RNA–Protein interactions for RNA: ENST00000245479.2

SOX9-201, Transcript of SRY-box 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SOX9, Length 3,935 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9-201ENST00000245479 TDRD9Q8NDG6 1382 aaKnown RBP16.09■□□□□ 0.17
SOX9-201ENST00000245479 ANP32CO43423 234 aa16.09■□□□□ 0.17
SOX9-201ENST00000245479 CARMIL1Q5VZK9 1371 aa16.08■□□□□ 0.17
SOX9-201ENST00000245479 CCNB3Q8WWL7 1395 aa16.07■□□□□ 0.16
SOX9-201ENST00000245479 FAM9BQ8IZU0 186 aa16.04■□□□□ 0.16
SOX9-201ENST00000245479 MTUS2Q5JR59 1369 aa16.04■□□□□ 0.16
SOX9-201ENST00000245479 SALL2Q9Y467 1007 aaPredicted RBP16.04■□□□□ 0.16
SOX9-201ENST00000245479 MYT1LQ9UL68 1186 aa16.02■□□□□ 0.16
SOX9-201ENST00000245479 RAB3GAP2Q9H2M9 1393 aa16.02■□□□□ 0.15
SOX9-201ENST00000245479 HNRNPUQ00839 825 aaKnown RBP eCLIP16.02■□□□□ 0.15
SOX9-201ENST00000245479 TSHZ2Q9NRE2 1034 aa16.02■□□□□ 0.15
SOX9-201ENST00000245479 TONSLQ96HA7 1378 aa16.02■□□□□ 0.15
SOX9-201ENST00000245479 DHX57Q6P158 1386 aaKnown RBP16.01■□□□□ 0.15
SOX9-201ENST00000245479 FHOD3Q2V2M9 1422 aa15.99■□□□□ 0.15
SOX9-201ENST00000245479 SENP3Q9H4L4 574 aaPredicted RBP15.99■□□□□ 0.15
SOX9-201ENST00000245479 BICRAQ9NZM4 1560 aa15.96■□□□□ 0.15
SOX9-201ENST00000245479 KDM2AQ9Y2K7 1162 aa15.96■□□□□ 0.15
SOX9-201ENST00000245479 ARAP1Q96P48 1450 aa15.96■□□□□ 0.15
SOX9-201ENST00000245479 KIF21BO75037 1637 aa15.95■□□□□ 0.14
SOX9-201ENST00000245479 RAD54L2Q9Y4B4 1467 aa15.93■□□□□ 0.14
SOX9-201ENST00000245479 NBR1Q14596 966 aa15.93■□□□□ 0.14
SOX9-201ENST00000245479 IGF1RP08069 1367 aa15.92■□□□□ 0.14
SOX9-201ENST00000245479 DAXXQ9UER7 740 aaPredicted RBP15.91■□□□□ 0.14
SOX9-201ENST00000245479 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.88■□□□□ 0.137e-9■□□□□ 10.7
SOX9-201ENST00000245479 RBM19Q9Y4C8 960 aaKnown RBP15.88■□□□□ 0.13
SOX9-201ENST00000245479 UNC13AQ9UPW8 1703 aa15.87■□□□□ 0.13
SOX9-201ENST00000245479 CADPSQ9ULU8 1353 aa15.86■□□□□ 0.13
SOX9-201ENST00000245479 PHLDB1Q86UU1 1377 aa15.86■□□□□ 0.13
SOX9-201ENST00000245479 NESP48681 1621 aa15.86■□□□□ 0.13
SOX9-201ENST00000245479 SLC4A1APQ9BWU0 796 aaKnown RBP15.84■□□□□ 0.13
SOX9-201ENST00000245479 EIF4G1Q04637 1599 aaKnown RBP15.84■□□□□ 0.13
SOX9-201ENST00000245479 ANP32AP39687 249 aaKnown RBP15.83■□□□□ 0.12
SOX9-201ENST00000245479 RGL3Q3MIN7 710 aa15.82■□□□□ 0.12
SOX9-201ENST00000245479 CHMP7Q8WUX9 453 aaPredicted RBP15.81■□□□□ 0.12
SOX9-201ENST00000245479 EIF5BO60841 1220 aaKnown RBP15.81■□□□□ 0.12
SOX9-201ENST00000245479 SETD5Q9C0A6 1442 aa15.81■□□□□ 0.12
SOX9-201ENST00000245479 CUX1P39880 1505 aa15.8■□□□□ 0.12
SOX9-201ENST00000245479 MRS2Q9HD23 443 aa15.79■□□□□ 0.12
SOX9-201ENST00000245479 ARHGAP35Q9NRY4 1499 aa15.78■□□□□ 0.12
SOX9-201ENST00000245479 FGD5Q6ZNL6 1462 aa15.78■□□□□ 0.12
SOX9-201ENST00000245479 PPP1R15AO75807 674 aaPredicted RBP15.76■□□□□ 0.11
SOX9-201ENST00000245479 ZNF644Q9H582 1327 aaPredicted RBP15.76■□□□□ 0.11
SOX9-201ENST00000245479 NPM2Q86SE8 214 aaKnown RBP15.75■□□□□ 0.11
SOX9-201ENST00000245479 HSPA5P11021 654 aaKnown RBP15.74■□□□□ 0.11
SOX9-201ENST00000245479 PRXQ9BXM0 1461 aa15.72■□□□□ 0.11
SOX9-201ENST00000245479 FANCD2Q9BXW9 1451 aa15.71■□□□□ 0.11
SOX9-201ENST00000245479 EIF4G2P78344 907 aaKnown RBP eCLIP15.71■□□□□ 0.11
SOX9-201ENST00000245479 DEKP35659 375 aaKnown RBP15.7■□□□□ 0.1
SOX9-201ENST00000245479 CFDP1Q9UEE9 299 aaPredicted RBP15.7■□□□□ 0.1
SOX9-201ENST00000245479 L3MBTL2Q969R5 705 aa15.69■□□□□ 0.1
SOX9-201ENST00000245479 ZBTB47Q9UFB7 747 aaPredicted RBP15.68■□□□□ 0.1
SOX9-201ENST00000245479 NCAPD3P42695 1498 aa15.68■□□□□ 0.1
SOX9-201ENST00000245479 B4GALNT3Q6L9W6 998 aa15.66■□□□□ 0.1
SOX9-201ENST00000245479 FHAD1B1AJZ9 1412 aa15.65■□□□□ 0.1
SOX9-201ENST00000245479 MPHOSPH9Q99550 1183 aa15.64■□□□□ 0.09
SOX9-201ENST00000245479 RTN4Q9NQC3 1192 aaKnown RBP15.64■□□□□ 0.09
SOX9-201ENST00000245479 PDS5BQ9NTI5 1447 aa15.64■□□□□ 0.09
SOX9-201ENST00000245479 CFTRP13569 1480 aa15.63■□□□□ 0.09
SOX9-201ENST00000245479 CCDC184Q52MB2 194 aa15.63■□□□□ 0.09
SOX9-201ENST00000245479 TOP2BQ02880 1626 aa15.63■□□□□ 0.09
SOX9-201ENST00000245479 AQRO60306 1485 aaKnown RBP eCLIP15.62■□□□□ 0.093e-8■■■■□ 26.6
SOX9-201ENST00000245479 CCDC136Q96JN2 1154 aa15.6■□□□□ 0.09
SOX9-201ENST00000245479 TMC1Q8TDI8 760 aa15.58■□□□□ 0.08
SOX9-201ENST00000245479 TSPY4P0CV99 314 aa15.57■□□□□ 0.08
SOX9-201ENST00000245479 TSPY10P0CW01 314 aa15.57■□□□□ 0.08
SOX9-201ENST00000245479 LRRC9Q6ZRR7 1453 aa15.57■□□□□ 0.08
SOX9-201ENST00000245479 CHGAP10645 457 aaKnown RBP15.57■□□□□ 0.08
SOX9-201ENST00000245479 PKD2Q13563 968 aa15.57■□□□□ 0.08
SOX9-201ENST00000245479 NOP58Q9Y2X3 529 aaKnown RBP15.56■□□□□ 0.08
SOX9-201ENST00000245479 DCAF11Q8TEB1 546 aa15.55■□□□□ 0.08
SOX9-201ENST00000245479 HNRNPMP52272 730 aaKnown RBP eCLIP15.55■□□□□ 0.08
SOX9-201ENST00000245479 PLEKHD1A6NEE1 506 aa15.54■□□□□ 0.08
SOX9-201ENST00000245479 RRBP1Q9P2E9 1410 aaKnown RBP15.54■□□□□ 0.08
SOX9-201ENST00000245479 WDR97A6NE52 1622 aa15.53■□□□□ 0.08
SOX9-201ENST00000245479 CARD11Q9BXL7 1154 aa15.53■□□□□ 0.08
SOX9-201ENST00000245479 PPP4R2Q9NY27 417 aa15.51■□□□□ 0.07
SOX9-201ENST00000245479 CC2D1BQ5T0F9 858 aaKnown RBP15.5■□□□□ 0.07
SOX9-201ENST00000245479 C11orf95C9JLR9 678 aaPredicted RBP15.5■□□□□ 0.07
SOX9-201ENST00000245479 POLA1P09884 1462 aaPredicted RBP15.49■□□□□ 0.07
SOX9-201ENST00000245479 CC2D2AQ9P2K1 1620 aa15.48■□□□□ 0.07
SOX9-201ENST00000245479 CCDC18Q5T9S5 1454 aa15.47■□□□□ 0.07
SOX9-201ENST00000245479 WASHC2AQ641Q2 1341 aa15.47■□□□□ 0.07
SOX9-201ENST00000245479 FMN1Q68DA7 1419 aa15.47■□□□□ 0.07
SOX9-201ENST00000245479 NBPF8Q3BBV2 869 aa15.47■□□□□ 0.07
SOX9-201ENST00000245479 FGD6Q6ZV73 1430 aa15.46■□□□□ 0.07
SOX9-201ENST00000245479 GAPVD1Q14C86 1478 aa15.45■□□□□ 0.06
SOX9-201ENST00000245479 ERCC6Q03468 1493 aa15.44■□□□□ 0.06
SOX9-201ENST00000245479 ERICH3Q5RHP9 1530 aa15.44■□□□□ 0.06
SOX9-201ENST00000245479 PRKCSHP14314 528 aaPredicted RBP15.43■□□□□ 0.06
SOX9-201ENST00000245479 PLPPR3Q6T4P5 718 aa15.42■□□□□ 0.06
SOX9-201ENST00000245479 CCER2I3L3R5 266 aa15.42■□□□□ 0.06
SOX9-201ENST00000245479 JPH4Q96JJ6 628 aa15.42■□□□□ 0.06
SOX9-201ENST00000245479 LAS1LQ9Y4W2 734 aaKnown RBP15.42■□□□□ 0.06
SOX9-201ENST00000245479 PTPRKQ15262 1439 aa15.42■□□□□ 0.06
SOX9-201ENST00000245479 PEG3Q9GZU2 1588 aa15.42■□□□□ 0.06
SOX9-201ENST00000245479 TNNT2P45379 298 aaPredicted RBP15.41■□□□□ 0.06
SOX9-201ENST00000245479 TOPBP1Q92547 1522 aa15.41■□□□□ 0.06
SOX9-201ENST00000245479 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.41■□□□□ 0.06
SOX9-201ENST00000245479 NEFMP07197 916 aa15.39■□□□□ 0.05
SOX9-201ENST00000245479 NUP155O75694 1391 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms