RNA–Protein interactions for RNA: ENST00000273342.8

COL8A1-202, Transcript of collagen type VIII alpha 1 chain, humanhuman

APPRIS P1 TSL 2 BASIC

Gene COL8A1, Length 3,029 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-202ENST00000273342 TOP2BQ02880 1626 aa18.2■□□□□ 0.5
COL8A1-202ENST00000273342 ARHGAP35Q9NRY4 1499 aa18.2■□□□□ 0.5
COL8A1-202ENST00000273342 SETD5Q9C0A6 1442 aa18.18■□□□□ 0.5
COL8A1-202ENST00000273342 MSH5O43196 834 aa18.17■□□□□ 0.5
COL8A1-202ENST00000273342 KIF27Q86VH2 1401 aa18.16■□□□□ 0.5
COL8A1-202ENST00000273342 PEG3Q9GZU2 1588 aa18.15■□□□□ 0.5
COL8A1-202ENST00000273342 ERICH3Q5RHP9 1530 aa18.14■□□□□ 0.5
COL8A1-202ENST00000273342 PHLDB1Q86UU1 1377 aa18.14■□□□□ 0.49
COL8A1-202ENST00000273342 HNRNPUQ00839 825 aaKnown RBP eCLIP18.14■□□□□ 0.49
COL8A1-202ENST00000273342 CUX2O14529 1486 aa18.14■□□□□ 0.49
COL8A1-202ENST00000273342 ERICH6Q7L0X2 663 aa18.09■□□□□ 0.49
COL8A1-202ENST00000273342 CUX1P39880 1505 aa18.08■□□□□ 0.49
COL8A1-202ENST00000273342 CCER2I3L3R5 266 aa18.06■□□□□ 0.48
COL8A1-202ENST00000273342 TONSLQ96HA7 1378 aa18.04■□□□□ 0.48
COL8A1-202ENST00000273342 CDK11AQ9UQ88 783 aaPredicted RBP18.03■□□□□ 0.48
COL8A1-202ENST00000273342 CNGB1Q14028 1251 aaPredicted RBP18.02■□□□□ 0.48
COL8A1-202ENST00000273342 BIVM-ERCC5R4GMW8 1640 aa18.01■□□□□ 0.47
COL8A1-202ENST00000273342 LRRC9Q6ZRR7 1453 aa17.99■□□□□ 0.47
COL8A1-202ENST00000273342 IGF1RP08069 1367 aa17.98■□□□□ 0.47
COL8A1-202ENST00000273342 TIAM1Q13009 1591 aa17.97■□□□□ 0.47
COL8A1-202ENST00000273342 CARMIL1Q5VZK9 1371 aa17.95■□□□□ 0.46
COL8A1-202ENST00000273342 SENP3-EIF4A1A0A087X0R7 540 aa17.95■□□□□ 0.46
COL8A1-202ENST00000273342 CCDC184Q52MB2 194 aa17.95■□□□□ 0.46
COL8A1-202ENST00000273342 ARID3CA6NKF2 412 aa17.94■□□□□ 0.46
COL8A1-202ENST00000273342 FAM9BQ8IZU0 186 aa17.94■□□□□ 0.46
COL8A1-202ENST00000273342 B4GALNT3Q6L9W6 998 aa17.93■□□□□ 0.46
COL8A1-202ENST00000273342 FHOD3Q2V2M9 1422 aa17.91■□□□□ 0.46
COL8A1-202ENST00000273342 TIMELESSQ9UNS1 1208 aa17.91■□□□□ 0.46
COL8A1-202ENST00000273342 CHIC2Q9UKJ5 165 aa17.9■□□□□ 0.46
COL8A1-202ENST00000273342 HSPA5P11021 654 aaKnown RBP17.86■□□□□ 0.45
COL8A1-202ENST00000273342 RRP7BPQ9NSQ0 103 aa17.86■□□□□ 0.45
COL8A1-202ENST00000273342 NBR1Q14596 966 aa17.85■□□□□ 0.45
COL8A1-202ENST00000273342 WASHC2AQ641Q2 1341 aa17.84■□□□□ 0.45
COL8A1-202ENST00000273342 FANCIQ9NVI1 1328 aa17.84■□□□□ 0.45
COL8A1-202ENST00000273342 FOXD1Q16676 465 aa17.82■□□□□ 0.44
COL8A1-202ENST00000273342 FHAD1B1AJZ9 1412 aa17.82■□□□□ 0.44
COL8A1-202ENST00000273342 PCF11O94913 1555 aaKnown RBP17.8■□□□□ 0.44
COL8A1-202ENST00000273342 MRS2Q9HD23 443 aa17.8■□□□□ 0.44
COL8A1-202ENST00000273342 PPP4R2Q9NY27 417 aa17.8■□□□□ 0.44
COL8A1-202ENST00000273342 CCDC18Q5T9S5 1454 aa17.79■□□□□ 0.44
COL8A1-202ENST00000273342 PTPRKQ15262 1439 aa17.79■□□□□ 0.44
COL8A1-202ENST00000273342 CFTRP13569 1480 aa17.78■□□□□ 0.44
COL8A1-202ENST00000273342 POLR3GLQ9BT43 218 aa17.78■□□□□ 0.44
COL8A1-202ENST00000273342 MTUS2Q5JR59 1369 aa17.78■□□□□ 0.44
COL8A1-202ENST00000273342 C11orf95C9JLR9 678 aaPredicted RBP17.77■□□□□ 0.43
COL8A1-202ENST00000273342 DEKP35659 375 aaKnown RBP17.77■□□□□ 0.43
COL8A1-202ENST00000273342 AQRO60306 1485 aaKnown RBP eCLIP17.76■□□□□ 0.43
COL8A1-202ENST00000273342 NCAPD3P42695 1498 aa17.76■□□□□ 0.43
COL8A1-202ENST00000273342 MAP3K1Q13233 1512 aa17.75■□□□□ 0.43
COL8A1-202ENST00000273342 FGD5Q6ZNL6 1462 aa17.75■□□□□ 0.43
COL8A1-202ENST00000273342 EIF4G2P78344 907 aaKnown RBP eCLIP17.74■□□□□ 0.43
COL8A1-202ENST00000273342 FGD6Q6ZV73 1430 aa17.74■□□□□ 0.43
COL8A1-202ENST00000273342 PAK3O75914 559 aaPredicted RBP17.72■□□□□ 0.43
COL8A1-202ENST00000273342 RAD54L2Q9Y4B4 1467 aa17.7■□□□□ 0.42
COL8A1-202ENST00000273342 UACAQ9BZF9 1416 aa17.7■□□□□ 0.42
COL8A1-202ENST00000273342 DNAJC5BQ9UF47 199 aa17.69■□□□□ 0.42
COL8A1-202ENST00000273342 PRKRIP1Q9H875 184 aaPredicted RBP17.69■□□□□ 0.42
COL8A1-202ENST00000273342 L3MBTL2Q969R5 705 aa17.69■□□□□ 0.42
COL8A1-202ENST00000273342 CADPSQ9ULU8 1353 aa17.69■□□□□ 0.42
COL8A1-202ENST00000273342 NAIPQ13075 1403 aa17.66■□□□□ 0.42
COL8A1-202ENST00000273342 HFM1A2PYH4 1435 aa17.65■□□□□ 0.42
COL8A1-202ENST00000273342 NOP58Q9Y2X3 529 aaKnown RBP17.65■□□□□ 0.42
COL8A1-202ENST00000273342 TDRD9Q8NDG6 1382 aaKnown RBP17.64■□□□□ 0.41
COL8A1-202ENST00000273342 ZNF326Q5BKZ1 582 aaKnown RBP17.63■□□□□ 0.41
COL8A1-202ENST00000273342 CASKIN1Q8WXD9 1431 aa17.63■□□□□ 0.41
COL8A1-202ENST00000273342 CFAP43Q8NDM7 1665 aa17.63■□□□□ 0.41
COL8A1-202ENST00000273342 NESP48681 1621 aa17.62■□□□□ 0.41
COL8A1-202ENST00000273342 HMGXB3Q12766 1538 aa17.62■□□□□ 0.41
COL8A1-202ENST00000273342 FYCO1Q9BQS8 1478 aa17.61■□□□□ 0.41
COL8A1-202ENST00000273342 CCDC136Q96JN2 1154 aa17.6■□□□□ 0.41
COL8A1-202ENST00000273342 PTPN23Q9H3S7 1636 aa17.6■□□□□ 0.41
COL8A1-202ENST00000273342 MPHOSPH9Q99550 1183 aa17.6■□□□□ 0.41
COL8A1-202ENST00000273342 AKNAQ7Z591 1439 aa17.6■□□□□ 0.41
COL8A1-202ENST00000273342 NBPF8Q3BBV2 869 aa17.59■□□□□ 0.41
COL8A1-202ENST00000273342 FMN1Q68DA7 1419 aa17.59■□□□□ 0.41
COL8A1-202ENST00000273342 CNTLNQ9NXG0 1405 aa17.59■□□□□ 0.41
COL8A1-202ENST00000273342 ZBED9Q6R2W3 1325 aa17.58■□□□□ 0.4
COL8A1-202ENST00000273342 ERICH6BQ5W0A0 696 aa17.58■□□□□ 0.4
COL8A1-202ENST00000273342 NPM2Q86SE8 214 aaKnown RBP17.58■□□□□ 0.4
COL8A1-202ENST00000273342 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.58■□□□□ 0.4
COL8A1-202ENST00000273342 KDM5BQ9UGL1 1544 aa17.57■□□□□ 0.4
COL8A1-202ENST00000273342 NCOA2Q15596 1464 aa17.57■□□□□ 0.4
COL8A1-202ENST00000273342 CCDC7Q96M83 1385 aa17.57■□□□□ 0.4
COL8A1-202ENST00000273342 SALL2Q9Y467 1007 aaPredicted RBP17.55■□□□□ 0.4
COL8A1-202ENST00000273342 FANCD2Q9BXW9 1451 aa17.55■□□□□ 0.4
COL8A1-202ENST00000273342 KIF7Q2M1P5 1343 aa17.54■□□□□ 0.4
COL8A1-202ENST00000273342 MYOM3Q5VTT5 1437 aa17.54■□□□□ 0.4
COL8A1-202ENST00000273342 ANP32AP39687 249 aaKnown RBP17.52■□□□□ 0.39
COL8A1-202ENST00000273342 RTL5Q5HYW3 569 aaPredicted RBP17.49■□□□□ 0.39
COL8A1-202ENST00000273342 RTN4Q9NQC3 1192 aaKnown RBP17.49■□□□□ 0.39
COL8A1-202ENST00000273342 ZBTB47Q9UFB7 747 aaPredicted RBP17.49■□□□□ 0.39
COL8A1-202ENST00000273342 DENND4BO75064 1496 aaPredicted RBP17.48■□□□□ 0.39
COL8A1-202ENST00000273342 SLC4A1APQ9BWU0 796 aaKnown RBP17.48■□□□□ 0.39
COL8A1-202ENST00000273342 SNAPC4Q5SXM2 1469 aa17.47■□□□□ 0.39
COL8A1-202ENST00000273342 MYT1LQ9UL68 1186 aa17.46■□□□□ 0.39
COL8A1-202ENST00000273342 NCOA1Q15788 1441 aa17.46■□□□□ 0.39
COL8A1-202ENST00000273342 KDM6BO15054 1643 aa17.45■□□□□ 0.38
COL8A1-202ENST00000273342 IPO9Q96P70 1041 aaKnown RBP17.45■□□□□ 0.38
COL8A1-202ENST00000273342 NUDCQ9Y266 331 aa17.45■□□□□ 0.38
COL8A1-202ENST00000273342 LAS1LQ9Y4W2 734 aaKnown RBP17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms