD44-204ENST00000279452 CYB5RLQ6IPT4 315 aa10.85□□□□□ -0.67
CD44-204ENST00000279452 CSRNP3Q8WYN3 585 aa10.84□□□□□ -0.67
CD44-204ENST00000279452 KIAA0586Q9BVV6 1533 aa10.83□□□□□ -0.68
CD44-204ENST00000279452 PRG4Q92954 1404 aaPredicted RBP10.83□□□□□ -0.68
CD44-204ENST00000279452 ARAP1Q96P48 1450 aa10.82□□□□□ -0.68
CD44-204ENST00000279452 EHMT2Q96KQ7 1210 aa10.82□□□□□ -0.68
CD44-204ENST00000279452 SHROOM2Q13796 1616 aa10.81□□□□□ -0.68
CD44-204ENST00000279452 JPH4Q96JJ6 628 aa10.81□□□□□ -0.68
CD44-204ENST00000279452 IQGAP2Q13576 1575 aa10.81□□□□□ -0.68
CD44-204ENST00000279452 ERCC6L2Q5T890 1561 aa10.81□□□□□ -0.68
CD44-204ENST00000279452 PRXQ9BXM0 1461 aa10.81□□□□□ -0.68
CD44-204ENST00000279452 TTBK1Q5TCY1 1321 aaPredicted RBP10.8□□□□□ -0.68
CD44-204ENST00000279452 CTTNBP2Q8WZ74 1663 aa10.76□□□□□ -0.69
CD44-204ENST00000279452 CARMIL2Q6F5E8 1435 aa10.75□□□□□ -0.69
CD44-204ENST00000279452 RANGAP1P46060 587 aaPredicted RBP10.75□□□□□ -0.69
CD44-204ENST00000279452 KIF21BO75037 1637 aa10.74□□□□□ -0.69
CD44-204ENST00000279452 UBTFP17480 764 aaKnown RBP10.72□□□□□ -0.69
CD44-204ENST00000279452 GOLGA3Q08378 1498 aa10.72□□□□□ -0.69
CD44-204ENST00000279452 UGGT2Q9NYU1 1516 aa10.71□□□□□ -0.69
CD44-204ENST00000279452 TNIKQ9UKE5 1360 aa10.7□□□□□ -0.7
CD44-204ENST00000279452 KIAA0556O60303 1618 aa10.69□□□□□ -0.7
CD44-204ENST00000279452 DISP1Q96F81 1524 aa10.69□□□□□ -0.7
CD44-204ENST00000279452 PTPRGP23470 1445 aa10.69□□□□□ -0.7
CD44-204ENST00000279452 P3H3Q8IVL6 736 aa10.68□□□□□ -0.7
CD44-204ENST00000279452 TRHP20396 242 aaPredicted RBP10.67□□□□□ -0.7
CD44-204ENST00000279452 NPM1P06748 294 aaKnown RBP eCLIP10.66□□□□□ -0.7
CD44-204ENST00000279452 ADCY10Q96PN6 1610 aa10.62□□□□□ -0.71
CD44-204ENST00000279452 FHOD3Q2V2M9 1422 aa10.61□□□□□ -0.71
CD44-204ENST00000279452 UACAQ9BZF9 1416 aa10.61□□□□□ -0.71
CD44-204ENST00000279452 SAMD9Q5K651 1589 aa10.6□□□□□ -0.71
CD44-204ENST00000279452 EFCAB5A4FU69 1503 aa10.6□□□□□ -0.71
CD44-204ENST00000279452 PLB1Q6P1J6 1458 aa10.6□□□□□ -0.71
CD44-204ENST00000279452 ABCC2Q92887 1545 aa10.59□□□□□ -0.71
CD44-204ENST00000279452 ARID3CA6NKF2 412 aa10.59□□□□□ -0.71
CD44-204ENST00000279452 UHRF1BP1LA0JNW5 1464 aa10.56□□□□□ -0.72
CD44-204ENST00000279452 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.55□□□□□ -0.72
CD44-204ENST00000279452 HNRNPUL2Q1KMD3 747 aaKnown RBP10.55□□□□□ -0.72
CD44-204ENST00000279452 ATP1B4Q9UN42 357 aaPredicted RBP10.55□□□□□ -0.72
CD44-204ENST00000279452 ABCA8O94911 1581 aa10.55□□□□□ -0.72
CD44-204ENST00000279452 MAPKBP1O60336 1514 aa10.54□□□□□ -0.72
CD44-204ENST00000279452 ZCCHC11Q5TAX3 1644 aaKnown RBP10.54□□□□□ -0.72
CD44-204ENST00000279452 ARHGAP35Q9NRY4 1499 aa10.54□□□□□ -0.72
CD44-204ENST00000279452 RAPGEF6Q8TEU7 1601 aa10.53□□□□□ -0.72
CD44-204ENST00000279452 CLIP1P30622 1438 aa10.52□□□□□ -0.73
CD44-204ENST00000279452 ASXL2Q76L83 1435 aa10.52□□□□□ -0.73
CD44-204ENST00000279452 LOC105371045A0A1W2PR82 267 aa10.52□□□□□ -0.73
CD44-204ENST00000279452 FAM69CQ0P6D2 419 aa10.52□□□□□ -0.73
CD44-204ENST00000279452 KDM5BQ9UGL1 1544 aa10.52□□□□□ -0.73
CD44-204ENST00000279452 FMN1Q68DA7 1419 aa10.5□□□□□ -0.73
CD44-204ENST00000279452 ABCC10Q5T3U5 1492 aa10.5□□□□□ -0.73
CD44-204ENST00000279452 DIP2BQ9P265 1576 aa10.49□□□□□ -0.73
CD44-204ENST00000279452 CEP162Q5TB80 1403 aa10.49□□□□□ -0.73
CD44-204ENST00000279452 NUP153P49790 1475 aaKnown RBP10.49□□□□□ -0.73
CD44-204ENST00000279452 WDR7Q9Y4E6 1490 aa10.48□□□□□ -0.73
CD44-204ENST00000279452 HECW1Q76N89 1606 aa10.47□□□□□ -0.73
CD44-204ENST00000279452 KCNH8Q96L42 1107 aa10.47□□□□□ -0.73
CD44-204ENST00000279452 ATP10BO94823 1461 aa10.47□□□□□ -0.73
CD44-204ENST00000279452 KIF13AQ9H1H9 1805 aa10.45□□□□□ -0.74
CD44-204ENST00000279452 PCF11O94913 1555 aaKnown RBP10.45□□□□□ -0.74
CD44-204ENST00000279452 CDK13Q14004 1512 aaKnown RBP10.45□□□□□ -0.74
CD44-204ENST00000279452 EPRSP07814 1512 aaKnown RBP10.44□□□□□ -0.74
CD44-204ENST00000279452 PLEKHD1A6NEE1 506 aa10.42□□□□□ -0.74
CD44-204ENST00000279452 CASKIN1Q8WXD9 1431 aa10.41□□□□□ -0.74
CD44-204ENST00000279452 GLI2P10070 1586 aa10.41□□□□□ -0.74
CD44-204ENST00000279452 FYCO1Q9BQS8 1478 aa10.41□□□□□ -0.74
CD44-204ENST00000279452 TSPOAP1O95153 1857 aa10.4□□□□□ -0.74
CD44-204ENST00000279452 CDK11AQ9UQ88 783 aaPredicted RBP10.4□□□□□ -0.74
CD44-204ENST00000279452 CCDC18Q5T9S5 1454 aa10.39□□□□□ -0.75
CD44-204ENST00000279452 MAP3K4Q9Y6R4 1608 aa10.38□□□□□ -0.75
CD44-204ENST00000279452 CD109Q6YHK3 1445 aa10.38□□□□□ -0.75
CD44-204ENST00000279452 TEX14Q8IWB6 1497 aa10.37□□□□□ -0.75
CD44-204ENST00000279452 CFAP43Q8NDM7 1665 aa10.36□□□□□ -0.75
CD44-204ENST00000279452 KDM6BO15054 1643 aa10.35□□□□□ -0.75
CD44-204ENST00000279452 KIF14Q15058 1648 aa10.35□□□□□ -0.75
CD44-204ENST00000279452 LRRIQ1Q96JM4 1722 aa10.35□□□□□ -0.75
CD44-204ENST00000279452 VPS8Q8N3P4 1428 aa10.34□□□□□ -0.75
CD44-204ENST00000279452 ABCA9Q8IUA7 1624 aa10.34□□□□□ -0.75
CD44-204ENST00000279452 TROQ12816 1431 aaPredicted RBP10.33□□□□□ -0.76
CD44-204ENST00000279452 TTC37Q6PGP7 1564 aa10.33□□□□□ -0.76
CD44-204ENST00000279452 PPRC1Q5VV67 1664 aaKnown RBP10.33□□□□□ -0.76
CD44-204ENST00000279452 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.33□□□□□ -0.76
CD44-204ENST00000279452 MTUS2Q5JR59 1369 aa10.32□□□□□ -0.76
CD44-204ENST00000279452 MAGI3Q5TCQ9 1506 aa10.32□□□□□ -0.76
CD44-204ENST00000279452 APLP2Q06481 763 aa10.3□□□□□ -0.76
CD44-204ENST00000279452 FANCAO15360 1455 aa10.29□□□□□ -0.76
CD44-204ENST00000279452 FOXD1Q16676 465 aa10.28□□□□□ -0.76
CD44-204ENST00000279452 ARHGAP5Q13017 1502 aa10.28□□□□□ -0.76
CD44-204ENST00000279452 EHBP1L1Q8N3D4 1523 aa10.28□□□□□ -0.76
CD44-204ENST00000279452 TIAM1Q13009 1591 aa10.27□□□□□ -0.76
CD44-204ENST00000279452 CFAP74Q9C0B2 1584 aa10.27□□□□□ -0.76
CD44-204ENST00000279452 MYO5CQ9NQX4 1742 aa10.27□□□□□ -0.77
CD44-204ENST00000279452 NEO1Q92859 1461 aa10.26□□□□□ -0.77
CD44-204ENST00000279452 PLCH2O75038 1416 aa10.25□□□□□ -0.77
CD44-204ENST00000279452 CCNB3Q8WWL7 1395 aa10.25□□□□□ -0.77
CD44-204ENST00000279452 COL17A1Q9UMD9 1497 aaPredicted RBP10.24□□□□□ -0.77
CD44-204ENST00000279452 EFCAB2Q5VUJ9 269 aa10.24□□□□□ -0.77
CD44-204ENST00000279452 ZNF777Q9ULD5 760 aaPredicted RBP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 117.7 ms