RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 JPH4Q96JJ6 628 aa27.92■■■□□ 2.06
SDCBP-201ENST00000260130 KIAA0586Q9BVV6 1533 aa27.91■■■□□ 2.06
SDCBP-201ENST00000260130 PRXQ9BXM0 1461 aa27.91■■■□□ 2.06
SDCBP-201ENST00000260130 FAM9AQ8IZU1 332 aaPredicted RBP27.9■■■□□ 2.06
SDCBP-201ENST00000260130 SHROOM2Q13796 1616 aa27.87■■■□□ 2.05
SDCBP-201ENST00000260130 CYB5RLQ6IPT4 315 aa27.86■■■□□ 2.05
SDCBP-201ENST00000260130 ARAP1Q96P48 1450 aa27.84■■■□□ 2.05
SDCBP-201ENST00000260130 PRG4Q92954 1404 aaPredicted RBP27.81■■■□□ 2.04
SDCBP-201ENST00000260130 ERCC6L2Q5T890 1561 aa27.79■■■□□ 2.04
SDCBP-201ENST00000260130 IQGAP2Q13576 1575 aa27.73■■■□□ 2.03
SDCBP-201ENST00000260130 CARMIL2Q6F5E8 1435 aa27.63■■■□□ 2.01
SDCBP-201ENST00000260130 CTTNBP2Q8WZ74 1663 aa27.63■■■□□ 2.01
SDCBP-201ENST00000260130 KIF21BO75037 1637 aa27.62■■■□□ 2.01
SDCBP-201ENST00000260130 UGGT2Q9NYU1 1516 aa27.6■■■□□ 2.01
SDCBP-201ENST00000260130 DISP1Q96F81 1524 aa27.55■■■□□ 2
SDCBP-201ENST00000260130 EHMT2Q96KQ7 1210 aa27.53■■■□□ 2
SDCBP-201ENST00000260130 TNIKQ9UKE5 1360 aa27.53■■■□□ 2
SDCBP-201ENST00000260130 PTPRGP23470 1445 aa27.51■■□□□ 1.99
SDCBP-201ENST00000260130 GOLGA3Q08378 1498 aa27.5■■□□□ 1.99
SDCBP-201ENST00000260130 TTBK1Q5TCY1 1321 aaPredicted RBP27.48■■□□□ 1.99
SDCBP-201ENST00000260130 UBTFP17480 764 aaKnown RBP27.48■■□□□ 1.99
SDCBP-201ENST00000260130 KIAA0556O60303 1618 aa27.46■■□□□ 1.99
SDCBP-201ENST00000260130 RANGAP1P46060 587 aaPredicted RBP27.39■■□□□ 1.97
SDCBP-201ENST00000260130 P3H3Q8IVL6 736 aa27.36■■□□□ 1.97
SDCBP-201ENST00000260130 NPM1P06748 294 aaKnown RBP eCLIP27.33■■□□□ 1.97
SDCBP-201ENST00000260130 ADCY10Q96PN6 1610 aa27.32■■□□□ 1.96
SDCBP-201ENST00000260130 UACAQ9BZF9 1416 aa27.32■■□□□ 1.96
SDCBP-201ENST00000260130 SAMD9Q5K651 1589 aa27.32■■□□□ 1.96
SDCBP-201ENST00000260130 UHRF1BP1LA0JNW5 1464 aa27.27■■□□□ 1.96
SDCBP-201ENST00000260130 TRHP20396 242 aaPredicted RBP27.26■■□□□ 1.95
SDCBP-201ENST00000260130 EFCAB5A4FU69 1503 aa27.23■■□□□ 1.95
SDCBP-201ENST00000260130 ABCC2Q92887 1545 aa27.23■■□□□ 1.95
SDCBP-201ENST00000260130 PLB1Q6P1J6 1458 aa27.22■■□□□ 1.95
SDCBP-201ENST00000260130 FHOD3Q2V2M9 1422 aa27.2■■□□□ 1.94
SDCBP-201ENST00000260130 ABCA8O94911 1581 aa27.17■■□□□ 1.94
SDCBP-201ENST00000260130 MAPKBP1O60336 1514 aa27.15■■□□□ 1.94
SDCBP-201ENST00000260130 KDM5BQ9UGL1 1544 aa27.14■■□□□ 1.93
SDCBP-201ENST00000260130 ARHGAP35Q9NRY4 1499 aa27.13■■□□□ 1.93
SDCBP-201ENST00000260130 LOC105371045A0A1W2PR82 267 aa27.09■■□□□ 1.93
SDCBP-201ENST00000260130 ASXL2Q76L83 1435 aa27.04■■□□□ 1.92
SDCBP-201ENST00000260130 ZCCHC11Q5TAX3 1644 aaKnown RBP27.04■■□□□ 1.92
SDCBP-201ENST00000260130 RAPGEF6Q8TEU7 1601 aa27.04■■□□□ 1.92
SDCBP-201ENST00000260130 ABCC10Q5T3U5 1492 aa27.03■■□□□ 1.92
SDCBP-201ENST00000260130 CLIP1P30622 1438 aa27.02■■□□□ 1.92
SDCBP-201ENST00000260130 FMN1Q68DA7 1419 aa27.02■■□□□ 1.92
SDCBP-201ENST00000260130 ARID3CA6NKF2 412 aa27.01■■□□□ 1.91
SDCBP-201ENST00000260130 FAM69CQ0P6D2 419 aa27.01■■□□□ 1.91
SDCBP-201ENST00000260130 ATP10BO94823 1461 aa26.99■■□□□ 1.91
SDCBP-201ENST00000260130 NUP153P49790 1475 aaKnown RBP26.97■■□□□ 1.91
SDCBP-201ENST00000260130 DIP2BQ9P265 1576 aa26.94■■□□□ 1.9
SDCBP-201ENST00000260130 KIF13AQ9H1H9 1805 aa26.93■■□□□ 1.9
SDCBP-201ENST00000260130 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.92■■□□□ 1.9
SDCBP-201ENST00000260130 HNRNPUL2Q1KMD3 747 aaKnown RBP26.92■■□□□ 1.9
SDCBP-201ENST00000260130 CEP162Q5TB80 1403 aa26.92■■□□□ 1.9
SDCBP-201ENST00000260130 WDR7Q9Y4E6 1490 aa26.91■■□□□ 1.9
SDCBP-201ENST00000260130 ATP1B4Q9UN42 357 aaPredicted RBP26.9■■□□□ 1.9
SDCBP-201ENST00000260130 EPRSP07814 1512 aaKnown RBP26.88■■□□□ 1.89
SDCBP-201ENST00000260130 KCNH8Q96L42 1107 aa26.85■■□□□ 1.89
SDCBP-201ENST00000260130 GLI2P10070 1586 aa26.84■■□□□ 1.89
SDCBP-201ENST00000260130 HECW1Q76N89 1606 aa26.82■■□□□ 1.88
SDCBP-201ENST00000260130 CASKIN1Q8WXD9 1431 aa26.81■■□□□ 1.88
SDCBP-201ENST00000260130 PLEKHD1A6NEE1 506 aa26.8■■□□□ 1.88
SDCBP-201ENST00000260130 CDK13Q14004 1512 aaKnown RBP26.78■■□□□ 1.88
SDCBP-201ENST00000260130 PCF11O94913 1555 aaKnown RBP26.76■■□□□ 1.87
SDCBP-201ENST00000260130 FYCO1Q9BQS8 1478 aa26.73■■□□□ 1.87
SDCBP-201ENST00000260130 CDK11AQ9UQ88 783 aaPredicted RBP26.73■■□□□ 1.87
SDCBP-201ENST00000260130 MAP3K4Q9Y6R4 1608 aa26.7■■□□□ 1.86
SDCBP-201ENST00000260130 TSPOAP1O95153 1857 aa26.68■■□□□ 1.86
SDCBP-201ENST00000260130 CD109Q6YHK3 1445 aa26.68■■□□□ 1.86
SDCBP-201ENST00000260130 CCDC18Q5T9S5 1454 aa26.68■■□□□ 1.86
SDCBP-201ENST00000260130 LRRIQ1Q96JM4 1722 aa26.65■■□□□ 1.86
SDCBP-201ENST00000260130 CFAP43Q8NDM7 1665 aa26.64■■□□□ 1.86
SDCBP-201ENST00000260130 PPRC1Q5VV67 1664 aaKnown RBP26.62■■□□□ 1.85
SDCBP-201ENST00000260130 ABCA9Q8IUA7 1624 aa26.62■■□□□ 1.85
SDCBP-201ENST00000260130 TEX14Q8IWB6 1497 aa26.61■■□□□ 1.85
SDCBP-201ENST00000260130 MAGI3Q5TCQ9 1506 aa26.6■■□□□ 1.85
SDCBP-201ENST00000260130 TROQ12816 1431 aaPredicted RBP26.59■■□□□ 1.85
SDCBP-201ENST00000260130 VPS8Q8N3P4 1428 aa26.59■■□□□ 1.85
SDCBP-201ENST00000260130 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.55■■□□□ 1.84
SDCBP-201ENST00000260130 KDM6BO15054 1643 aa26.5■■□□□ 1.83
SDCBP-201ENST00000260130 TTC37Q6PGP7 1564 aa26.48■■□□□ 1.83
SDCBP-201ENST00000260130 KIF14Q15058 1648 aa26.48■■□□□ 1.83
SDCBP-201ENST00000260130 MTUS2Q5JR59 1369 aa26.44■■□□□ 1.82
SDCBP-201ENST00000260130 COL17A1Q9UMD9 1497 aaPredicted RBP26.44■■□□□ 1.82
SDCBP-201ENST00000260130 PHLDB1Q86UU1 1377 aa26.44■■□□□ 1.82
SDCBP-201ENST00000260130 PLCH2O75038 1416 aa26.43■■□□□ 1.82
SDCBP-201ENST00000260130 NEO1Q92859 1461 aa26.42■■□□□ 1.82
SDCBP-201ENST00000260130 FANCAO15360 1455 aa26.39■■□□□ 1.82
SDCBP-201ENST00000260130 TIAM1Q13009 1591 aa26.38■■□□□ 1.81
SDCBP-201ENST00000260130 ARAP3Q8WWN8 1544 aa26.37■■□□□ 1.81
SDCBP-201ENST00000260130 EFCAB2Q5VUJ9 269 aa26.36■■□□□ 1.81
SDCBP-201ENST00000260130 AKNAQ7Z591 1439 aa26.35■■□□□ 1.81
SDCBP-201ENST00000260130 EHBP1L1Q8N3D4 1523 aa26.35■■□□□ 1.81
SDCBP-201ENST00000260130 MYO5CQ9NQX4 1742 aa26.34■■□□□ 1.81
SDCBP-201ENST00000260130 MAP3K1Q13233 1512 aa26.34■■□□□ 1.81
SDCBP-201ENST00000260130 APLP2Q06481 763 aa26.34■■□□□ 1.81
SDCBP-201ENST00000260130 CFAP74Q9C0B2 1584 aa26.32■■□□□ 1.8
SDCBP-201ENST00000260130 ARHGAP5Q13017 1502 aa26.29■■□□□ 1.8
SDCBP-201ENST00000260130 LRRC9Q6ZRR7 1453 aa26.29■■□□□ 1.8
SDCBP-201ENST00000260130 RAPGEF3O95398 923 aa26.29■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms