RNA–Protein interactions for RNA: ENST00000279247.10

CAPN1-201, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 3,007 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-201ENST00000279247 WDR62O43379 1518 aa27.24■■□□□ 1.95
CAPN1-201ENST00000279247 THOC2Q8NI27 1593 aaKnown RBP27.2■■□□□ 1.95
CAPN1-201ENST00000279247 WDR97A6NE52 1622 aa27.2■■□□□ 1.94
CAPN1-201ENST00000279247 ABCA5Q8WWZ7 1642 aa27.15■■□□□ 1.94
CAPN1-201ENST00000279247 FBLN2P98095 1184 aa27.12■■□□□ 1.93
CAPN1-201ENST00000279247 IFT140Q96RY7 1462 aa27.11■■□□□ 1.93
CAPN1-201ENST00000279247 FHOD3Q2V2M9 1422 aa27.08■■□□□ 1.93
CAPN1-201ENST00000279247 ITGAEP38570 1179 aa27.08■■□□□ 1.93
CAPN1-201ENST00000279247 CUL7Q14999 1698 aa27.02■■□□□ 1.92
CAPN1-201ENST00000279247 GRIN2BQ13224 1484 aa26.98■■□□□ 1.91
CAPN1-201ENST00000279247 EIF4G3O43432 1585 aaKnown RBP26.96■■□□□ 1.91
CAPN1-201ENST00000279247 PBRM1Q86U86 1689 aa26.96■■□□□ 1.91
CAPN1-201ENST00000279247 SNAPC4Q5SXM2 1469 aa26.95■■□□□ 1.9
CAPN1-201ENST00000279247 CHMP7Q8WUX9 453 aaPredicted RBP26.91■■□□□ 1.9
CAPN1-201ENST00000279247 FHAD1B1AJZ9 1412 aa26.9■■□□□ 1.9
CAPN1-201ENST00000279247 CTTNBP2Q8WZ74 1663 aa26.88■■□□□ 1.89
CAPN1-201ENST00000279247 PCF11O94913 1555 aaKnown RBP26.86■■□□□ 1.89
CAPN1-201ENST00000279247 ARID3CA6NKF2 412 aa26.84■■□□□ 1.89
CAPN1-201ENST00000279247 ADAMTS12P58397 1594 aa26.83■■□□□ 1.89
CAPN1-201ENST00000279247 TIAM1Q13009 1591 aa26.82■■□□□ 1.88
CAPN1-201ENST00000279247 FAM50AQ14320 339 aaKnown RBP26.82■■□□□ 1.88
CAPN1-201ENST00000279247 CCNB3Q8WWL7 1395 aa26.79■■□□□ 1.88
CAPN1-201ENST00000279247 LRRC9Q6ZRR7 1453 aa26.76■■□□□ 1.87
CAPN1-201ENST00000279247 EFCAB5A4FU69 1503 aa26.76■■□□□ 1.87
CAPN1-201ENST00000279247 PHLDB1Q86UU1 1377 aa26.73■■□□□ 1.87
CAPN1-201ENST00000279247 RRBP1Q9P2E9 1410 aaKnown RBP26.72■■□□□ 1.87
CAPN1-201ENST00000279247 FMN1Q68DA7 1419 aa26.71■■□□□ 1.87
CAPN1-201ENST00000279247 GRIN2AQ12879 1464 aa26.7■■□□□ 1.86
CAPN1-201ENST00000279247 CASKIN1Q8WXD9 1431 aa26.69■■□□□ 1.86
CAPN1-201ENST00000279247 FYCO1Q9BQS8 1478 aa26.67■■□□□ 1.86
CAPN1-201ENST00000279247 MAGI1Q96QZ7 1491 aaPredicted RBP26.64■■□□□ 1.86
CAPN1-201ENST00000279247 MTUS2Q5JR59 1369 aa26.64■■□□□ 1.86
CAPN1-201ENST00000279247 SYNJ2O15056 1496 aa26.64■■□□□ 1.86
CAPN1-201ENST00000279247 MAP3K1Q13233 1512 aa26.61■■□□□ 1.85
CAPN1-201ENST00000279247 IQGAP2Q13576 1575 aa26.59■■□□□ 1.85
CAPN1-201ENST00000279247 SAMD9Q5K651 1589 aa26.59■■□□□ 1.85
CAPN1-201ENST00000279247 CFAP43Q8NDM7 1665 aa26.58■■□□□ 1.85
CAPN1-201ENST00000279247 CEP170Q5SW79 1584 aa26.56■■□□□ 1.84
CAPN1-201ENST00000279247 JPH4Q96JJ6 628 aa26.53■■□□□ 1.84
CAPN1-201ENST00000279247 KIAA0586Q9BVV6 1533 aa26.52■■□□□ 1.84
CAPN1-201ENST00000279247 DHX57Q6P158 1386 aaKnown RBP26.52■■□□□ 1.84
CAPN1-201ENST00000279247 RAB3GAP2Q9H2M9 1393 aa26.46■■□□□ 1.83
CAPN1-201ENST00000279247 LRRIQ1Q96JM4 1722 aa26.46■■□□□ 1.83
CAPN1-201ENST00000279247 DISP1Q96F81 1524 aa26.42■■□□□ 1.82
CAPN1-201ENST00000279247 NUP160Q12769 1436 aa26.41■■□□□ 1.82
CAPN1-201ENST00000279247 DIEXFQ68CQ4 756 aaKnown RBP26.41■■□□□ 1.82
CAPN1-201ENST00000279247 CDK13Q14004 1512 aaKnown RBP26.4■■□□□ 1.82
CAPN1-201ENST00000279247 CHD1O14646 1710 aa26.38■■□□□ 1.81
CAPN1-201ENST00000279247 NCOA2Q15596 1464 aa26.37■■□□□ 1.81
CAPN1-201ENST00000279247 UGGT2Q9NYU1 1516 aa26.37■■□□□ 1.81
CAPN1-201ENST00000279247 FGD6Q6ZV73 1430 aa26.36■■□□□ 1.81
CAPN1-201ENST00000279247 ZNF316A6NFI3 1004 aaPredicted RBP26.36■■□□□ 1.81
CAPN1-201ENST00000279247 SETD5Q9C0A6 1442 aa26.34■■□□□ 1.81
CAPN1-201ENST00000279247 MAGI3Q5TCQ9 1506 aa26.34■■□□□ 1.81
CAPN1-201ENST00000279247 CHIC2Q9UKJ5 165 aa26.32■■□□□ 1.8
CAPN1-201ENST00000279247 EPRSP07814 1512 aaKnown RBP26.32■■□□□ 1.8
CAPN1-201ENST00000279247 KIAA0556O60303 1618 aa26.31■■□□□ 1.8
CAPN1-201ENST00000279247 HECW1Q76N89 1606 aa26.29■■□□□ 1.8
CAPN1-201ENST00000279247 PRG4Q92954 1404 aaPredicted RBP26.29■■□□□ 1.8
CAPN1-201ENST00000279247 NEUROD1Q13562 356 aa26.28■■□□□ 1.8
CAPN1-201ENST00000279247 PLB1Q6P1J6 1458 aa26.27■■□□□ 1.8
CAPN1-201ENST00000279247 MYOM3Q5VTT5 1437 aa26.26■■□□□ 1.79
CAPN1-201ENST00000279247 CCDC18Q5T9S5 1454 aa26.26■■□□□ 1.79
CAPN1-201ENST00000279247 EHBP1L1Q8N3D4 1523 aa26.25■■□□□ 1.79
CAPN1-201ENST00000279247 SUPT6HQ7KZ85 1726 aaKnown RBP26.25■■□□□ 1.79
CAPN1-201ENST00000279247 SIN3AQ96ST3 1273 aa26.23■■□□□ 1.79
CAPN1-201ENST00000279247 CARMIL2Q6F5E8 1435 aa26.23■■□□□ 1.79
CAPN1-201ENST00000279247 RRP7BPQ9NSQ0 103 aa26.23■■□□□ 1.79
CAPN1-201ENST00000279247 CLSPNQ9HAW4 1339 aa26.23■■□□□ 1.79
CAPN1-201ENST00000279247 PTPRKQ15262 1439 aa26.21■■□□□ 1.79
CAPN1-201ENST00000279247 ERCC6L2Q5T890 1561 aa26.19■■□□□ 1.78
CAPN1-201ENST00000279247 NUP153P49790 1475 aaKnown RBP26.17■■□□□ 1.78
CAPN1-201ENST00000279247 CDK11AQ9UQ88 783 aaPredicted RBP26.14■■□□□ 1.77
CAPN1-201ENST00000279247 ZNF644Q9H582 1327 aaPredicted RBP26.12■■□□□ 1.77
CAPN1-201ENST00000279247 RAPGEF6Q8TEU7 1601 aa26.11■■□□□ 1.77
CAPN1-201ENST00000279247 PTPN23Q9H3S7 1636 aa26.11■■□□□ 1.77
CAPN1-201ENST00000279247 PTPRGP23470 1445 aa26.11■■□□□ 1.77
CAPN1-201ENST00000279247 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.11■■□□□ 1.77
CAPN1-201ENST00000279247 ZNF777Q9ULD5 760 aaPredicted RBP26.11■■□□□ 1.77
CAPN1-201ENST00000279247 MAPKBP1O60336 1514 aa26.1■■□□□ 1.77
CAPN1-201ENST00000279247 TRIM52Q96A61 297 aa26.05■■□□□ 1.76
CAPN1-201ENST00000279247 ARHGEF11O15085 1522 aa26.03■■□□□ 1.76
CAPN1-201ENST00000279247 OSCARQ8IYS5 282 aa26.01■■□□□ 1.75
CAPN1-201ENST00000279247 NAIPQ13075 1403 aa26■■□□□ 1.75
CAPN1-201ENST00000279247 HFM1A2PYH4 1435 aa25.99■■□□□ 1.75
CAPN1-201ENST00000279247 CFDP1Q9UEE9 299 aaPredicted RBP25.98■■□□□ 1.75
CAPN1-201ENST00000279247 PLEKHD1A6NEE1 506 aa25.97■■□□□ 1.75
CAPN1-201ENST00000279247 MIER1Q8N108 512 aa25.96■■□□□ 1.75
CAPN1-201ENST00000279247 CLASP1Q7Z460 1538 aa25.95■■□□□ 1.74
CAPN1-201ENST00000279247 YTHDC1Q96MU7 727 aaKnown RBP25.94■■□□□ 1.74
CAPN1-201ENST00000279247 TROQ12816 1431 aaPredicted RBP25.93■■□□□ 1.74
CAPN1-201ENST00000279247 ATP10BO94823 1461 aa25.92■■□□□ 1.74
CAPN1-201ENST00000279247 MIA2Q96PC5 1412 aa25.91■■□□□ 1.74
CAPN1-201ENST00000279247 SHROOM2Q13796 1616 aa25.91■■□□□ 1.74
CAPN1-201ENST00000279247 KCNH8Q96L42 1107 aa25.9■■□□□ 1.74
CAPN1-201ENST00000279247 TCOF1Q13428 1488 aaKnown RBP25.9■■□□□ 1.74
CAPN1-201ENST00000279247 ABCA8O94911 1581 aa25.89■■□□□ 1.74
CAPN1-201ENST00000279247 HIRIP3Q9BW71 556 aaPredicted RBP25.89■■□□□ 1.73
CAPN1-201ENST00000279247 FOXD1Q16676 465 aa25.88■■□□□ 1.73
CAPN1-201ENST00000279247 KIF14Q15058 1648 aa25.88■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms