RNA–Protein interactions for RNA: ENST00000264640.8

SMARCE1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 3

Gene SMARCE1, Length 631 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-201ENST00000264640 CCDC88BA6NC98 1476 aa12.66□□□□□ -0.38
SMARCE1-201ENST00000264640 ABCC8Q09428 1581 aa12.66□□□□□ -0.38
SMARCE1-201ENST00000264640 POTEHQ6S545 545 aa12.65□□□□□ -0.38
SMARCE1-201ENST00000264640 POLA1P09884 1462 aaPredicted RBP12.64□□□□□ -0.39
SMARCE1-201ENST00000264640 ABCB7O75027 752 aa12.63□□□□□ -0.39
SMARCE1-201ENST00000264640 SAMD1Q6SPF0 538 aaPredicted RBP12.63□□□□□ -0.39
SMARCE1-201ENST00000264640 SNAPC4Q5SXM2 1469 aa12.63□□□□□ -0.39
SMARCE1-201ENST00000264640 SYNJ1O43426 1573 aa12.63□□□□□ -0.39
SMARCE1-201ENST00000264640 RAD54L2Q9Y4B4 1467 aa12.62□□□□□ -0.39
SMARCE1-201ENST00000264640 TDRD9Q8NDG6 1382 aaKnown RBP12.58□□□□□ -0.4
SMARCE1-201ENST00000264640 GAPVD1Q14C86 1478 aa12.56□□□□□ -0.4
SMARCE1-201ENST00000264640 PBRM1Q86U86 1689 aa12.55□□□□□ -0.4
SMARCE1-201ENST00000264640 CHMP7Q8WUX9 453 aaPredicted RBP12.53□□□□□ -0.4
SMARCE1-201ENST00000264640 KIF13AQ9H1H9 1805 aa12.53□□□□□ -0.4
SMARCE1-201ENST00000264640 SOGA1O94964 1423 aa12.53□□□□□ -0.4
SMARCE1-201ENST00000264640 MAGI1Q96QZ7 1491 aaPredicted RBP12.53□□□□□ -0.4
SMARCE1-201ENST00000264640 WDR97A6NE52 1622 aa12.52□□□□□ -0.4
SMARCE1-201ENST00000264640 FGD5Q6ZNL6 1462 aa12.52□□□□□ -0.41
SMARCE1-201ENST00000264640 ERCC6L2Q5T890 1561 aa12.52□□□□□ -0.41
SMARCE1-201ENST00000264640 SYNJ2O15056 1496 aa12.5□□□□□ -0.41
SMARCE1-201ENST00000264640 GRIN2BQ13224 1484 aa12.48□□□□□ -0.41
SMARCE1-201ENST00000264640 MYCNP04198 464 aaPredicted RBP12.47□□□□□ -0.41
SMARCE1-201ENST00000264640 CUX1P39880 1505 aa12.44□□□□□ -0.42
SMARCE1-201ENST00000264640 CEP170Q5SW79 1584 aa12.41□□□□□ -0.42
SMARCE1-201ENST00000264640 ILDR1Q86SU0 546 aaPredicted RBP12.41□□□□□ -0.42
SMARCE1-201ENST00000264640 ABCA5Q8WWZ7 1642 aa12.4□□□□□ -0.42
SMARCE1-201ENST00000264640 RBM42Q9BTD8 480 aaKnown RBP12.36□□□□□ -0.43
SMARCE1-201ENST00000264640 SHROOM2Q13796 1616 aa12.36□□□□□ -0.43
SMARCE1-201ENST00000264640 GRIN2AQ12879 1464 aa12.35□□□□□ -0.43
SMARCE1-201ENST00000264640 POLA2Q14181 598 aa12.35□□□□□ -0.43
SMARCE1-201ENST00000264640 ADAMTS12P58397 1594 aa12.35□□□□□ -0.43
SMARCE1-201ENST00000264640 TSPOAP1O95153 1857 aa12.34□□□□□ -0.43
SMARCE1-201ENST00000264640 KDM6BO15054 1643 aa12.31□□□□□ -0.44
SMARCE1-201ENST00000264640 KDM4FA0A1W2PPD8 638 aa12.31□□□□□ -0.44
SMARCE1-201ENST00000264640 ABCA10Q8WWZ4 1543 aa12.3□□□□□ -0.44
SMARCE1-201ENST00000264640 NUP160Q12769 1436 aa12.29□□□□□ -0.44
SMARCE1-201ENST00000264640 SLC4A1APQ9BWU0 796 aaKnown RBP12.29□□□□□ -0.44
SMARCE1-201ENST00000264640 DIP2BQ9P265 1576 aa12.29□□□□□ -0.44
SMARCE1-201ENST00000264640 ABCC10Q5T3U5 1492 aa12.26□□□□□ -0.45
SMARCE1-201ENST00000264640 FAM69CQ0P6D2 419 aa12.25□□□□□ -0.45
SMARCE1-201ENST00000264640 FOXD4L1Q9NU39 408 aa12.25□□□□□ -0.45
SMARCE1-201ENST00000264640 ADCY10Q96PN6 1610 aa12.23□□□□□ -0.45
SMARCE1-201ENST00000264640 MAPKBP1O60336 1514 aa12.22□□□□□ -0.45
SMARCE1-201ENST00000264640 PRG4Q92954 1404 aaPredicted RBP12.22□□□□□ -0.45
SMARCE1-201ENST00000264640 ATF5Q9Y2D1 282 aaPredicted RBP12.21□□□□□ -0.45
SMARCE1-201ENST00000264640 RUSC2Q8N2Y8 1516 aa12.19□□□□□ -0.46
SMARCE1-201ENST00000264640 FHAD1B1AJZ9 1412 aa12.19□□□□□ -0.46
SMARCE1-201ENST00000264640 HECW2Q9P2P5 1572 aa12.18□□□□□ -0.46
SMARCE1-201ENST00000264640 ADGRL1O94910 1474 aa12.16□□□□□ -0.46
SMARCE1-201ENST00000264640 BIVM-ERCC5R4GMW8 1640 aa12.15□□□□□ -0.46
SMARCE1-201ENST00000264640 CHRDL2Q6WN34 429 aa12.15□□□□□ -0.46
SMARCE1-201ENST00000264640 WRNQ14191 1432 aaPredicted RBP eCLIP12.14□□□□□ -0.47
SMARCE1-201ENST00000264640 NPM1P06748 294 aaKnown RBP eCLIP12.14□□□□□ -0.47
SMARCE1-201ENST00000264640 ERICH3Q5RHP9 1530 aa12.14□□□□□ -0.47
SMARCE1-201ENST00000264640 PPRC1Q5VV67 1664 aaKnown RBP12.13□□□□□ -0.47
SMARCE1-201ENST00000264640 JPH4Q96JJ6 628 aa12.12□□□□□ -0.47
SMARCE1-201ENST00000264640 TOP2BQ02880 1626 aa12.11□□□□□ -0.47
SMARCE1-201ENST00000264640 ZBTB12Q9Y330 459 aaPredicted RBP12.09□□□□□ -0.47
SMARCE1-201ENST00000264640 CUL7Q14999 1698 aa12.06□□□□□ -0.48
SMARCE1-201ENST00000264640 AKT1S1Q96B36 256 aa12.05□□□□□ -0.48
SMARCE1-201ENST00000264640 ZBTB22O15209 634 aa12.03□□□□□ -0.48
SMARCE1-201ENST00000264640 TTBK1Q5TCY1 1321 aaPredicted RBP12.01□□□□□ -0.49
SMARCE1-201ENST00000264640 COL17A1Q9UMD9 1497 aaPredicted RBP12.01□□□□□ -0.49
SMARCE1-201ENST00000264640 GLI2P10070 1586 aa12□□□□□ -0.49
SMARCE1-201ENST00000264640 MAP3K4Q9Y6R4 1608 aa11.99□□□□□ -0.49
SMARCE1-201ENST00000264640 ASXL2Q76L83 1435 aa11.98□□□□□ -0.49
SMARCE1-201ENST00000264640 ABCC2Q92887 1545 aa11.97□□□□□ -0.49
SMARCE1-201ENST00000264640 KIAA0586Q9BVV6 1533 aa11.96□□□□□ -0.49
SMARCE1-201ENST00000264640 PTPRGP23470 1445 aa11.94□□□□□ -0.5
SMARCE1-201ENST00000264640 PLB1Q6P1J6 1458 aa11.94□□□□□ -0.5
SMARCE1-201ENST00000264640 ATXN8OSP0DMR3 200 aa11.93□□□□□ -0.5
SMARCE1-201ENST00000264640 REM2Q8IYK8 340 aaPredicted RBP11.93□□□□□ -0.5
SMARCE1-201ENST00000264640 FBXO41Q8TF61 875 aa11.93□□□□□ -0.5
SMARCE1-201ENST00000264640 KIF21BO75037 1637 aa11.93□□□□□ -0.5
SMARCE1-201ENST00000264640 ZCCHC11Q5TAX3 1644 aaKnown RBP11.92□□□□□ -0.5
SMARCE1-201ENST00000264640 EPRSP07814 1512 aaKnown RBP11.91□□□□□ -0.5
SMARCE1-201ENST00000264640 TEX14Q8IWB6 1497 aa11.9□□□□□ -0.5
SMARCE1-201ENST00000264640 TNIKQ9UKE5 1360 aa11.88□□□□□ -0.51
SMARCE1-201ENST00000264640 UHRF1BP1LA0JNW5 1464 aa11.87□□□□□ -0.51
SMARCE1-201ENST00000264640 IQGAP2Q13576 1575 aa11.87□□□□□ -0.51
SMARCE1-201ENST00000264640 CARMIL2Q6F5E8 1435 aa11.86□□□□□ -0.51
SMARCE1-201ENST00000264640 SUPT5HO00267 1087 aaKnown RBP11.85□□□□□ -0.51
SMARCE1-201ENST00000264640 UACAQ9BZF9 1416 aa11.85□□□□□ -0.51
SMARCE1-201ENST00000264640 PIP4P2Q8N4L2 257 aa11.84□□□□□ -0.51
SMARCE1-201ENST00000264640 KDM5BQ9UGL1 1544 aa11.84□□□□□ -0.51
SMARCE1-201ENST00000264640 IGF1RP08069 1367 aa11.83□□□□□ -0.52
SMARCE1-201ENST00000264640 LMTK3Q96Q04 1460 aa11.83□□□□□ -0.52
SMARCE1-201ENST00000264640 CFAP43Q8NDM7 1665 aa11.81□□□□□ -0.52
SMARCE1-201ENST00000264640 DISP1Q96F81 1524 aa11.81□□□□□ -0.52
SMARCE1-201ENST00000264640 KIF27Q86VH2 1401 aa11.8□□□□□ -0.52
SMARCE1-201ENST00000264640 PITPNM1O00562 1244 aa11.8□□□□□ -0.52
SMARCE1-201ENST00000264640 ADAMTSL3P82987 1691 aa11.79□□□□□ -0.52
SMARCE1-201ENST00000264640 WDR7Q9Y4E6 1490 aa11.79□□□□□ -0.52
SMARCE1-201ENST00000264640 SP7Q8TDD2 431 aaPredicted RBP11.78□□□□□ -0.52
SMARCE1-201ENST00000264640 KIAA0556O60303 1618 aa11.78□□□□□ -0.52
SMARCE1-201ENST00000264640 FXR2P51116 673 aaKnown RBP eCLIP11.77□□□□□ -0.53
SMARCE1-201ENST00000264640 PTPRMP28827 1452 aa11.76□□□□□ -0.53
SMARCE1-201ENST00000264640 PCF11O94913 1555 aaKnown RBP11.76□□□□□ -0.53
SMARCE1-201ENST00000264640 CARMIL1Q5VZK9 1371 aa11.76□□□□□ -0.53
SMARCE1-201ENST00000264640 MADDQ8WXG6 1647 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms