RNA–Protein interactions for RNA: ENST00000204961.4

EFNB1-201, Transcript of ephrin B1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene EFNB1, Length 3,314 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EFNB1-201ENST00000204961 PEG3Q9GZU2 1588 aa21.53■■□□□ 1.04
EFNB1-201ENST00000204961 IRX6P78412 446 aaPredicted RBP21.52■■□□□ 1.03
EFNB1-201ENST00000204961 FHOD3Q2V2M9 1422 aa21.51■■□□□ 1.03
EFNB1-201ENST00000204961 PHLDB1Q86UU1 1377 aa21.5■■□□□ 1.03
EFNB1-201ENST00000204961 RRP7BPQ9NSQ0 103 aa21.5■■□□□ 1.03
EFNB1-201ENST00000204961 POLR3GLQ9BT43 218 aa21.46■■□□□ 1.03
EFNB1-201ENST00000204961 RAD54L2Q9Y4B4 1467 aa21.46■■□□□ 1.03
EFNB1-201ENST00000204961 FOXD1Q16676 465 aa21.43■■□□□ 1.02
EFNB1-201ENST00000204961 TDRD9Q8NDG6 1382 aaKnown RBP21.41■■□□□ 1.02
EFNB1-201ENST00000204961 FGD5Q6ZNL6 1462 aa21.39■■□□□ 1.01
EFNB1-201ENST00000204961 NCAPD3P42695 1498 aa21.38■■□□□ 1.01
EFNB1-201ENST00000204961 SETD5Q9C0A6 1442 aa21.37■■□□□ 1.01
EFNB1-201ENST00000204961 NESP48681 1621 aa21.36■■□□□ 1.01
EFNB1-201ENST00000204961 CADPSQ9ULU8 1353 aa21.36■■□□□ 1.01
EFNB1-201ENST00000204961 ANP32CO43423 234 aa21.35■■□□□ 1.01
EFNB1-201ENST00000204961 RRBP1Q9P2E9 1410 aaKnown RBP21.35■■□□□ 1.01
EFNB1-201ENST00000204961 CFTRP13569 1480 aa21.35■■□□□ 1.01
EFNB1-201ENST00000204961 CLSPNQ9HAW4 1339 aa21.35■■□□□ 1.01
EFNB1-201ENST00000204961 MTUS2Q5JR59 1369 aa21.32■■□□□ 1
EFNB1-201ENST00000204961 NEFLP07196 543 aa21.31■■□□□ 1
EFNB1-201ENST00000204961 ERICH3Q5RHP9 1530 aa21.31■■□□□ 1
EFNB1-201ENST00000204961 TONSLQ96HA7 1378 aa21.31■■□□□ 1
EFNB1-201ENST00000204961 ZNF326Q5BKZ1 582 aaKnown RBP21.3■■□□□ 1
EFNB1-201ENST00000204961 TSHZ2Q9NRE2 1034 aa21.3■■□□□ 1
EFNB1-201ENST00000204961 WDR97A6NE52 1622 aa21.28■■□□□ 1
EFNB1-201ENST00000204961 BIVM-ERCC5R4GMW8 1640 aa21.27■■□□□ 1
EFNB1-201ENST00000204961 HNRNPUQ00839 825 aaKnown RBP eCLIP21.26■□□□□ 0.99
EFNB1-201ENST00000204961 PPP1R15AO75807 674 aaPredicted RBP21.26■□□□□ 0.99
EFNB1-201ENST00000204961 LRRC9Q6ZRR7 1453 aa21.23■□□□□ 0.99
EFNB1-201ENST00000204961 FBLN2P98095 1184 aa21.2■□□□□ 0.98
EFNB1-201ENST00000204961 FAM9BQ8IZU0 186 aa21.2■□□□□ 0.98
EFNB1-201ENST00000204961 FANCD2Q9BXW9 1451 aa21.19■□□□□ 0.98
EFNB1-201ENST00000204961 MAPKBP1O60336 1514 aa21.19■□□□□ 0.98
EFNB1-201ENST00000204961 ZNF777Q9ULD5 760 aaPredicted RBP21.19■□□□□ 0.98
EFNB1-201ENST00000204961 TIAM1Q13009 1591 aa21.14■□□□□ 0.98
EFNB1-201ENST00000204961 HMGXB3Q12766 1538 aa21.12■□□□□ 0.97
EFNB1-201ENST00000204961 FHAD1B1AJZ9 1412 aa21.11■□□□□ 0.97
EFNB1-201ENST00000204961 CCDC184Q52MB2 194 aa21.09■□□□□ 0.97
EFNB1-201ENST00000204961 PCF11O94913 1555 aaKnown RBP21.09■□□□□ 0.97
EFNB1-201ENST00000204961 HSPA5P11021 654 aaKnown RBP21.07■□□□□ 0.96
EFNB1-201ENST00000204961 PTPRKQ15262 1439 aa21.06■□□□□ 0.96
EFNB1-201ENST00000204961 ANP32EQ9BTT0 268 aa21.05■□□□□ 0.96
EFNB1-201ENST00000204961 ZNF644Q9H582 1327 aaPredicted RBP21.04■□□□□ 0.96
EFNB1-201ENST00000204961 POLA1P09884 1462 aaPredicted RBP21.03■□□□□ 0.96
EFNB1-201ENST00000204961 CC2D2AQ9P2K1 1620 aa21.03■□□□□ 0.96
EFNB1-201ENST00000204961 L3MBTL2Q969R5 705 aa20.99■□□□□ 0.95
EFNB1-201ENST00000204961 BCL11AQ9H165 835 aa20.99■□□□□ 0.95
EFNB1-201ENST00000204961 SALL2Q9Y467 1007 aaPredicted RBP20.99■□□□□ 0.95
EFNB1-201ENST00000204961 FGD6Q6ZV73 1430 aa20.98■□□□□ 0.95
EFNB1-201ENST00000204961 CCDC18Q5T9S5 1454 aa20.98■□□□□ 0.95
EFNB1-201ENST00000204961 AQRO60306 1485 aaKnown RBP eCLIP20.98■□□□□ 0.95
EFNB1-201ENST00000204961 C11orf95C9JLR9 678 aaPredicted RBP20.96■□□□□ 0.95
EFNB1-201ENST00000204961 RBM19Q9Y4C8 960 aaKnown RBP20.95■□□□□ 0.94
EFNB1-201ENST00000204961 TOPBP1Q92547 1522 aa20.94■□□□□ 0.94
EFNB1-201ENST00000204961 MRS2Q9HD23 443 aa20.94■□□□□ 0.94
EFNB1-201ENST00000204961 SLC4A1APQ9BWU0 796 aaKnown RBP20.94■□□□□ 0.94
EFNB1-201ENST00000204961 KDM2AQ9Y2K7 1162 aa20.93■□□□□ 0.94
EFNB1-201ENST00000204961 MPHOSPH9Q99550 1183 aa20.93■□□□□ 0.94
EFNB1-201ENST00000204961 WASHC2AQ641Q2 1341 aa20.92■□□□□ 0.94
EFNB1-201ENST00000204961 EIF4G2P78344 907 aaKnown RBP eCLIP20.91■□□□□ 0.94
EFNB1-201ENST00000204961 B4GALNT3Q6L9W6 998 aa20.89■□□□□ 0.93
EFNB1-201ENST00000204961 CASKIN1Q8WXD9 1431 aa20.87■□□□□ 0.93
EFNB1-201ENST00000204961 NCOA2Q15596 1464 aa20.87■□□□□ 0.93
EFNB1-201ENST00000204961 FMN1Q68DA7 1419 aa20.86■□□□□ 0.93
EFNB1-201ENST00000204961 PDS5BQ9NTI5 1447 aa20.86■□□□□ 0.93
EFNB1-201ENST00000204961 NBPF8Q3BBV2 869 aa20.84■□□□□ 0.93
EFNB1-201ENST00000204961 GAPVD1Q14C86 1478 aa20.83■□□□□ 0.92
EFNB1-201ENST00000204961 CCER2I3L3R5 266 aa20.83■□□□□ 0.92
EFNB1-201ENST00000204961 NAIPQ13075 1403 aa20.82■□□□□ 0.92
EFNB1-201ENST00000204961 URB2Q14146 1524 aaKnown RBP20.8■□□□□ 0.92
EFNB1-201ENST00000204961 ERICH6Q7L0X2 663 aa20.79■□□□□ 0.92
EFNB1-201ENST00000204961 FYCO1Q9BQS8 1478 aa20.78■□□□□ 0.92
EFNB1-201ENST00000204961 TIMELESSQ9UNS1 1208 aa20.78■□□□□ 0.92
EFNB1-201ENST00000204961 MYOM3Q5VTT5 1437 aa20.77■□□□□ 0.92
EFNB1-201ENST00000204961 CDK13Q14004 1512 aaKnown RBP20.77■□□□□ 0.92
EFNB1-201ENST00000204961 UACAQ9BZF9 1416 aa20.76■□□□□ 0.91
EFNB1-201ENST00000204961 ABCA10Q8WWZ4 1543 aa20.76■□□□□ 0.91
EFNB1-201ENST00000204961 CDK11AQ9UQ88 783 aaPredicted RBP20.75■□□□□ 0.91
EFNB1-201ENST00000204961 CFDP1Q9UEE9 299 aaPredicted RBP20.73■□□□□ 0.91
EFNB1-201ENST00000204961 RGL3Q3MIN7 710 aa20.73■□□□□ 0.91
EFNB1-201ENST00000204961 DNMBPQ6XZF7 1577 aa20.72■□□□□ 0.91
EFNB1-201ENST00000204961 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.71■□□□□ 0.91
EFNB1-201ENST00000204961 HFM1A2PYH4 1435 aa20.71■□□□□ 0.91
EFNB1-201ENST00000204961 CHMP7Q8WUX9 453 aaPredicted RBP20.7■□□□□ 0.9
EFNB1-201ENST00000204961 PRKRIP1Q9H875 184 aaPredicted RBP20.69■□□□□ 0.9
EFNB1-201ENST00000204961 PKD2Q13563 968 aa20.68■□□□□ 0.9
EFNB1-201ENST00000204961 SNAPC4Q5SXM2 1469 aa20.67■□□□□ 0.9
EFNB1-201ENST00000204961 MAP3K1Q13233 1512 aa20.66■□□□□ 0.9
EFNB1-201ENST00000204961 MSH5O43196 834 aa20.65■□□□□ 0.9
EFNB1-201ENST00000204961 MAGI3Q5TCQ9 1506 aa20.65■□□□□ 0.9
EFNB1-201ENST00000204961 PTPN23Q9H3S7 1636 aa20.64■□□□□ 0.9
EFNB1-201ENST00000204961 KIF7Q2M1P5 1343 aa20.63■□□□□ 0.89
EFNB1-201ENST00000204961 KDM6BO15054 1643 aa20.62■□□□□ 0.89
EFNB1-201ENST00000204961 CFAP43Q8NDM7 1665 aa20.62■□□□□ 0.89
EFNB1-201ENST00000204961 NBR1Q14596 966 aa20.59■□□□□ 0.89
EFNB1-201ENST00000204961 HNRNPMP52272 730 aaKnown RBP eCLIP20.58■□□□□ 0.88
EFNB1-201ENST00000204961 DCAF11Q8TEB1 546 aa20.58■□□□□ 0.88
EFNB1-201ENST00000204961 EFCAB5A4FU69 1503 aa20.58■□□□□ 0.88
EFNB1-201ENST00000204961 TMC1Q8TDI8 760 aa20.57■□□□□ 0.88
EFNB1-201ENST00000204961 CARD11Q9BXL7 1154 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms