RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 CUL7Q14999 1698 aa25.73■■□□□ 1.71
FOXA1-201ENST00000250448 PBRM1Q86U86 1689 aa25.68■■□□□ 1.7
FOXA1-201ENST00000250448 ARAP1Q96P48 1450 aa25.67■■□□□ 1.7
FOXA1-201ENST00000250448 VPS8Q8N3P4 1428 aa25.66■■□□□ 1.7
FOXA1-201ENST00000250448 ACIN1Q9UKV3 1341 aaKnown RBP25.65■■□□□ 1.7
FOXA1-201ENST00000250448 P3H3Q8IVL6 736 aa25.65■■□□□ 1.7
FOXA1-201ENST00000250448 ARHGAP35Q9NRY4 1499 aa25.64■■□□□ 1.7
FOXA1-201ENST00000250448 GRIN2BQ13224 1484 aa25.62■■□□□ 1.69
FOXA1-201ENST00000250448 EIF4G3O43432 1585 aaKnown RBP25.61■■□□□ 1.69
FOXA1-201ENST00000250448 DIEXFQ68CQ4 756 aaKnown RBP25.58■■□□□ 1.68
FOXA1-201ENST00000250448 NEUROD1Q13562 356 aa25.55■■□□□ 1.68
FOXA1-201ENST00000250448 FHAD1B1AJZ9 1412 aa25.55■■□□□ 1.68
FOXA1-201ENST00000250448 ADAMTS12P58397 1594 aa25.54■■□□□ 1.68
FOXA1-201ENST00000250448 SNAPC4Q5SXM2 1469 aa25.54■■□□□ 1.68
FOXA1-201ENST00000250448 CTTNBP2Q8WZ74 1663 aa25.52■■□□□ 1.68
FOXA1-201ENST00000250448 APLP2Q06481 763 aa25.5■■□□□ 1.67
FOXA1-201ENST00000250448 FBLN2P98095 1184 aa25.48■■□□□ 1.67
FOXA1-201ENST00000250448 FHOD3Q2V2M9 1422 aa25.45■■□□□ 1.67
FOXA1-201ENST00000250448 CENPBP07199 599 aaPredicted RBP25.45■■□□□ 1.66
FOXA1-201ENST00000250448 CHMP7Q8WUX9 453 aaPredicted RBP25.39■■□□□ 1.66
FOXA1-201ENST00000250448 ATP1B4Q9UN42 357 aaPredicted RBP25.39■■□□□ 1.66
FOXA1-201ENST00000250448 KANK4Q5T7N3 995 aaPredicted RBP25.38■■□□□ 1.65
FOXA1-201ENST00000250448 GRIN2AQ12879 1464 aa25.35■■□□□ 1.65
FOXA1-201ENST00000250448 MAGI1Q96QZ7 1491 aaPredicted RBP25.34■■□□□ 1.65
FOXA1-201ENST00000250448 GTF3C3Q9Y5Q9 886 aa25.33■■□□□ 1.65
FOXA1-201ENST00000250448 EFCAB5A4FU69 1503 aa25.31■■□□□ 1.64
FOXA1-201ENST00000250448 ZNF316A6NFI3 1004 aaPredicted RBP25.3■■□□□ 1.64
FOXA1-201ENST00000250448 IQGAP2Q13576 1575 aa25.3■■□□□ 1.64
FOXA1-201ENST00000250448 SYNJ2O15056 1496 aa25.29■■□□□ 1.64
FOXA1-201ENST00000250448 PCF11O94913 1555 aaKnown RBP25.26■■□□□ 1.63
FOXA1-201ENST00000250448 SAMD9Q5K651 1589 aa25.25■■□□□ 1.63
FOXA1-201ENST00000250448 CEP170Q5SW79 1584 aa25.22■■□□□ 1.63
FOXA1-201ENST00000250448 KIAA0586Q9BVV6 1533 aa25.2■■□□□ 1.62
FOXA1-201ENST00000250448 FMN1Q68DA7 1419 aa25.15■■□□□ 1.62
FOXA1-201ENST00000250448 TIAM1Q13009 1591 aa25.14■■□□□ 1.62
FOXA1-201ENST00000250448 CASKIN1Q8WXD9 1431 aa25.13■■□□□ 1.61
FOXA1-201ENST00000250448 ARID3CA6NKF2 412 aa25.12■■□□□ 1.61
FOXA1-201ENST00000250448 HNRNPUL2Q1KMD3 747 aaKnown RBP25.11■■□□□ 1.61
FOXA1-201ENST00000250448 FYCO1Q9BQS8 1478 aa25.11■■□□□ 1.61
FOXA1-201ENST00000250448 UGGT2Q9NYU1 1516 aa25.11■■□□□ 1.61
FOXA1-201ENST00000250448 NUP160Q12769 1436 aa25.1■■□□□ 1.61
FOXA1-201ENST00000250448 DISP1Q96F81 1524 aa25.09■■□□□ 1.61
FOXA1-201ENST00000250448 JPH4Q96JJ6 628 aa25.07■■□□□ 1.6
FOXA1-201ENST00000250448 CHD1O14646 1710 aa25.06■■□□□ 1.6
FOXA1-201ENST00000250448 LRRC9Q6ZRR7 1453 aa25.05■■□□□ 1.6
FOXA1-201ENST00000250448 KIAA0556O60303 1618 aa25.04■■□□□ 1.6
FOXA1-201ENST00000250448 CFAP43Q8NDM7 1665 aa25.02■■□□□ 1.6
FOXA1-201ENST00000250448 LRRIQ1Q96JM4 1722 aa25.02■■□□□ 1.6
FOXA1-201ENST00000250448 MAP3K1Q13233 1512 aa25.01■■□□□ 1.59
FOXA1-201ENST00000250448 YTHDC1Q96MU7 727 aaKnown RBP24.98■■□□□ 1.59
FOXA1-201ENST00000250448 MIER1Q8N108 512 aa24.97■■□□□ 1.59
FOXA1-201ENST00000250448 PHLDB1Q86UU1 1377 aa24.93■■□□□ 1.58
FOXA1-201ENST00000250448 ITGAEP38570 1179 aa24.92■■□□□ 1.58
FOXA1-201ENST00000250448 MTUS2Q5JR59 1369 aa24.92■■□□□ 1.58
FOXA1-201ENST00000250448 CDK13Q14004 1512 aaKnown RBP24.91■■□□□ 1.58
FOXA1-201ENST00000250448 CARMIL2Q6F5E8 1435 aa24.89■■□□□ 1.58
FOXA1-201ENST00000250448 PRG4Q92954 1404 aaPredicted RBP24.88■■□□□ 1.57
FOXA1-201ENST00000250448 HECW1Q76N89 1606 aa24.87■■□□□ 1.57
FOXA1-201ENST00000250448 PLB1Q6P1J6 1458 aa24.87■■□□□ 1.57
FOXA1-201ENST00000250448 RRBP1Q9P2E9 1410 aaKnown RBP24.86■■□□□ 1.57
FOXA1-201ENST00000250448 CCNB3Q8WWL7 1395 aa24.86■■□□□ 1.57
FOXA1-201ENST00000250448 EPRSP07814 1512 aaKnown RBP24.86■■□□□ 1.57
FOXA1-201ENST00000250448 MAGI3Q5TCQ9 1506 aa24.85■■□□□ 1.57
FOXA1-201ENST00000250448 FAM50AQ14320 339 aaKnown RBP24.82■■□□□ 1.56
FOXA1-201ENST00000250448 NUP153P49790 1475 aaKnown RBP24.81■■□□□ 1.56
FOXA1-201ENST00000250448 RAPGEF6Q8TEU7 1601 aa24.81■■□□□ 1.56
FOXA1-201ENST00000250448 CCDC18Q5T9S5 1454 aa24.79■■□□□ 1.56
FOXA1-201ENST00000250448 PRKCSHP14314 528 aaPredicted RBP24.79■■□□□ 1.56
FOXA1-201ENST00000250448 CLSPNQ9HAW4 1339 aa24.78■■□□□ 1.56
FOXA1-201ENST00000250448 ERCC6L2Q5T890 1561 aa24.77■■□□□ 1.56
FOXA1-201ENST00000250448 NCOA2Q15596 1464 aa24.75■■□□□ 1.55
FOXA1-201ENST00000250448 DHX57Q6P158 1386 aaKnown RBP24.74■■□□□ 1.55
FOXA1-201ENST00000250448 EHBP1L1Q8N3D4 1523 aa24.73■■□□□ 1.55
FOXA1-201ENST00000250448 PTPRGP23470 1445 aa24.72■■□□□ 1.55
FOXA1-201ENST00000250448 SUPT6HQ7KZ85 1726 aaKnown RBP24.69■■□□□ 1.54
FOXA1-201ENST00000250448 SHROOM2Q13796 1616 aa24.69■■□□□ 1.54
FOXA1-201ENST00000250448 CLASP1Q7Z460 1538 aa24.68■■□□□ 1.54
FOXA1-201ENST00000250448 FGD6Q6ZV73 1430 aa24.66■■□□□ 1.54
FOXA1-201ENST00000250448 ABCA8O94911 1581 aa24.64■■□□□ 1.53
FOXA1-201ENST00000250448 MYOM3Q5VTT5 1437 aa24.63■■□□□ 1.53
FOXA1-201ENST00000250448 CDK11AQ9UQ88 783 aaPredicted RBP24.6■■□□□ 1.53
FOXA1-201ENST00000250448 ARHGEF11O15085 1522 aa24.59■■□□□ 1.53
FOXA1-201ENST00000250448 ATP10BO94823 1461 aa24.58■■□□□ 1.53
FOXA1-201ENST00000250448 UACAQ9BZF9 1416 aa24.53■■□□□ 1.52
FOXA1-201ENST00000250448 TROQ12816 1431 aaPredicted RBP24.53■■□□□ 1.52
FOXA1-201ENST00000250448 OSCARQ8IYS5 282 aa24.52■■□□□ 1.52
FOXA1-201ENST00000250448 PLEKHD1A6NEE1 506 aa24.51■■□□□ 1.51
FOXA1-201ENST00000250448 KIF14Q15058 1648 aa24.51■■□□□ 1.51
FOXA1-201ENST00000250448 PTPN23Q9H3S7 1636 aa24.5■■□□□ 1.51
FOXA1-201ENST00000250448 PTPRKQ15262 1439 aa24.49■■□□□ 1.51
FOXA1-201ENST00000250448 ZNF644Q9H582 1327 aaPredicted RBP24.48■■□□□ 1.51
FOXA1-201ENST00000250448 RAB3GAP2Q9H2M9 1393 aa24.47■■□□□ 1.51
FOXA1-201ENST00000250448 CHIC2Q9UKJ5 165 aa24.45■■□□□ 1.51
FOXA1-201ENST00000250448 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.45■■□□□ 1.5
FOXA1-201ENST00000250448 ZNF777Q9ULD5 760 aaPredicted RBP24.42■■□□□ 1.5
FOXA1-201ENST00000250448 SETD5Q9C0A6 1442 aa24.41■■□□□ 1.5
FOXA1-201ENST00000250448 ABCC2Q92887 1545 aa24.41■■□□□ 1.5
FOXA1-201ENST00000250448 CFDP1Q9UEE9 299 aaPredicted RBP24.39■■□□□ 1.49
FOXA1-201ENST00000250448 MIA2Q96PC5 1412 aa24.38■■□□□ 1.49
FOXA1-201ENST00000250448 TCOF1Q13428 1488 aaKnown RBP24.37■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms