RNA–Protein interactions for RNA: ENST00000260810.9

TOPBP1-201, Transcript of DNA topoisomerase II binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOPBP1, Length 5,378 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-201ENST00000260810 NUP160Q12769 1436 aa10.31□□□□□ -0.76
TOPBP1-201ENST00000260810 PCF11O94913 1555 aaKnown RBP10.31□□□□□ -0.76
TOPBP1-201ENST00000260810 KDM5BQ9UGL1 1544 aa10.26□□□□□ -0.77
TOPBP1-201ENST00000260810 ADCY10Q96PN6 1610 aa10.25□□□□□ -0.77
TOPBP1-201ENST00000260810 ABCA8O94911 1581 aa10.25□□□□□ -0.77
TOPBP1-201ENST00000260810 CDC42BPBQ9Y5S2 1711 aa10.24□□□□□ -0.77
TOPBP1-201ENST00000260810 KIAA0556O60303 1618 aa10.24□□□□□ -0.77
TOPBP1-201ENST00000260810 GRIN2BQ13224 1484 aa10.24□□□□□ -0.77
TOPBP1-201ENST00000260810 GAPVD1Q14C86 1478 aa10.24□□□□□ -0.77
TOPBP1-201ENST00000260810 UGGT2Q9NYU1 1516 aa10.24□□□□□ -0.77
TOPBP1-201ENST00000260810 KIF14Q15058 1648 aa10.22□□□□□ -0.77
TOPBP1-201ENST00000260810 CLIP1P30622 1438 aa10.22□□□□□ -0.77
TOPBP1-201ENST00000260810 CDC42BPAQ5VT25 1732 aa10.22□□□□□ -0.77
TOPBP1-201ENST00000260810 ABCC2Q92887 1545 aa10.21□□□□□ -0.78
TOPBP1-201ENST00000260810 PTPRKQ15262 1439 aa10.21□□□□□ -0.78
TOPBP1-201ENST00000260810 GRIN2AQ12879 1464 aa10.21□□□□□ -0.78
TOPBP1-201ENST00000260810 KIF13AQ9H1H9 1805 aa10.2□□□□□ -0.78
TOPBP1-201ENST00000260810 CEP162Q5TB80 1403 aa10.19□□□□□ -0.78
TOPBP1-201ENST00000260810 SUPT6HQ7KZ85 1726 aaKnown RBP10.17□□□□□ -0.78
TOPBP1-201ENST00000260810 NUP153P49790 1475 aaKnown RBP10.16□□□□□ -0.78
TOPBP1-201ENST00000260810 PDS5BQ9NTI5 1447 aa10.16□□□□□ -0.78
TOPBP1-201ENST00000260810 IFT140Q96RY7 1462 aa10.15□□□□□ -0.78
TOPBP1-201ENST00000260810 TNIKQ9UKE5 1360 aa10.14□□□□□ -0.79
TOPBP1-201ENST00000260810 IQGAP2Q13576 1575 aa10.11□□□□□ -0.79
TOPBP1-201ENST00000260810 KANK4Q5T7N3 995 aaPredicted RBP10.11□□□□□ -0.79
TOPBP1-201ENST00000260810 TIAM1Q13009 1591 aa10.1□□□□□ -0.79
TOPBP1-201ENST00000260810 CDK13Q14004 1512 aaKnown RBP10.08□□□□□ -0.8
TOPBP1-201ENST00000260810 TTC37Q6PGP7 1564 aa10.08□□□□□ -0.8
TOPBP1-201ENST00000260810 SYNJ2O15056 1496 aa10.08□□□□□ -0.8
TOPBP1-201ENST00000260810 PLB1Q6P1J6 1458 aa10.08□□□□□ -0.8
TOPBP1-201ENST00000260810 BRCA2P51587 3418 aa10.07□□□□□ -0.8
TOPBP1-201ENST00000260810 ARHGEF12Q9NZN5 1544 aa10.07□□□□□ -0.8
TOPBP1-201ENST00000260810 CROCC2H7BZ55 1655 aa10.06□□□□□ -0.8
TOPBP1-201ENST00000260810 MAGI1Q96QZ7 1491 aaPredicted RBP10.06□□□□□ -0.8
TOPBP1-201ENST00000260810 FRMPD1Q5SYB0 1578 aa10.05□□□□□ -0.8
TOPBP1-201ENST00000260810 ABCC10Q5T3U5 1492 aa10.05□□□□□ -0.8
TOPBP1-201ENST00000260810 GOLGA3Q08378 1498 aa10.05□□□□□ -0.8
TOPBP1-201ENST00000260810 CARMIL1Q5VZK9 1371 aa10.04□□□□□ -0.8
TOPBP1-201ENST00000260810 ZCCHC11Q5TAX3 1644 aaKnown RBP10.04□□□□□ -0.8
TOPBP1-201ENST00000260810 CSRNP3Q8WYN3 585 aa10.04□□□□□ -0.8
TOPBP1-201ENST00000260810 FHOD3Q2V2M9 1422 aa10.03□□□□□ -0.8
TOPBP1-201ENST00000260810 RIMBP3CA6NJZ7 1639 aa10.03□□□□□ -0.8
TOPBP1-201ENST00000260810 RIMBP3BA6NNM3 1639 aa10.03□□□□□ -0.8
TOPBP1-201ENST00000260810 RIMBP3Q9UFD9 1639 aa10.03□□□□□ -0.8
TOPBP1-201ENST00000260810 MROH1Q8NDA8 1641 aa10.02□□□□□ -0.81
TOPBP1-201ENST00000260810 FHAD1B1AJZ9 1412 aa10.02□□□□□ -0.81
TOPBP1-201ENST00000260810 KIF27Q86VH2 1401 aa10.02□□□□□ -0.81
TOPBP1-201ENST00000260810 PHLDB1Q86UU1 1377 aa10□□□□□ -0.81
TOPBP1-201ENST00000260810 EEA1Q15075 1411 aa10□□□□□ -0.81
TOPBP1-201ENST00000260810 TRIM41Q8WV44 630 aa10□□□□□ -0.81
TOPBP1-201ENST00000260810 MAPKBP1O60336 1514 aa10□□□□□ -0.81
TOPBP1-201ENST00000260810 RAPGEF6Q8TEU7 1601 aa9.99□□□□□ -0.81
TOPBP1-201ENST00000260810 KIAA0586Q9BVV6 1533 aa9.99□□□□□ -0.81
TOPBP1-201ENST00000260810 MAP3K1Q13233 1512 aa9.98□□□□□ -0.81
TOPBP1-201ENST00000260810 VPS8Q8N3P4 1428 aa9.97□□□□□ -0.81
TOPBP1-201ENST00000260810 CENPFP49454 3210 aa9.97□□□□□ -0.81
TOPBP1-201ENST00000260810 FAM9AQ8IZU1 332 aaPredicted RBP9.97□□□□□ -0.81
TOPBP1-201ENST00000260810 ATP10BO94823 1461 aa9.96□□□□□ -0.82
TOPBP1-201ENST00000260810 SAMD9LQ8IVG5 1584 aa9.95□□□□□ -0.82
TOPBP1-201ENST00000260810 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.95□□□□□ -0.821e-8■□□□□ 11.1
TOPBP1-201ENST00000260810 COL17A1Q9UMD9 1497 aaPredicted RBP9.94□□□□□ -0.82
TOPBP1-201ENST00000260810 ADGBQ8N7X0 1667 aa9.93□□□□□ -0.82
TOPBP1-201ENST00000260810 ABCA9Q8IUA7 1624 aa9.93□□□□□ -0.82
TOPBP1-201ENST00000260810 MAP3K4Q9Y6R4 1608 aa9.93□□□□□ -0.82
TOPBP1-201ENST00000260810 LRRC9Q6ZRR7 1453 aa9.92□□□□□ -0.82
TOPBP1-201ENST00000260810 RICTORQ6R327 1708 aa9.92□□□□□ -0.82
TOPBP1-201ENST00000260810 EFCAB5A4FU69 1503 aa9.92□□□□□ -0.82
TOPBP1-201ENST00000260810 EPRSP07814 1512 aaKnown RBP9.92□□□□□ -0.82
TOPBP1-201ENST00000260810 MBD5Q9P267 1494 aa9.92□□□□□ -0.82
TOPBP1-201ENST00000260810 RRBP1Q9P2E9 1410 aaKnown RBP9.91□□□□□ -0.82
TOPBP1-201ENST00000260810 PREX2Q70Z35 1606 aa9.89□□□□□ -0.83
TOPBP1-201ENST00000260810 KIDINS220Q9ULH0 1771 aa9.89□□□□□ -0.83
TOPBP1-201ENST00000260810 LAMA3Q16787 3333 aa9.88□□□□□ -0.83
TOPBP1-201ENST00000260810 CASKIN1Q8WXD9 1431 aa9.87□□□□□ -0.83
TOPBP1-201ENST00000260810 USP34Q70CQ2 3546 aa9.87□□□□□ -0.83
TOPBP1-201ENST00000260810 FYCO1Q9BQS8 1478 aa9.86□□□□□ -0.83
TOPBP1-201ENST00000260810 GCC2Q8IWJ2 1684 aa9.86□□□□□ -0.83
TOPBP1-201ENST00000260810 TCOF1Q13428 1488 aaKnown RBP9.84□□□□□ -0.83
TOPBP1-201ENST00000260810 DEPDC5O75140 1603 aa9.84□□□□□ -0.83
TOPBP1-201ENST00000260810 ERCC6Q03468 1493 aa9.83□□□□□ -0.84
TOPBP1-201ENST00000260810 EHMT2Q96KQ7 1210 aa9.83□□□□□ -0.84
TOPBP1-201ENST00000260810 BCORL1Q5H9F3 1711 aa9.82□□□□□ -0.84
TOPBP1-201ENST00000260810 DIP2BQ9P265 1576 aa9.82□□□□□ -0.84
TOPBP1-201ENST00000260810 PRG4Q92954 1404 aaPredicted RBP9.82□□□□□ -0.84
TOPBP1-201ENST00000260810 LAMA2P24043 3122 aaKnown RBP9.82□□□□□ -0.84
TOPBP1-201ENST00000260810 PPARGC1BQ86YN6 1023 aaKnown RBP9.81□□□□□ -0.84
TOPBP1-201ENST00000260810 ITSN2Q9NZM3 1697 aa9.8□□□□□ -0.84
TOPBP1-201ENST00000260810 DNMT1P26358 1616 aaKnown RBP9.8□□□□□ -0.84
TOPBP1-201ENST00000260810 GPATCH8Q9UKJ3 1502 aaKnown RBP9.8□□□□□ -0.84
TOPBP1-201ENST00000260810 VWDEQ8N2E2 1590 aa9.79□□□□□ -0.84
TOPBP1-201ENST00000260810 INO80Q9ULG1 1556 aaPredicted RBP9.79□□□□□ -0.84
TOPBP1-201ENST00000260810 UHRF1BP1LA0JNW5 1464 aa9.79□□□□□ -0.84
TOPBP1-201ENST00000260810 MYO5BQ9ULV0 1848 aa9.78□□□□□ -0.84
TOPBP1-201ENST00000260810 PLXNC1O60486 1568 aa9.78□□□□□ -0.84
TOPBP1-201ENST00000260810 SETD1AO15047 1707 aaKnown RBP9.77□□□□□ -0.84
TOPBP1-201ENST00000260810 IFT172Q9UG01 1749 aa9.77□□□□□ -0.84
TOPBP1-201ENST00000260810 PTPN23Q9H3S7 1636 aa9.77□□□□□ -0.85
TOPBP1-201ENST00000260810 PLA2R1Q13018 1463 aa9.76□□□□□ -0.85
TOPBP1-201ENST00000260810 MAGI2Q86UL8 1455 aa9.75□□□□□ -0.85
TOPBP1-201ENST00000260810 KDM5CP41229 1560 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms