RNA–Protein interactions for RNA: ENST00000273064.10

CNOT9-201, Transcript of CCR4-NOT transcription complex subunit 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNOT9, Length 4,079 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT9-201ENST00000273064 TDRD9Q8NDG6 1382 aaKnown RBP20.29■□□□□ 0.84
CNOT9-201ENST00000273064 CHMP7Q8WUX9 453 aaPredicted RBP20.28■□□□□ 0.84
CNOT9-201ENST00000273064 CDK11AQ9UQ88 783 aaPredicted RBP20.27■□□□□ 0.84
CNOT9-201ENST00000273064 FOXD1Q16676 465 aa20.25■□□□□ 0.83
CNOT9-201ENST00000273064 SENP3Q9H4L4 574 aaPredicted RBP20.25■□□□□ 0.83
CNOT9-201ENST00000273064 SMARCA2P51531 1590 aa20.25■□□□□ 0.83
CNOT9-201ENST00000273064 KCNH8Q96L42 1107 aa20.22■□□□□ 0.83
CNOT9-201ENST00000273064 RGL3Q3MIN7 710 aa20.14■□□□□ 0.82
CNOT9-201ENST00000273064 MRS2Q9HD23 443 aa20.14■□□□□ 0.81
CNOT9-201ENST00000273064 RAB3GAP2Q9H2M9 1393 aa20.13■□□□□ 0.81
CNOT9-201ENST00000273064 FHOD3Q2V2M9 1422 aa20.09■□□□□ 0.81
CNOT9-201ENST00000273064 EIF4G2P78344 907 aaKnown RBP eCLIP20.07■□□□□ 0.8
CNOT9-201ENST00000273064 TSPY4P0CV99 314 aa20.07■□□□□ 0.8
CNOT9-201ENST00000273064 TSPY10P0CW01 314 aa20.07■□□□□ 0.8
CNOT9-201ENST00000273064 CHGAP10645 457 aaKnown RBP20.06■□□□□ 0.8
CNOT9-201ENST00000273064 CFDP1Q9UEE9 299 aaPredicted RBP20.06■□□□□ 0.8
CNOT9-201ENST00000273064 EIF4G1Q04637 1599 aaKnown RBP20.04■□□□□ 0.8
CNOT9-201ENST00000273064 CADPSQ9ULU8 1353 aa20.04■□□□□ 0.8
CNOT9-201ENST00000273064 BCL11AQ9H165 835 aa20.03■□□□□ 0.8
CNOT9-201ENST00000273064 SUPT16HQ9Y5B9 1047 aaKnown RBP20.02■□□□□ 0.8
CNOT9-201ENST00000273064 MYT1Q01538 1121 aa20.01■□□□□ 0.79
CNOT9-201ENST00000273064 DHX57Q6P158 1386 aaKnown RBP20■□□□□ 0.79
CNOT9-201ENST00000273064 TMC1Q8TDI8 760 aa19.98■□□□□ 0.79
CNOT9-201ENST00000273064 SETD5Q9C0A6 1442 aa19.98■□□□□ 0.79
CNOT9-201ENST00000273064 CLSPNQ9HAW4 1339 aa19.98■□□□□ 0.79
CNOT9-201ENST00000273064 PLEKHD1A6NEE1 506 aa19.97■□□□□ 0.79
CNOT9-201ENST00000273064 SYNJ1O43426 1573 aa19.96■□□□□ 0.79
CNOT9-201ENST00000273064 DNAJC5BQ9UF47 199 aa19.95■□□□□ 0.78
CNOT9-201ENST00000273064 IGF1RP08069 1367 aa19.95■□□□□ 0.78
CNOT9-201ENST00000273064 NPM2Q86SE8 214 aaKnown RBP19.95■□□□□ 0.78
CNOT9-201ENST00000273064 FHAD1B1AJZ9 1412 aa19.94■□□□□ 0.78
CNOT9-201ENST00000273064 DAXXQ9UER7 740 aaPredicted RBP19.92■□□□□ 0.78
CNOT9-201ENST00000273064 RAD54L2Q9Y4B4 1467 aa19.91■□□□□ 0.78
CNOT9-201ENST00000273064 PPP1R15AO75807 674 aaPredicted RBP19.88■□□□□ 0.77
CNOT9-201ENST00000273064 HSPA5P11021 654 aaKnown RBP19.87■□□□□ 0.77
CNOT9-201ENST00000273064 PLPPR3Q6T4P5 718 aa19.85■□□□□ 0.77
CNOT9-201ENST00000273064 KIF21BO75037 1637 aa19.85■□□□□ 0.77
CNOT9-201ENST00000273064 ARAP1Q96P48 1450 aa19.84■□□□□ 0.77
CNOT9-201ENST00000273064 ARHGAP35Q9NRY4 1499 aa19.84■□□□□ 0.77
CNOT9-201ENST00000273064 CARD11Q9BXL7 1154 aa19.82■□□□□ 0.76
CNOT9-201ENST00000273064 FANCD2Q9BXW9 1451 aa19.8■□□□□ 0.76
CNOT9-201ENST00000273064 L3MBTL2Q969R5 705 aa19.8■□□□□ 0.76
CNOT9-201ENST00000273064 MPHOSPH9Q99550 1183 aa19.8■□□□□ 0.76
CNOT9-201ENST00000273064 FGD5Q6ZNL6 1462 aa19.8■□□□□ 0.76
CNOT9-201ENST00000273064 PHLDB1Q86UU1 1377 aa19.79■□□□□ 0.76
CNOT9-201ENST00000273064 CCDC136Q96JN2 1154 aa19.79■□□□□ 0.76
CNOT9-201ENST00000273064 DCAF11Q8TEB1 546 aa19.78■□□□□ 0.76
CNOT9-201ENST00000273064 ERCC6Q03468 1493 aa19.78■□□□□ 0.76
CNOT9-201ENST00000273064 PKD2Q13563 968 aa19.76■□□□□ 0.75
CNOT9-201ENST00000273064 B4GALNT3Q6L9W6 998 aa19.75■□□□□ 0.75
CNOT9-201ENST00000273064 NESP48681 1621 aa19.75■□□□□ 0.75
CNOT9-201ENST00000273064 ZNF644Q9H582 1327 aaPredicted RBP19.74■□□□□ 0.75
CNOT9-201ENST00000273064 CANXP27824 592 aaKnown RBP19.71■□□□□ 0.75
CNOT9-201ENST00000273064 RTL5Q5HYW3 569 aaPredicted RBP19.71■□□□□ 0.75
CNOT9-201ENST00000273064 BICRAQ9NZM4 1560 aa19.7■□□□□ 0.74
CNOT9-201ENST00000273064 NCAPD3P42695 1498 aa19.7■□□□□ 0.74
CNOT9-201ENST00000273064 NBR1Q14596 966 aa19.69■□□□□ 0.74
CNOT9-201ENST00000273064 CC2D1BQ5T0F9 858 aaKnown RBP19.69■□□□□ 0.74
CNOT9-201ENST00000273064 PDS5BQ9NTI5 1447 aa19.69■□□□□ 0.74
CNOT9-201ENST00000273064 FMN1Q68DA7 1419 aa19.68■□□□□ 0.74
CNOT9-201ENST00000273064 HNRNPMP52272 730 aaKnown RBP eCLIP19.68■□□□□ 0.74
CNOT9-201ENST00000273064 NPM1P06748 294 aaKnown RBP eCLIP19.65■□□□□ 0.74
CNOT9-201ENST00000273064 CUX1P39880 1505 aa19.64■□□□□ 0.73
CNOT9-201ENST00000273064 TNNT2P45379 298 aaPredicted RBP19.62■□□□□ 0.73
CNOT9-201ENST00000273064 PRXQ9BXM0 1461 aa19.61■□□□□ 0.73
CNOT9-201ENST00000273064 JPH4Q96JJ6 628 aa19.61■□□□□ 0.73
CNOT9-201ENST00000273064 AQRO60306 1485 aaKnown RBP eCLIP19.6■□□□□ 0.732e-7■■■■■ 39.2
CNOT9-201ENST00000273064 TIMELESSQ9UNS1 1208 aa19.6■□□□□ 0.73
CNOT9-201ENST00000273064 NEUROD2Q15784 382 aa19.59■□□□□ 0.73
CNOT9-201ENST00000273064 CFTRP13569 1480 aa19.58■□□□□ 0.73
CNOT9-201ENST00000273064 SLC24A1O60721 1099 aa19.58■□□□□ 0.73
CNOT9-201ENST00000273064 ANP32AP39687 249 aaKnown RBP19.58■□□□□ 0.73
CNOT9-201ENST00000273064 STAG3Q9UJ98 1225 aa19.58■□□□□ 0.72
CNOT9-201ENST00000273064 WDR43Q15061 677 aaKnown RBP eCLIP19.57■□□□□ 0.72
CNOT9-201ENST00000273064 NUP155O75694 1391 aa19.57■□□□□ 0.72
CNOT9-201ENST00000273064 TSHZ2Q9NRE2 1034 aa19.54■□□□□ 0.72
CNOT9-201ENST00000273064 CCER2I3L3R5 266 aa19.53■□□□□ 0.72
CNOT9-201ENST00000273064 LRRC9Q6ZRR7 1453 aa19.52■□□□□ 0.72
CNOT9-201ENST00000273064 GAPVD1Q14C86 1478 aa19.51■□□□□ 0.71
CNOT9-201ENST00000273064 RBM19Q9Y4C8 960 aaKnown RBP19.49■□□□□ 0.71
CNOT9-201ENST00000273064 PLEKHG5O94827 1062 aa19.49■□□□□ 0.71
CNOT9-201ENST00000273064 SAFB2Q14151 953 aaKnown RBP eCLIP19.48■□□□□ 0.71
CNOT9-201ENST00000273064 CCDC18Q5T9S5 1454 aa19.48■□□□□ 0.71
CNOT9-201ENST00000273064 TOP2BQ02880 1626 aa19.48■□□□□ 0.71
CNOT9-201ENST00000273064 FGD6Q6ZV73 1430 aa19.46■□□□□ 0.71
CNOT9-201ENST00000273064 ST20-MTHFSA0A0A6YYL1 179 aa19.46■□□□□ 0.7
CNOT9-201ENST00000273064 KNSTRNQ9Y448 316 aa19.46■□□□□ 0.7
CNOT9-201ENST00000273064 UNC13AQ9UPW8 1703 aa19.43■□□□□ 0.7
CNOT9-201ENST00000273064 GGT6Q6P531 493 aa19.42■□□□□ 0.7
CNOT9-201ENST00000273064 PPP4R2Q9NY27 417 aa19.42■□□□□ 0.7
CNOT9-201ENST00000273064 RRBP1Q9P2E9 1410 aaKnown RBP19.42■□□□□ 0.7
CNOT9-201ENST00000273064 NUTM2DQ5VT03 806 aaPredicted RBP19.41■□□□□ 0.7
CNOT9-201ENST00000273064 PPM1GO15355 546 aaPredicted RBP19.4■□□□□ 0.7
CNOT9-201ENST00000273064 CCDC184Q52MB2 194 aa19.39■□□□□ 0.69
CNOT9-201ENST00000273064 ZBTB47Q9UFB7 747 aaPredicted RBP19.39■□□□□ 0.69
CNOT9-201ENST00000273064 POLA1P09884 1462 aaPredicted RBP19.39■□□□□ 0.69
CNOT9-201ENST00000273064 PRKRIP1Q9H875 184 aaPredicted RBP19.39■□□□□ 0.69
CNOT9-201ENST00000273064 ESF1Q9H501 851 aaKnown RBP19.37■□□□□ 0.69
CNOT9-201ENST00000273064 ERICH3Q5RHP9 1530 aa19.36■□□□□ 0.69
CNOT9-201ENST00000273064 WASHC2AQ641Q2 1341 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms