RNA–Protein interactions for RNA: ENST00000253251.12

UBE4B-201, Transcript of ubiquitination factor E4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE4B, Length 4,772 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-201ENST00000253251 EIF4G1Q04637 1599 aaKnown RBP20.63■□□□□ 0.89
UBE4B-201ENST00000253251 NEFMP07197 916 aa20.62■□□□□ 0.89
UBE4B-201ENST00000253251 CLSPNQ9HAW4 1339 aa20.62■□□□□ 0.89
UBE4B-201ENST00000253251 CHGAP10645 457 aaKnown RBP20.62■□□□□ 0.89
UBE4B-201ENST00000253251 KCNH8Q96L42 1107 aa20.61■□□□□ 0.89
UBE4B-201ENST00000253251 FMN1Q68DA7 1419 aa20.6■□□□□ 0.89
UBE4B-201ENST00000253251 RRP7BPQ9NSQ0 103 aa20.59■□□□□ 0.89
UBE4B-201ENST00000253251 RAPGEF2Q9Y4G8 1499 aa20.58■□□□□ 0.89
UBE4B-201ENST00000253251 FANCD2Q9BXW9 1451 aa20.58■□□□□ 0.88
UBE4B-201ENST00000253251 TDRD9Q8NDG6 1382 aaKnown RBP20.58■□□□□ 0.88
UBE4B-201ENST00000253251 CCNB3Q8WWL7 1395 aa20.58■□□□□ 0.88
UBE4B-201ENST00000253251 EIF4G2P78344 907 aaKnown RBP eCLIP20.47■□□□□ 0.874e-6■□□□□ 10.7
UBE4B-201ENST00000253251 ARHGAP35Q9NRY4 1499 aa20.46■□□□□ 0.87
UBE4B-201ENST00000253251 DDX10Q13206 875 aaKnown RBP20.44■□□□□ 0.86
UBE4B-201ENST00000253251 TIMELESSQ9UNS1 1208 aa20.42■□□□□ 0.86
UBE4B-201ENST00000253251 KDM2AQ9Y2K7 1162 aa20.39■□□□□ 0.86
UBE4B-201ENST00000253251 GTF3C3Q9Y5Q9 886 aa20.37■□□□□ 0.85
UBE4B-201ENST00000253251 HMGXB3Q12766 1538 aa20.37■□□□□ 0.85
UBE4B-201ENST00000253251 ZBTB47Q9UFB7 747 aaPredicted RBP20.35■□□□□ 0.85
UBE4B-201ENST00000253251 CANXP27824 592 aaKnown RBP20.34■□□□□ 0.85
UBE4B-201ENST00000253251 CDCA8Q53HL2 280 aa20.32■□□□□ 0.84
UBE4B-201ENST00000253251 SETD5Q9C0A6 1442 aa20.32■□□□□ 0.84
UBE4B-201ENST00000253251 FGD5Q6ZNL6 1462 aa20.31■□□□□ 0.84
UBE4B-201ENST00000253251 TMC1Q8TDI8 760 aa20.3■□□□□ 0.84
UBE4B-201ENST00000253251 CFTRP13569 1480 aa20.29■□□□□ 0.84
UBE4B-201ENST00000253251 KANK1Q14678 1352 aa20.28■□□□□ 0.84
UBE4B-201ENST00000253251 KANK4Q5T7N3 995 aaPredicted RBP20.26■□□□□ 0.83
UBE4B-201ENST00000253251 SLC24A1O60721 1099 aa20.25■□□□□ 0.83
UBE4B-201ENST00000253251 GAPVD1Q14C86 1478 aa20.25■□□□□ 0.83
UBE4B-201ENST00000253251 HNRNPUQ00839 825 aaKnown RBP eCLIP20.25■□□□□ 0.83
UBE4B-201ENST00000253251 CCDC18Q5T9S5 1454 aa20.25■□□□□ 0.83
UBE4B-201ENST00000253251 FHOD3Q2V2M9 1422 aa20.24■□□□□ 0.83
UBE4B-201ENST00000253251 JPH4Q96JJ6 628 aa20.24■□□□□ 0.83
UBE4B-201ENST00000253251 PPP1R15AO75807 674 aaPredicted RBP20.24■□□□□ 0.83
UBE4B-201ENST00000253251 RSPH4AQ5TD94 716 aa20.24■□□□□ 0.83
UBE4B-201ENST00000253251 IGF1RP08069 1367 aa20.24■□□□□ 0.83
UBE4B-201ENST00000253251 EFCAB2Q5VUJ9 269 aa20.23■□□□□ 0.83
UBE4B-201ENST00000253251 RUSC2Q8N2Y8 1516 aa20.21■□□□□ 0.83
UBE4B-201ENST00000253251 MRS2Q9HD23 443 aa20.2■□□□□ 0.82
UBE4B-201ENST00000253251 WDR43Q15061 677 aaKnown RBP eCLIP20.2■□□□□ 0.82
UBE4B-201ENST00000253251 RGL3Q3MIN7 710 aa20.19■□□□□ 0.82
UBE4B-201ENST00000253251 FAM9BQ8IZU0 186 aa20.19■□□□□ 0.82
UBE4B-201ENST00000253251 ANKRD30AQ9BXX3 1397 aa20.18■□□□□ 0.82
UBE4B-201ENST00000253251 CARD11Q9BXL7 1154 aa20.17■□□□□ 0.82
UBE4B-201ENST00000253251 PLPPR3Q6T4P5 718 aa20.17■□□□□ 0.82
UBE4B-201ENST00000253251 ARID4BQ4LE39 1312 aaPredicted RBP20.15■□□□□ 0.82
UBE4B-201ENST00000253251 CC2D2AQ9P2K1 1620 aa20.13■□□□□ 0.81
UBE4B-201ENST00000253251 BICRAQ9NZM4 1560 aa20.12■□□□□ 0.81
UBE4B-201ENST00000253251 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.12■□□□□ 0.81
UBE4B-201ENST00000253251 SIN3AQ96ST3 1273 aa20.12■□□□□ 0.81
UBE4B-201ENST00000253251 RAD54L2Q9Y4B4 1467 aa20.1■□□□□ 0.81
UBE4B-201ENST00000253251 RTL5Q5HYW3 569 aaPredicted RBP20.09■□□□□ 0.81
UBE4B-201ENST00000253251 MIER1Q8N108 512 aa20.09■□□□□ 0.81
UBE4B-201ENST00000253251 ERICH3Q5RHP9 1530 aa20.09■□□□□ 0.81
UBE4B-201ENST00000253251 PTPRGP23470 1445 aa20.08■□□□□ 0.8
UBE4B-201ENST00000253251 RAB3GAP2Q9H2M9 1393 aa20.08■□□□□ 0.8
UBE4B-201ENST00000253251 HDGFP51858 240 aaKnown RBP20.07■□□□□ 0.8
UBE4B-201ENST00000253251 KIF21BO75037 1637 aa20.06■□□□□ 0.8
UBE4B-201ENST00000253251 GRIN2BQ13224 1484 aa20.06■□□□□ 0.8
UBE4B-201ENST00000253251 HIRIP3Q9BW71 556 aaPredicted RBP20.05■□□□□ 0.8
UBE4B-201ENST00000253251 MRC2Q9UBG0 1479 aa20.05■□□□□ 0.8
UBE4B-201ENST00000253251 KNSTRNQ9Y448 316 aa20.04■□□□□ 0.8
UBE4B-201ENST00000253251 CFAP53Q96M91 514 aa20.02■□□□□ 0.8
UBE4B-201ENST00000253251 TOP2BQ02880 1626 aa20.02■□□□□ 0.8
UBE4B-201ENST00000253251 PKD2Q13563 968 aa20.02■□□□□ 0.8
UBE4B-201ENST00000253251 FKBP8Q14318 412 aa20■□□□□ 0.79
UBE4B-201ENST00000253251 MPHOSPH9Q99550 1183 aa20■□□□□ 0.79
UBE4B-201ENST00000253251 IFT140Q96RY7 1462 aa20■□□□□ 0.79
UBE4B-201ENST00000253251 SYNJ1O43426 1573 aa19.99■□□□□ 0.79
UBE4B-201ENST00000253251 NUP155O75694 1391 aa19.99■□□□□ 0.79
UBE4B-201ENST00000253251 DCAF11Q8TEB1 546 aa19.98■□□□□ 0.79
UBE4B-201ENST00000253251 PEG3Q9GZU2 1588 aa19.97■□□□□ 0.79
UBE4B-201ENST00000253251 TMF1P82094 1093 aa19.96■□□□□ 0.79
UBE4B-201ENST00000253251 TOPBP1Q92547 1522 aa19.96■□□□□ 0.79
UBE4B-201ENST00000253251 SPAG9O60271 1321 aaKnown RBP19.94■□□□□ 0.78
UBE4B-201ENST00000253251 OSCARQ8IYS5 282 aa19.94■□□□□ 0.78
UBE4B-201ENST00000253251 POGKQ9P215 609 aa19.94■□□□□ 0.78
UBE4B-201ENST00000253251 AQRO60306 1485 aaKnown RBP eCLIP19.93■□□□□ 0.788e-7■■■□□ 16
UBE4B-201ENST00000253251 DNMBPQ6XZF7 1577 aa19.93■□□□□ 0.78
UBE4B-201ENST00000253251 CUX1P39880 1505 aa19.92■□□□□ 0.78
UBE4B-201ENST00000253251 ANP32AP39687 249 aaKnown RBP19.91■□□□□ 0.78
UBE4B-201ENST00000253251 LAMC3Q9Y6N6 1575 aa19.9■□□□□ 0.78
UBE4B-201ENST00000253251 SALL2Q9Y467 1007 aaPredicted RBP19.9■□□□□ 0.78
UBE4B-201ENST00000253251 PRXQ9BXM0 1461 aa19.9■□□□□ 0.78
UBE4B-201ENST00000253251 CASKIN1Q8WXD9 1431 aa19.9■□□□□ 0.78
UBE4B-201ENST00000253251 NESP48681 1621 aa19.89■□□□□ 0.78
UBE4B-201ENST00000253251 GGT6Q6P531 493 aa19.89■□□□□ 0.77
UBE4B-201ENST00000253251 EFCAB5A4FU69 1503 aa19.89■□□□□ 0.77
UBE4B-201ENST00000253251 HNRNPMP52272 730 aaKnown RBP eCLIP19.88■□□□□ 0.77
UBE4B-201ENST00000253251 C14orf37Q86TY3 774 aa19.88■□□□□ 0.77
UBE4B-201ENST00000253251 POLA1P09884 1462 aaPredicted RBP19.88■□□□□ 0.77
UBE4B-201ENST00000253251 TRHP20396 242 aaPredicted RBP19.87■□□□□ 0.77
UBE4B-201ENST00000253251 CCDC136Q96JN2 1154 aa19.85■□□□□ 0.77
UBE4B-201ENST00000253251 NUDCQ9Y266 331 aa19.85■□□□□ 0.77
UBE4B-201ENST00000253251 MYOM3Q5VTT5 1437 aa19.85■□□□□ 0.77
UBE4B-201ENST00000253251 CCER2I3L3R5 266 aa19.83■□□□□ 0.76
UBE4B-201ENST00000253251 KIF3BO15066 747 aa19.83■□□□□ 0.76
UBE4B-201ENST00000253251 FYCO1Q9BQS8 1478 aa19.82■□□□□ 0.76
UBE4B-201ENST00000253251 UPF2Q9HAU5 1272 aaKnown RBP19.82■□□□□ 0.76
UBE4B-201ENST00000253251 HSPA5P11021 654 aaKnown RBP19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 6.1 ms