RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Mapk8ip2Q9ERE9 830 aa21.69■■□□□ 1.06
Ccdc88a-201ENSMUST00000040182 Mrs2Q5NCE8 434 aa21.67■■□□□ 1.06
Ccdc88a-201ENSMUST00000040182 Chmp4bQ9D8B3 224 aaKnown RBP21.67■■□□□ 1.06
Ccdc88a-201ENSMUST00000040182 CanxP35564 591 aaKnown RBP21.66■■□□□ 1.06
Ccdc88a-201ENSMUST00000040182 BlmO88700 1416 aa21.64■■□□□ 1.05
Ccdc88a-201ENSMUST00000040182 PtmaP26350 111 aa21.64■■□□□ 1.05
Ccdc88a-201ENSMUST00000040182 Ccdc27Q3V036 639 aa21.63■■□□□ 1.05
Ccdc88a-201ENSMUST00000040182 Trim30dE9PWL0 497 aa21.63■■□□□ 1.05
Ccdc88a-201ENSMUST00000040182 Ifnlr1Q8CGK5 535 aa21.62■■□□□ 1.05
Ccdc88a-201ENSMUST00000040182 Znf326O88291 580 aa21.61■■□□□ 1.05
Ccdc88a-201ENSMUST00000040182 Rad21Q61550 635 aaKnown RBP21.61■■□□□ 1.05
Ccdc88a-201ENSMUST00000040182 Ppm1gQ61074 542 aa21.57■■□□□ 1.04
Ccdc88a-201ENSMUST00000040182 Map7O88735 730 aa21.56■■□□□ 1.04
Ccdc88a-201ENSMUST00000040182 Zfp777B9EKF4 885 aa21.55■■□□□ 1.04
Ccdc88a-201ENSMUST00000040182 Gm38655A0A286YDK6 273 aa21.54■■□□□ 1.04
Ccdc88a-201ENSMUST00000040182 Cwc22Q8C5N3 908 aaKnown RBP21.48■■□□□ 1.03
Ccdc88a-201ENSMUST00000040182 Mbd3Q9Z2D8 285 aaKnown RBP21.47■■□□□ 1.03
Ccdc88a-201ENSMUST00000040182 PnnO35691 725 aaKnown RBP21.46■■□□□ 1.03
Ccdc88a-201ENSMUST00000040182 Setd5Q5XJV7 1441 aa21.44■■□□□ 1.02
Ccdc88a-201ENSMUST00000040182 Vsig10D3YX43 558 aa21.44■■□□□ 1.02
Ccdc88a-201ENSMUST00000040182 Baz1aO88379 1555 aa21.43■■□□□ 1.02
Ccdc88a-201ENSMUST00000040182 Ofd1Q80Z25 1017 aa21.42■■□□□ 1.02
Ccdc88a-201ENSMUST00000040182 PtmsQ9D0J8 101 aaKnown RBP21.41■■□□□ 1.02
Ccdc88a-201ENSMUST00000040182 Rangap1P46061 589 aaKnown RBP21.41■■□□□ 1.02
Ccdc88a-201ENSMUST00000040182 Ccdc18Q640L5 1455 aa21.4■■□□□ 1.02
Ccdc88a-201ENSMUST00000040182 IqubQ8CDK3 788 aa21.4■■□□□ 1.02
Ccdc88a-201ENSMUST00000040182 Calcoco2A2A6M5 331 aa21.37■■□□□ 1.01
Ccdc88a-201ENSMUST00000040182 Eea1Q8BL66 1411 aa21.37■■□□□ 1.01
Ccdc88a-201ENSMUST00000040182 Plcb2A3KGF7 1181 aa21.37■■□□□ 1.01
Ccdc88a-201ENSMUST00000040182 Mia2Q91ZV0 1396 aa21.36■■□□□ 1.01
Ccdc88a-201ENSMUST00000040182 Casc1Q6TDU8 730 aa21.36■■□□□ 1.01
Ccdc88a-201ENSMUST00000040182 Gm973E9Q295 1059 aa21.34■■□□□ 1.01
Ccdc88a-201ENSMUST00000040182 Chic2Q9D9G3 165 aa21.34■■□□□ 1.01
Ccdc88a-201ENSMUST00000040182 Safb2Q80YR5 991 aaKnown RBP21.34■■□□□ 1.01
Ccdc88a-201ENSMUST00000040182 Fkbp15Q6P9Q6 1216 aaKnown RBP21.32■■□□□ 1
Ccdc88a-201ENSMUST00000040182 Mapk8ip3Q9ESN9 1337 aa21.31■■□□□ 1
Ccdc88a-201ENSMUST00000040182 Tnnt2P50752 301 aa21.3■■□□□ 1
Ccdc88a-201ENSMUST00000040182 KnstrnQ9D9Z1 312 aaKnown RBP21.3■■□□□ 1
Ccdc88a-201ENSMUST00000040182 Iqcf3Q9D498 203 aa21.3■■□□□ 1
Ccdc88a-201ENSMUST00000040182 NacadQ5SWP3 1504 aa21.28■■□□□ 1
Ccdc88a-201ENSMUST00000040182 MccE9PWI3 1003 aa21.27■■□□□ 1
Ccdc88a-201ENSMUST00000040182 NudcO35685 332 aaKnown RBP21.26■□□□□ 0.99
Ccdc88a-201ENSMUST00000040182 Irx3P81067 507 aa21.25■□□□□ 0.99
Ccdc88a-201ENSMUST00000040182 Rgl3Q3UYI5 709 aa21.25■□□□□ 0.99
Ccdc88a-201ENSMUST00000040182 Trim26Q99PN3 545 aa21.24■□□□□ 0.99
Ccdc88a-201ENSMUST00000040182 Fam71e1A1L3C1 212 aa21.24■□□□□ 0.99
Ccdc88a-201ENSMUST00000040182 Exosc9Q9JHI7 438 aaKnown RBP21.24■□□□□ 0.99
Ccdc88a-201ENSMUST00000040182 AU015836B2RUM3 263 aa21.23■□□□□ 0.99
Ccdc88a-201ENSMUST00000040182 Golga3P55937 1487 aa21.23■□□□□ 0.99
Ccdc88a-201ENSMUST00000040182 Rsf1E9PWW9 1441 aaKnown RBP21.22■□□□□ 0.99
Ccdc88a-201ENSMUST00000040182 Wwc2Q6NXJ0 1187 aa21.21■□□□□ 0.99
Ccdc88a-201ENSMUST00000040182 Mtus2Q3UHD3 1353 aa21.21■□□□□ 0.99
Ccdc88a-201ENSMUST00000040182 Ubl4bQ9CQ84 188 aa21.2■□□□□ 0.98
Ccdc88a-201ENSMUST00000040182 Ercc6F8VPZ5 1481 aa21.2■□□□□ 0.98
Ccdc88a-201ENSMUST00000040182 P3h3Q8CG70 732 aa21.19■□□□□ 0.98
Ccdc88a-201ENSMUST00000040182 Srpk2O54781 681 aaKnown RBP21.19■□□□□ 0.98
Ccdc88a-201ENSMUST00000040182 Pde3bQ61409 1100 aa21.18■□□□□ 0.98
Ccdc88a-201ENSMUST00000040182 Pes1Q9EQ61 584 aaKnown RBP21.18■□□□□ 0.98
Ccdc88a-201ENSMUST00000040182 Card11Q8CIS0 1159 aa21.17■□□□□ 0.98
Ccdc88a-201ENSMUST00000040182 Fhad1A6PWD2 1420 aa21.16■□□□□ 0.98
Ccdc88a-201ENSMUST00000040182 HnrnpuQ8VEK3 800 aaKnown RBP21.13■□□□□ 0.97
Ccdc88a-201ENSMUST00000040182 Arid4bA2CG63 1314 aaKnown RBP21.12■□□□□ 0.97
Ccdc88a-201ENSMUST00000040182 1700123L14RikQ3V2K7 440 aa21.11■□□□□ 0.97
Ccdc88a-201ENSMUST00000040182 Gm6268A2A3U9 297 aa21.1■□□□□ 0.97
Ccdc88a-201ENSMUST00000040182 MsnP26041 577 aaKnown RBP21.1■□□□□ 0.97
Ccdc88a-201ENSMUST00000040182 Mak16Q8BGS0 296 aaKnown RBP21.09■□□□□ 0.97
Ccdc88a-201ENSMUST00000040182 Mroh3A0A1D5RM54 893 aa21.09■□□□□ 0.97
Ccdc88a-201ENSMUST00000040182 Eif4g2Q62448 906 aaKnown RBP21.07■□□□□ 0.96
Ccdc88a-201ENSMUST00000040182 4933402E13RikQ9D4D2 429 aa21.07■□□□□ 0.96
Ccdc88a-201ENSMUST00000040182 Rwdd1Q9CQK7 243 aa21.05■□□□□ 0.96
Ccdc88a-201ENSMUST00000040182 SetQ9EQU5 289 aaKnown RBP21.05■□□□□ 0.96
Ccdc88a-201ENSMUST00000040182 Cald1E9QA15 768 aaKnown RBP21.05■□□□□ 0.96
Ccdc88a-201ENSMUST00000040182 Tcerg1Q8CGF7 1100 aaKnown RBP21.05■□□□□ 0.96
Ccdc88a-201ENSMUST00000040182 Erich6bQ9D4S6 220 aa21.01■□□□□ 0.95
Ccdc88a-201ENSMUST00000040182 Plppr3Q7TPB0 716 aa21.01■□□□□ 0.95
Ccdc88a-201ENSMUST00000040182 Hsp90b1P08113 802 aaKnown RBP21.01■□□□□ 0.95
Ccdc88a-201ENSMUST00000040182 Tpm3-rs7D3Z2H9 248 aa21■□□□□ 0.95
Ccdc88a-201ENSMUST00000040182 Dnai2A2AC93 623 aa20.99■□□□□ 0.95
Ccdc88a-201ENSMUST00000040182 Kdm2aP59997 1161 aa20.98■□□□□ 0.95
Ccdc88a-201ENSMUST00000040182 RdxP26043 583 aaKnown RBP20.98■□□□□ 0.95
Ccdc88a-201ENSMUST00000040182 Kif15Q6P9L6 1387 aa20.97■□□□□ 0.95
Ccdc88a-201ENSMUST00000040182 Gm20521D3Z5F7 333 aa20.97■□□□□ 0.95
Ccdc88a-201ENSMUST00000040182 Dnai1Q8C0M8 701 aa20.96■□□□□ 0.95
Ccdc88a-201ENSMUST00000040182 Sh3bp5Q9Z131 463 aa20.95■□□□□ 0.95
Ccdc88a-201ENSMUST00000040182 Dnttip2Q8R2M2 758 aaKnown RBP20.95■□□□□ 0.94
Ccdc88a-201ENSMUST00000040182 Sart3Q9JLI8 962 aaKnown RBP20.93■□□□□ 0.94
Ccdc88a-201ENSMUST00000040182 Stag3O70576 1240 aa20.92■□□□□ 0.94
Ccdc88a-201ENSMUST00000040182 Apbb1Q9QXJ1 710 aa20.92■□□□□ 0.94
Ccdc88a-201ENSMUST00000040182 Smarce1O54941 411 aaKnown RBP20.92■□□□□ 0.94
Ccdc88a-201ENSMUST00000040182 R3hcc1Q8BSI6 488 aa20.92■□□□□ 0.94
Ccdc88a-201ENSMUST00000040182 Bcl11aQ9QYE3 773 aa20.91■□□□□ 0.94
Ccdc88a-201ENSMUST00000040182 EspnQ9ET47 871 aa20.91■□□□□ 0.94
Ccdc88a-201ENSMUST00000040182 Map7d2A2AG50 781 aa20.89■□□□□ 0.94
Ccdc88a-201ENSMUST00000040182 Grwd1Q810D6 446 aaKnown RBP20.88■□□□□ 0.93
Ccdc88a-201ENSMUST00000040182 Rrp12Q6P5B0 1295 aaKnown RBP20.88■□□□□ 0.93
Ccdc88a-201ENSMUST00000040182 Tmf1B9EKI3 1091 aa20.88■□□□□ 0.93
Ccdc88a-201ENSMUST00000040182 Neurod2Q62414 383 aa20.87■□□□□ 0.93
Ccdc88a-201ENSMUST00000040182 Irx6Q9ER75 438 aa20.87■□□□□ 0.93
Ccdc88a-201ENSMUST00000040182 Chmp5Q9D7S9 219 aa20.86■□□□□ 0.93
Ccdc88a-201ENSMUST00000040182 Znf316Q6PGE4 1016 aa20.86■□□□□ 0.93
Retrieved 100 of 22,080 RNA–protein pairs in 16.2 ms