RNA–Protein interactions for RNA: ENST00000278833.3

ROM1-201, Transcript of retinal outer segment membrane protein 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene ROM1, Length 1,878 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ROM1-201ENST00000278833 GAPVD1Q14C86 1478 aa37.55■■■■□ 3.6
ROM1-201ENST00000278833 ABCA5Q8WWZ7 1642 aa37.53■■■■□ 3.6
ROM1-201ENST00000278833 HNRNPUL2Q1KMD3 747 aaKnown RBP37.5■■■■□ 3.59
ROM1-201ENST00000278833 CARMIL1Q5VZK9 1371 aa37.49■■■■□ 3.59
ROM1-201ENST00000278833 CLSPNQ9HAW4 1339 aa37.47■■■■□ 3.59
ROM1-201ENST00000278833 GRIN2BQ13224 1484 aa37.45■■■■□ 3.59
ROM1-201ENST00000278833 RANGAP1P46060 587 aaPredicted RBP37.43■■■■□ 3.58
ROM1-201ENST00000278833 DIEXFQ68CQ4 756 aaKnown RBP37.43■■■■□ 3.58
ROM1-201ENST00000278833 PBRM1Q86U86 1689 aa37.39■■■■□ 3.58
ROM1-201ENST00000278833 CUL7Q14999 1698 aa37.38■■■■□ 3.57
ROM1-201ENST00000278833 TIAM1Q13009 1591 aa37.38■■■■□ 3.57
ROM1-201ENST00000278833 SNAPC4Q5SXM2 1469 aa37.36■■■■□ 3.57
ROM1-201ENST00000278833 ZNF316A6NFI3 1004 aaPredicted RBP37.36■■■■□ 3.57
ROM1-201ENST00000278833 KANK4Q5T7N3 995 aaPredicted RBP37.35■■■■□ 3.57
ROM1-201ENST00000278833 CFAP43Q8NDM7 1665 aa37.3■■■■□ 3.56
ROM1-201ENST00000278833 MAGI1Q96QZ7 1491 aaPredicted RBP37.29■■■■□ 3.56
ROM1-201ENST00000278833 EFCAB5A4FU69 1503 aa37.27■■■■□ 3.56
ROM1-201ENST00000278833 FHAD1B1AJZ9 1412 aa37.25■■■■□ 3.55
ROM1-201ENST00000278833 CCNB3Q8WWL7 1395 aa37.24■■■■□ 3.55
ROM1-201ENST00000278833 DHX57Q6P158 1386 aaKnown RBP37.23■■■■□ 3.55
ROM1-201ENST00000278833 FBLN2P98095 1184 aa37.22■■■■□ 3.55
ROM1-201ENST00000278833 CTTNBP2Q8WZ74 1663 aa37.2■■■■□ 3.55
ROM1-201ENST00000278833 SYNJ2O15056 1496 aa37.16■■■■□ 3.54
ROM1-201ENST00000278833 CHMP7Q8WUX9 453 aaPredicted RBP37.16■■■■□ 3.54
ROM1-201ENST00000278833 LRRC9Q6ZRR7 1453 aa37.14■■■■□ 3.54
ROM1-201ENST00000278833 ADAMTS12P58397 1594 aa37.13■■■■□ 3.53
ROM1-201ENST00000278833 CHD1O14646 1710 aa37.13■■■■□ 3.53
ROM1-201ENST00000278833 PCF11O94913 1555 aaKnown RBP37.12■■■■□ 3.53
ROM1-201ENST00000278833 SCAF1Q9H7N4 1312 aaKnown RBP37.09■■■■□ 3.53
ROM1-201ENST00000278833 OSCARQ8IYS5 282 aa37.08■■■■□ 3.53
ROM1-201ENST00000278833 FYCO1Q9BQS8 1478 aa37.07■■■■□ 3.52
ROM1-201ENST00000278833 ACIN1Q9UKV3 1341 aaKnown RBP37.04■■■■□ 3.52
ROM1-201ENST00000278833 GRIN2AQ12879 1464 aa36.98■■■■□ 3.51
ROM1-201ENST00000278833 CASKIN1Q8WXD9 1431 aa36.97■■■■□ 3.51
ROM1-201ENST00000278833 CENPBP07199 599 aaPredicted RBP36.94■■■■□ 3.5
ROM1-201ENST00000278833 SAMD9Q5K651 1589 aa36.9■■■■□ 3.5
ROM1-201ENST00000278833 DNAJC5Q9H3Z4 198 aa36.86■■■■□ 3.49
ROM1-201ENST00000278833 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP36.86■■■■□ 3.49
ROM1-201ENST00000278833 FHOD3Q2V2M9 1422 aa36.84■■■■□ 3.49
ROM1-201ENST00000278833 PHLDB1Q86UU1 1377 aa36.84■■■■□ 3.49
ROM1-201ENST00000278833 FMN1Q68DA7 1419 aa36.83■■■■□ 3.49
ROM1-201ENST00000278833 NEUROD1Q13562 356 aa36.82■■■■□ 3.48
ROM1-201ENST00000278833 NUP160Q12769 1436 aa36.8■■■■□ 3.48
ROM1-201ENST00000278833 CEP170Q5SW79 1584 aa36.79■■■■□ 3.48
ROM1-201ENST00000278833 RAB3GAP2Q9H2M9 1393 aa36.75■■■■□ 3.47
ROM1-201ENST00000278833 SETD5Q9C0A6 1442 aa36.74■■■■□ 3.47
ROM1-201ENST00000278833 MAPKBP1O60336 1514 aa36.74■■■■□ 3.47
ROM1-201ENST00000278833 CLASP1Q7Z460 1538 aa36.73■■■■□ 3.47
ROM1-201ENST00000278833 LRRIQ1Q96JM4 1722 aa36.59■■■■□ 3.45
ROM1-201ENST00000278833 MIER1Q8N108 512 aa36.57■■■■□ 3.44
ROM1-201ENST00000278833 KIAA0586Q9BVV6 1533 aa36.56■■■■□ 3.44
ROM1-201ENST00000278833 P3H3Q8IVL6 736 aa36.54■■■■□ 3.44
ROM1-201ENST00000278833 FGD6Q6ZV73 1430 aa36.51■■■■□ 3.44
ROM1-201ENST00000278833 EHBP1L1Q8N3D4 1523 aa36.5■■■■□ 3.43
ROM1-201ENST00000278833 JPH4Q96JJ6 628 aa36.49■■■■□ 3.43
ROM1-201ENST00000278833 PELP1Q8IZL8 1130 aaKnown RBP36.48■■■■□ 3.43
ROM1-201ENST00000278833 ITGAEP38570 1179 aa36.45■■■■□ 3.43
ROM1-201ENST00000278833 SUPT6HQ7KZ85 1726 aaKnown RBP36.45■■■■□ 3.43
ROM1-201ENST00000278833 ARHGEF11O15085 1522 aa36.45■■■■□ 3.43
ROM1-201ENST00000278833 SHROOM2Q13796 1616 aa36.44■■■■□ 3.42
ROM1-201ENST00000278833 CCDC18Q5T9S5 1454 aa36.42■■■■□ 3.42
ROM1-201ENST00000278833 IQGAP2Q13576 1575 aa36.41■■■■□ 3.42
ROM1-201ENST00000278833 RIMBP3CA6NJZ7 1639 aa36.39■■■■□ 3.42
ROM1-201ENST00000278833 RIMBP3BA6NNM3 1639 aa36.39■■■■□ 3.42
ROM1-201ENST00000278833 RIMBP3Q9UFD9 1639 aa36.39■■■■□ 3.42
ROM1-201ENST00000278833 FAM50AQ14320 339 aaKnown RBP36.39■■■■□ 3.42
ROM1-201ENST00000278833 TIMELESSQ9UNS1 1208 aa36.39■■■■□ 3.42
ROM1-201ENST00000278833 GTF3C3Q9Y5Q9 886 aa36.38■■■■□ 3.41
ROM1-201ENST00000278833 MTUS2Q5JR59 1369 aa36.36■■■■□ 3.41
ROM1-201ENST00000278833 HECW1Q76N89 1606 aa36.36■■■■□ 3.41
ROM1-201ENST00000278833 PRG4Q92954 1404 aaPredicted RBP36.35■■■■□ 3.41
ROM1-201ENST00000278833 NCOA2Q15596 1464 aa36.34■■■■□ 3.41
ROM1-201ENST00000278833 MYOM3Q5VTT5 1437 aa36.34■■■■□ 3.41
ROM1-201ENST00000278833 UGGT2Q9NYU1 1516 aa36.34■■■■□ 3.41
ROM1-201ENST00000278833 ERCC6L2Q5T890 1561 aa36.33■■■■□ 3.41
ROM1-201ENST00000278833 HFM1A2PYH4 1435 aa36.3■■■■□ 3.4
ROM1-201ENST00000278833 ATP1B4Q9UN42 357 aaPredicted RBP36.29■■■■□ 3.4
ROM1-201ENST00000278833 PTPN23Q9H3S7 1636 aa36.27■■■■□ 3.4
ROM1-201ENST00000278833 TCOF1Q13428 1488 aaKnown RBP36.23■■■■□ 3.39
ROM1-201ENST00000278833 MAGI3Q5TCQ9 1506 aa36.2■■■■□ 3.39
ROM1-201ENST00000278833 UACAQ9BZF9 1416 aa36.17■■■■□ 3.38
ROM1-201ENST00000278833 CYB5RLQ6IPT4 315 aa36.16■■■■□ 3.38
ROM1-201ENST00000278833 DISP1Q96F81 1524 aa36.16■■■■□ 3.38
ROM1-201ENST00000278833 PTPRKQ15262 1439 aa36.15■■■■□ 3.38
ROM1-201ENST00000278833 CARMIL2Q6F5E8 1435 aa36.15■■■■□ 3.38
ROM1-201ENST00000278833 GCC2Q8IWJ2 1684 aa36.13■■■■□ 3.37
ROM1-201ENST00000278833 AKNAQ7Z591 1439 aa36.13■■■■□ 3.37
ROM1-201ENST00000278833 EPRSP07814 1512 aaKnown RBP36.12■■■■□ 3.37
ROM1-201ENST00000278833 YTHDC1Q96MU7 727 aaKnown RBP36.11■■■■□ 3.37
ROM1-201ENST00000278833 NAIPQ13075 1403 aa36.1■■■■□ 3.37
ROM1-201ENST00000278833 KIAA0556O60303 1618 aa36.06■■■■□ 3.36
ROM1-201ENST00000278833 MIA2Q96PC5 1412 aa36.04■■■■□ 3.36
ROM1-201ENST00000278833 SIN3AQ96ST3 1273 aa35.99■■■■□ 3.35
ROM1-201ENST00000278833 PTPRGP23470 1445 aa35.97■■■■□ 3.35
ROM1-201ENST00000278833 PPP1R15AO75807 674 aaPredicted RBP35.93■■■■□ 3.34
ROM1-201ENST00000278833 CDK13Q14004 1512 aaKnown RBP35.9■■■■□ 3.34
ROM1-201ENST00000278833 RAPGEF6Q8TEU7 1601 aa35.84■■■■□ 3.33
ROM1-201ENST00000278833 KDM5BQ9UGL1 1544 aa35.81■■■■□ 3.32
ROM1-201ENST00000278833 TONSLQ96HA7 1378 aa35.8■■■■□ 3.32
ROM1-201ENST00000278833 NUP153P49790 1475 aaKnown RBP35.77■■■■□ 3.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms