RNA–Protein interactions for RNA: ENST00000263741.11

SDF4-201, Transcript of stromal cell derived factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDF4, Length 2,079 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-201ENST00000263741 RIMBP3CA6NJZ7 1639 aa30.37■■■□□ 2.45
SDF4-201ENST00000263741 RIMBP3BA6NNM3 1639 aa30.37■■■□□ 2.45
SDF4-201ENST00000263741 RIMBP3Q9UFD9 1639 aa30.37■■■□□ 2.45
SDF4-201ENST00000263741 EHMT2Q96KQ7 1210 aa30.35■■■□□ 2.45
SDF4-201ENST00000263741 SHROOM2Q13796 1616 aa30.35■■■□□ 2.45
SDF4-201ENST00000263741 ARHGEF11O15085 1522 aa30.35■■■□□ 2.45
SDF4-201ENST00000263741 KIAA0586Q9BVV6 1533 aa30.33■■■□□ 2.45
SDF4-201ENST00000263741 IQGAP2Q13576 1575 aa30.31■■■□□ 2.44
SDF4-201ENST00000263741 ERCC6L2Q5T890 1561 aa30.31■■■□□ 2.44
SDF4-201ENST00000263741 GOLGA3Q08378 1498 aa30.2■■■□□ 2.43
SDF4-201ENST00000263741 JPH4Q96JJ6 628 aa30.2■■■□□ 2.43
SDF4-201ENST00000263741 PRG4Q92954 1404 aaPredicted RBP30.18■■■□□ 2.42
SDF4-201ENST00000263741 ARAP1Q96P48 1450 aa30.14■■■□□ 2.42
SDF4-201ENST00000263741 UGGT2Q9NYU1 1516 aa30.1■■■□□ 2.41
SDF4-201ENST00000263741 UBTFP17480 764 aaKnown RBP30.07■■■□□ 2.4
SDF4-201ENST00000263741 DISP1Q96F81 1524 aa30.05■■■□□ 2.4
SDF4-201ENST00000263741 KIAA0556O60303 1618 aa30.04■■■□□ 2.4
SDF4-201ENST00000263741 RANGAP1P46060 587 aaPredicted RBP30.03■■■□□ 2.4
SDF4-201ENST00000263741 CYB5RLQ6IPT4 315 aa30■■■□□ 2.39
SDF4-201ENST00000263741 CARMIL2Q6F5E8 1435 aa29.97■■■□□ 2.39
SDF4-201ENST00000263741 TTBK1Q5TCY1 1321 aaPredicted RBP29.95■■■□□ 2.39
SDF4-201ENST00000263741 SAMD9Q5K651 1589 aa29.94■■■□□ 2.38
SDF4-201ENST00000263741 LOC105371045A0A1W2PR82 267 aa29.89■■■□□ 2.37
SDF4-201ENST00000263741 P3H3Q8IVL6 736 aa29.87■■■□□ 2.37
SDF4-201ENST00000263741 TNIKQ9UKE5 1360 aa29.86■■■□□ 2.37
SDF4-201ENST00000263741 PTPRGP23470 1445 aa29.82■■■□□ 2.36
SDF4-201ENST00000263741 EFCAB5A4FU69 1503 aa29.81■■■□□ 2.36
SDF4-201ENST00000263741 FHOD3Q2V2M9 1422 aa29.79■■■□□ 2.36
SDF4-201ENST00000263741 ADCY10Q96PN6 1610 aa29.78■■■□□ 2.36
SDF4-201ENST00000263741 ARHGAP35Q9NRY4 1499 aa29.76■■■□□ 2.35
SDF4-201ENST00000263741 PLB1Q6P1J6 1458 aa29.7■■■□□ 2.34
SDF4-201ENST00000263741 CLIP1P30622 1438 aa29.67■■■□□ 2.34
SDF4-201ENST00000263741 ABCA8O94911 1581 aa29.65■■■□□ 2.34
SDF4-201ENST00000263741 CEP162Q5TB80 1403 aa29.65■■■□□ 2.34
SDF4-201ENST00000263741 UACAQ9BZF9 1416 aa29.64■■■□□ 2.34
SDF4-201ENST00000263741 ABCC2Q92887 1545 aa29.64■■■□□ 2.34
SDF4-201ENST00000263741 RAPGEF6Q8TEU7 1601 aa29.6■■■□□ 2.33
SDF4-201ENST00000263741 UHRF1BP1LA0JNW5 1464 aa29.57■■■□□ 2.32
SDF4-201ENST00000263741 ZCCHC11Q5TAX3 1644 aaKnown RBP29.54■■■□□ 2.32
SDF4-201ENST00000263741 ARID3CA6NKF2 412 aa29.51■■■□□ 2.31
SDF4-201ENST00000263741 PCF11O94913 1555 aaKnown RBP29.48■■■□□ 2.31
SDF4-201ENST00000263741 FMN1Q68DA7 1419 aa29.48■■■□□ 2.31
SDF4-201ENST00000263741 KDM5BQ9UGL1 1544 aa29.47■■■□□ 2.31
SDF4-201ENST00000263741 NUP153P49790 1475 aaKnown RBP29.46■■■□□ 2.31
SDF4-201ENST00000263741 LRRIQ1Q96JM4 1722 aa29.45■■■□□ 2.3
SDF4-201ENST00000263741 NPM1P06748 294 aaKnown RBP eCLIP29.44■■■□□ 2.3
SDF4-201ENST00000263741 MAPKBP1O60336 1514 aa29.42■■■□□ 2.3
SDF4-201ENST00000263741 HECW1Q76N89 1606 aa29.41■■■□□ 2.3
SDF4-201ENST00000263741 ATP10BO94823 1461 aa29.37■■■□□ 2.29
SDF4-201ENST00000263741 ATP1B4Q9UN42 357 aaPredicted RBP29.37■■■□□ 2.29
SDF4-201ENST00000263741 CDK13Q14004 1512 aaKnown RBP29.36■■■□□ 2.29
SDF4-201ENST00000263741 KIF13AQ9H1H9 1805 aa29.35■■■□□ 2.29
SDF4-201ENST00000263741 ASXL2Q76L83 1435 aa29.34■■■□□ 2.29
SDF4-201ENST00000263741 CASKIN1Q8WXD9 1431 aa29.32■■■□□ 2.28
SDF4-201ENST00000263741 FYCO1Q9BQS8 1478 aa29.3■■■□□ 2.28
SDF4-201ENST00000263741 EPRSP07814 1512 aaKnown RBP29.29■■■□□ 2.28
SDF4-201ENST00000263741 DIP2BQ9P265 1576 aa29.28■■■□□ 2.28
SDF4-201ENST00000263741 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.28■■■□□ 2.28
SDF4-201ENST00000263741 HNRNPUL2Q1KMD3 747 aaKnown RBP29.28■■■□□ 2.28
SDF4-201ENST00000263741 TRHP20396 242 aaPredicted RBP29.27■■■□□ 2.28
SDF4-201ENST00000263741 WDR7Q9Y4E6 1490 aa29.24■■■□□ 2.27
SDF4-201ENST00000263741 VPS8Q8N3P4 1428 aa29.23■■■□□ 2.27
SDF4-201ENST00000263741 ABCC10Q5T3U5 1492 aa29.22■■■□□ 2.27
SDF4-201ENST00000263741 CCDC18Q5T9S5 1454 aa29.17■■■□□ 2.26
SDF4-201ENST00000263741 TSPOAP1O95153 1857 aa29.16■■■□□ 2.26
SDF4-201ENST00000263741 FAM69CQ0P6D2 419 aa29.14■■■□□ 2.25
SDF4-201ENST00000263741 KCNH8Q96L42 1107 aa29.13■■■□□ 2.25
SDF4-201ENST00000263741 CFAP43Q8NDM7 1665 aa29.12■■■□□ 2.25
SDF4-201ENST00000263741 MAGI3Q5TCQ9 1506 aa29.11■■■□□ 2.25
SDF4-201ENST00000263741 GLI2P10070 1586 aa29.09■■■□□ 2.25
SDF4-201ENST00000263741 MAP3K4Q9Y6R4 1608 aa29.07■■■□□ 2.24
SDF4-201ENST00000263741 KIF14Q15058 1648 aa29.07■■■□□ 2.24
SDF4-201ENST00000263741 PLEKHD1A6NEE1 506 aa29.06■■■□□ 2.24
SDF4-201ENST00000263741 TIAM1Q13009 1591 aa29.03■■■□□ 2.24
SDF4-201ENST00000263741 PPRC1Q5VV67 1664 aaKnown RBP29.03■■■□□ 2.24
SDF4-201ENST00000263741 TTC37Q6PGP7 1564 aa29.02■■■□□ 2.24
SDF4-201ENST00000263741 ABCA9Q8IUA7 1624 aa29.02■■■□□ 2.24
SDF4-201ENST00000263741 TROQ12816 1431 aaPredicted RBP29.01■■■□□ 2.23
SDF4-201ENST00000263741 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.98■■■□□ 2.233e-6■■■□□ 17.3
SDF4-201ENST00000263741 CDK11AQ9UQ88 783 aaPredicted RBP28.98■■■□□ 2.23
SDF4-201ENST00000263741 EHBP1L1Q8N3D4 1523 aa28.91■■■□□ 2.22
SDF4-201ENST00000263741 MTUS2Q5JR59 1369 aa28.91■■■□□ 2.22
SDF4-201ENST00000263741 CD109Q6YHK3 1445 aa28.91■■■□□ 2.22
SDF4-201ENST00000263741 MYO5CQ9NQX4 1742 aa28.89■■■□□ 2.22
SDF4-201ENST00000263741 MAP3K1Q13233 1512 aa28.87■■■□□ 2.21
SDF4-201ENST00000263741 LRRC9Q6ZRR7 1453 aa28.85■■■□□ 2.21
SDF4-201ENST00000263741 CDC42BPAQ5VT25 1732 aa28.84■■■□□ 2.21
SDF4-201ENST00000263741 KANK4Q5T7N3 995 aaPredicted RBP28.83■■■□□ 2.21
SDF4-201ENST00000263741 SUPT6HQ7KZ85 1726 aaKnown RBP28.82■■■□□ 2.2
SDF4-201ENST00000263741 APLP2Q06481 763 aa28.81■■■□□ 2.2
SDF4-201ENST00000263741 CDC42BPBQ9Y5S2 1711 aa28.8■■■□□ 2.2
SDF4-201ENST00000263741 PREX2Q70Z35 1606 aa28.79■■■□□ 2.2
SDF4-201ENST00000263741 TEX14Q8IWB6 1497 aa28.78■■■□□ 2.2
SDF4-201ENST00000263741 NCOA2Q15596 1464 aa28.74■■■□□ 2.19
SDF4-201ENST00000263741 KDM6BO15054 1643 aa28.72■■■□□ 2.19
SDF4-201ENST00000263741 ARHGAP5Q13017 1502 aa28.72■■■□□ 2.19
SDF4-201ENST00000263741 PLCH2O75038 1416 aa28.71■■■□□ 2.19
SDF4-201ENST00000263741 FANCAO15360 1455 aa28.71■■■□□ 2.19
SDF4-201ENST00000263741 CFAP74Q9C0B2 1584 aa28.7■■■□□ 2.19
SDF4-201ENST00000263741 ITSN2Q9NZM3 1697 aa28.69■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms