RNA–Protein interactions for RNA: ENST00000201963.3

DNMT3B-201, Transcript of DNA methyltransferase 3 beta, humanhuman

TSL 1 (best) BASIC

Gene DNMT3B, Length 4,255 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3B-201ENST00000201963 AQRO60306 1485 aaKnown RBP eCLIP16.12■□□□□ 0.178e-7■■■■□ 22.3
DNMT3B-201ENST00000201963 HMGXB3Q12766 1538 aa16.1■□□□□ 0.17
DNMT3B-201ENST00000201963 DDX10Q13206 875 aaKnown RBP16.08■□□□□ 0.16
DNMT3B-201ENST00000201963 TRIM52Q96A61 297 aa16.06■□□□□ 0.16
DNMT3B-201ENST00000201963 CFTRP13569 1480 aa16.05■□□□□ 0.16
DNMT3B-201ENST00000201963 FGD5Q6ZNL6 1462 aa16.04■□□□□ 0.16
DNMT3B-201ENST00000201963 MRC2Q9UBG0 1479 aa16.01■□□□□ 0.15
DNMT3B-201ENST00000201963 JPH4Q96JJ6 628 aa16.01■□□□□ 0.15
DNMT3B-201ENST00000201963 SUPT16HQ9Y5B9 1047 aaKnown RBP16■□□□□ 0.15
DNMT3B-201ENST00000201963 PLEKHD1A6NEE1 506 aa15.99■□□□□ 0.15
DNMT3B-201ENST00000201963 BCL11AQ9H165 835 aa15.97■□□□□ 0.15
DNMT3B-201ENST00000201963 ESF1Q9H501 851 aaKnown RBP15.97■□□□□ 0.15
DNMT3B-201ENST00000201963 HNRNPUQ00839 825 aaKnown RBP eCLIP15.96■□□□□ 0.14
DNMT3B-201ENST00000201963 IRX6P78412 446 aaPredicted RBP15.92■□□□□ 0.14
DNMT3B-201ENST00000201963 NBR1Q14596 966 aa15.92■□□□□ 0.14
DNMT3B-201ENST00000201963 GAPVD1Q14C86 1478 aa15.92■□□□□ 0.14
DNMT3B-201ENST00000201963 CLIP1P30622 1438 aa15.92■□□□□ 0.14
DNMT3B-201ENST00000201963 CHIC2Q9UKJ5 165 aa15.92■□□□□ 0.14
DNMT3B-201ENST00000201963 ARID4BQ4LE39 1312 aaPredicted RBP15.92■□□□□ 0.14
DNMT3B-201ENST00000201963 ANP32AP39687 249 aaKnown RBP15.91■□□□□ 0.14
DNMT3B-201ENST00000201963 MTUS2Q5JR59 1369 aa15.9■□□□□ 0.14
DNMT3B-201ENST00000201963 RUSC2Q8N2Y8 1516 aa15.9■□□□□ 0.14
DNMT3B-201ENST00000201963 TOPBP1Q92547 1522 aa15.89■□□□□ 0.13
DNMT3B-201ENST00000201963 HIRIP3Q9BW71 556 aaPredicted RBP15.89■□□□□ 0.13
DNMT3B-201ENST00000201963 NPM2Q86SE8 214 aaKnown RBP15.87■□□□□ 0.13
DNMT3B-201ENST00000201963 EEA1Q15075 1411 aa15.86■□□□□ 0.13
DNMT3B-201ENST00000201963 GOLGA3Q08378 1498 aa15.86■□□□□ 0.13
DNMT3B-201ENST00000201963 LAMC3Q9Y6N6 1575 aa15.86■□□□□ 0.13
DNMT3B-201ENST00000201963 SENP3Q9H4L4 574 aaPredicted RBP15.85■□□□□ 0.13
DNMT3B-201ENST00000201963 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.85■□□□□ 0.13
DNMT3B-201ENST00000201963 CEP162Q5TB80 1403 aa15.85■□□□□ 0.13
DNMT3B-201ENST00000201963 POLA1P09884 1462 aaPredicted RBP15.84■□□□□ 0.13
DNMT3B-201ENST00000201963 CARMIL2Q6F5E8 1435 aa15.84■□□□□ 0.13
DNMT3B-201ENST00000201963 EIF5BO60841 1220 aaKnown RBP15.83■□□□□ 0.13
DNMT3B-201ENST00000201963 MLECQ14165 292 aa15.82■□□□□ 0.12
DNMT3B-201ENST00000201963 FAM9BQ8IZU0 186 aa15.79■□□□□ 0.12
DNMT3B-201ENST00000201963 TSHZ2Q9NRE2 1034 aa15.79■□□□□ 0.12
DNMT3B-201ENST00000201963 IGF1RP08069 1367 aa15.79■□□□□ 0.12
DNMT3B-201ENST00000201963 IFT140Q96RY7 1462 aa15.79■□□□□ 0.12
DNMT3B-201ENST00000201963 CHGAP10645 457 aaKnown RBP15.78■□□□□ 0.12
DNMT3B-201ENST00000201963 ZNF326Q5BKZ1 582 aaKnown RBP15.78■□□□□ 0.12
DNMT3B-201ENST00000201963 ZNF608Q9ULD9 1512 aaPredicted RBP15.78■□□□□ 0.12
DNMT3B-201ENST00000201963 TSPY4P0CV99 314 aa15.77■□□□□ 0.12
DNMT3B-201ENST00000201963 TSPY10P0CW01 314 aa15.77■□□□□ 0.12
DNMT3B-201ENST00000201963 URB2Q14146 1524 aaKnown RBP15.77■□□□□ 0.11
DNMT3B-201ENST00000201963 CFDP1Q9UEE9 299 aaPredicted RBP15.76■□□□□ 0.11
DNMT3B-201ENST00000201963 GRIN2BQ13224 1484 aa15.75■□□□□ 0.11
DNMT3B-201ENST00000201963 CUX1P39880 1505 aa15.75■□□□□ 0.11
DNMT3B-201ENST00000201963 PEG3Q9GZU2 1588 aa15.75■□□□□ 0.11
DNMT3B-201ENST00000201963 RAPGEF2Q9Y4G8 1499 aa15.74■□□□□ 0.11
DNMT3B-201ENST00000201963 PTPRGP23470 1445 aa15.74■□□□□ 0.11
DNMT3B-201ENST00000201963 SNAPC4Q5SXM2 1469 aa15.73■□□□□ 0.11
DNMT3B-201ENST00000201963 TONSLQ96HA7 1378 aa15.73■□□□□ 0.11
DNMT3B-201ENST00000201963 ZBTB47Q9UFB7 747 aaPredicted RBP15.72■□□□□ 0.11
DNMT3B-201ENST00000201963 STAG3Q9UJ98 1225 aa15.72■□□□□ 0.11
DNMT3B-201ENST00000201963 RBM19Q9Y4C8 960 aaKnown RBP15.72■□□□□ 0.11
DNMT3B-201ENST00000201963 FAM69CQ0P6D2 419 aa15.72■□□□□ 0.11
DNMT3B-201ENST00000201963 FHOD3Q2V2M9 1422 aa15.71■□□□□ 0.1
DNMT3B-201ENST00000201963 CCDC136Q96JN2 1154 aa15.7■□□□□ 0.1
DNMT3B-201ENST00000201963 SYNJ1O43426 1573 aa15.7■□□□□ 0.1
DNMT3B-201ENST00000201963 DNMBPQ6XZF7 1577 aa15.67■□□□□ 0.1
DNMT3B-201ENST00000201963 RRP7BPQ9NSQ0 103 aa15.67■□□□□ 0.1
DNMT3B-201ENST00000201963 TNIKQ9UKE5 1360 aa15.66■□□□□ 0.1
DNMT3B-201ENST00000201963 FHAD1B1AJZ9 1412 aa15.65■□□□□ 0.1
DNMT3B-201ENST00000201963 SLC4A1APQ9BWU0 796 aaKnown RBP15.63■□□□□ 0.09
DNMT3B-201ENST00000201963 MRS2Q9HD23 443 aa15.63■□□□□ 0.09
DNMT3B-201ENST00000201963 PRG4Q92954 1404 aaPredicted RBP15.63■□□□□ 0.09
DNMT3B-201ENST00000201963 SALL2Q9Y467 1007 aaPredicted RBP15.6■□□□□ 0.09
DNMT3B-201ENST00000201963 RTN4Q9NQC3 1192 aaKnown RBP15.57■□□□□ 0.08
DNMT3B-201ENST00000201963 SIN3AQ96ST3 1273 aa15.56■□□□□ 0.08
DNMT3B-201ENST00000201963 GGT6Q6P531 493 aa15.56■□□□□ 0.08
DNMT3B-201ENST00000201963 CCNB3Q8WWL7 1395 aa15.56■□□□□ 0.08
DNMT3B-201ENST00000201963 DEKP35659 375 aaKnown RBP15.55■□□□□ 0.08
DNMT3B-201ENST00000201963 KIF21AQ7Z4S6 1674 aa15.55■□□□□ 0.08
DNMT3B-201ENST00000201963 SENP3-EIF4A1A0A087X0R7 540 aa15.54■□□□□ 0.08
DNMT3B-201ENST00000201963 KANK4Q5T7N3 995 aaPredicted RBP15.53■□□□□ 0.08
DNMT3B-201ENST00000201963 B4GALNT3Q6L9W6 998 aa15.52■□□□□ 0.08
DNMT3B-201ENST00000201963 EFCAB2Q5VUJ9 269 aa15.52■□□□□ 0.08
DNMT3B-201ENST00000201963 PPP4R2Q9NY27 417 aa15.5■□□□□ 0.07
DNMT3B-201ENST00000201963 TOP2BQ02880 1626 aa15.5■□□□□ 0.07
DNMT3B-201ENST00000201963 NOP58Q9Y2X3 529 aaKnown RBP15.49■□□□□ 0.07
DNMT3B-201ENST00000201963 HNRNPMP52272 730 aaKnown RBP eCLIP15.49■□□□□ 0.079e-7■■□□□ 12.9
DNMT3B-201ENST00000201963 TMC1Q8TDI8 760 aa15.48■□□□□ 0.07
DNMT3B-201ENST00000201963 ABCA10Q8WWZ4 1543 aa15.47■□□□□ 0.07
DNMT3B-201ENST00000201963 FMN1Q68DA7 1419 aa15.47■□□□□ 0.07
DNMT3B-201ENST00000201963 AEBP2Q6ZN18 517 aaPredicted RBP15.47■□□□□ 0.07
DNMT3B-201ENST00000201963 SYNJ2O15056 1496 aa15.46■□□□□ 0.06
DNMT3B-201ENST00000201963 EIF4G2P78344 907 aaKnown RBP eCLIP15.44■□□□□ 0.06
DNMT3B-201ENST00000201963 ARXQ96QS3 562 aa15.44■□□□□ 0.06
DNMT3B-201ENST00000201963 LAS1LQ9Y4W2 734 aaKnown RBP15.43■□□□□ 0.06
DNMT3B-201ENST00000201963 PLEKHG5O94827 1062 aa15.42■□□□□ 0.06
DNMT3B-201ENST00000201963 PPP1R15AO75807 674 aaPredicted RBP15.41■□□□□ 0.06
DNMT3B-201ENST00000201963 CANXP27824 592 aaKnown RBP15.41■□□□□ 0.06
DNMT3B-201ENST00000201963 KDM2AQ9Y2K7 1162 aa15.4■□□□□ 0.06
DNMT3B-201ENST00000201963 GRIN2AQ12879 1464 aa15.4■□□□□ 0.06
DNMT3B-201ENST00000201963 RGL3Q3MIN7 710 aa15.4■□□□□ 0.06
DNMT3B-201ENST00000201963 MAGI1Q96QZ7 1491 aaPredicted RBP15.39■□□□□ 0.05
DNMT3B-201ENST00000201963 CCER2I3L3R5 266 aa15.38■□□□□ 0.05
DNMT3B-201ENST00000201963 NEFMP07197 916 aa15.38■□□□□ 0.05
DNMT3B-201ENST00000201963 KIF3BO15066 747 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms