RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 RPL7L1Q6DKI1 246 aaKnown RBP1.6□□□□□ -2.15
TRAV28-201ENST00000557548 UNQ5815/PRO19632Q6UWF5 114 aa1.6□□□□□ -2.15
TRAV28-201ENST00000557548 COMMD6Q7Z4G1 85 aa1.6□□□□□ -2.15
TRAV28-201ENST00000557548 LINC00269Q8N2A0 174 aa1.6□□□□□ -2.15
TRAV28-201ENST00000557548 FAM19A2Q8N3H0 131 aa1.6□□□□□ -2.15
TRAV28-201ENST00000557548 OR8B3Q8NGG8 313 aa1.6□□□□□ -2.15
TRAV28-201ENST00000557548 TMEM141Q96I45 108 aa1.6□□□□□ -2.15
TRAV28-201ENST00000557548 C20orf166-AS1Q96NR2 134 aa1.6□□□□□ -2.15
TRAV28-201ENST00000557548 RABAC1Q9UI14 185 aa1.6□□□□□ -2.15
TRAV28-201ENST00000557548 CCL26Q9Y258 94 aa1.6□□□□□ -2.15
TRAV28-201ENST00000557548 KIAA1549LQ6ZVL6 1849 aa1.6□□□□□ -2.15
TRAV28-201ENST00000557548 CCDC88CQ9P219 2028 aa1.6□□□□□ -2.15
TRAV28-201ENST00000557548 CPAMD8Q8IZJ3 1885 aa1.6□□□□□ -2.15
TRAV28-201ENST00000557548 PLXNA4Q9HCM2 1894 aa1.6□□□□□ -2.15
TRAV28-201ENST00000557548 SHROOM3Q8TF72 1996 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 MICAL3Q7RTP6 2002 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 UNC80Q8N2C7 3258 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 PRUNE2Q8WUY3 3088 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 LAMA3Q16787 3333 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 A0A087WSZ3 146 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 A6NIN4 97 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 ERC2-IT1O76042 136 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 SFT2D2O95562 160 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 IGKCP01834 107 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 APOC3P02656 99 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 NMBP08949 121 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 SLC25A6P12236 298 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 CBLN1P23435 193 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 SSR2P43308 183 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 HINT1P49773 126 aaPredicted RBP1.59□□□□□ -2.15
TRAV28-201ENST00000557548 ERHP84090 104 aaKnown RBP1.59□□□□□ -2.15
TRAV28-201ENST00000557548 RBM3P98179 157 aaKnown RBP1.59□□□□□ -2.15
TRAV28-201ENST00000557548 RHOHQ15669 191 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 S100A7L2Q5SY68 101 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 C2orf82Q6UX34 121 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 LINC00299Q6ZSB3 139 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 S100A16Q96FQ6 103 aaKnown RBP1.59□□□□□ -2.15
TRAV28-201ENST00000557548 MGST2Q99735 147 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 SMCO4Q9NRQ5 59 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 NDUFA12Q9UI09 145 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 PSORS1C2Q9UIG4 136 aa1.59□□□□□ -2.15
TRAV28-201ENST00000557548 RANBP2P49792 3224 aaKnown RBP1.59□□□□□ -2.16
TRAV28-201ENST00000557548 DNAH12Q6ZR08 3092 aa1.59□□□□□ -2.16
TRAV28-201ENST00000557548 BRWD1Q9NSI6 2320 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 EML5Q05BV3 1969 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 TRAV10A0A0B4J240 114 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 TRAV17A0A0B4J275 112 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 TRBV7-7A0A0K0K1E9 115 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 MUC21A0A140T8X8 626 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 TCRBV4S1A1TA0A5B7 111 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 IGLC7A0M8Q6 106 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 NAP1L6A6NFF2 107 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 IBA57-AS1B1ANH7 110 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 MRPS14O60783 128 aaKnown RBP1.58□□□□□ -2.16
TRAV28-201ENST00000557548 ASAH2BP0C7U1 165 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 DEFA5Q01523 94 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 HCP5Q6MZN7 132 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 SLC48A1Q6P1K1 146 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 ALKAL2Q6UX46 152 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 MYOZ3Q8TDC0 251 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 ZNF431Q8TF32 576 aaPredicted RBP1.58□□□□□ -2.16
TRAV28-201ENST00000557548 PPDPFLQ8WWR9 84 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 MRPL35Q9NZE8 188 aaKnown RBP1.58□□□□□ -2.16
TRAV28-201ENST00000557548 MUC19Q7Z5P9 8384 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 PLXNA2O75051 1894 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 PDCD11Q14690 1871 aaKnown RBP1.58□□□□□ -2.16
TRAV28-201ENST00000557548 MYO16Q9Y6X6 1858 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 PLIN4Q96Q06 1357 aa1.58□□□□□ -2.16
TRAV28-201ENST00000557548 LAMA2P24043 3122 aaKnown RBP1.57□□□□□ -2.16
TRAV28-201ENST00000557548 SPTBN5Q9NRC6 3674 aaKnown RBP1.57□□□□□ -2.16
TRAV28-201ENST00000557548 MUC4Q99102 2169 aa1.57□□□□□ -2.16
TRAV28-201ENST00000557548 IGKV3D-11A0A0A0MRZ8 115 aa1.57□□□□□ -2.16
TRAV28-201ENST00000557548 TRBV10-3A0A0K0K1G6 114 aa1.57□□□□□ -2.16
TRAV28-201ENST00000557548 hADV29S1A0JD25 119 aa1.57□□□□□ -2.16
TRAV28-201ENST00000557548 CCKP06307 115 aa1.57□□□□□ -2.16
TRAV28-201ENST00000557548 CXCL8P10145 99 aa1.57□□□□□ -2.16
TRAV28-201ENST00000557548 FAUP35544 74 aaKnown RBP1.57□□□□□ -2.16
TRAV28-201ENST00000557548 GNG11P61952 73 aa1.57□□□□□ -2.16
TRAV28-201ENST00000557548 SEC11AP67812 179 aa1.57□□□□□ -2.16
TRAV28-201ENST00000557548 CCL8P80075 99 aa1.57□□□□□ -2.16
TRAV28-201ENST00000557548 ADIRFQ15847 76 aa1.57□□□□□ -2.16
TRAV28-201ENST00000557548 Q1T7F1 81 aa1.57□□□□□ -2.16
TRAV28-201ENST00000557548 TSLPQ969D9 159 aa1.57□□□□□ -2.16
TRAV28-201ENST00000557548 LCE3DQ9BYE3 92 aa1.57□□□□□ -2.16
TRAV28-201ENST00000557548 REG4Q9BYZ8 158 aa1.57□□□□□ -2.16
TRAV28-201ENST00000557548 NDUFB11Q9NX14 153 aa1.57□□□□□ -2.16
TRAV28-201ENST00000557548 CEP192Q8TEP8 1941 aa1.57□□□□□ -2.16
TRAV28-201ENST00000557548 COL4A6Q14031 1691 aa1.57□□□□□ -2.16
TRAV28-201ENST00000557548 VCANP13611 3396 aa1.56□□□□□ -2.16
TRAV28-201ENST00000557548 PTPRDP23468 1912 aa1.56□□□□□ -2.16
TRAV28-201ENST00000557548 KIAA1549Q9HCM3 1950 aa1.56□□□□□ -2.16
TRAV28-201ENST00000557548 MUC3AQ02505 3323 aa1.56□□□□□ -2.16
TRAV28-201ENST00000557548 TMSB15BA0A087X1C1 80 aa1.56□□□□□ -2.16
TRAV28-201ENST00000557548 TRAV12-1A0A0B4J245 112 aa1.56□□□□□ -2.16
TRAV28-201ENST00000557548 CRYM-AS1A6NIL9 109 aa1.56□□□□□ -2.16
TRAV28-201ENST00000557548 PDCD5O14737 125 aa1.56□□□□□ -2.16
TRAV28-201ENST00000557548 NDUFC1O43677 76 aa1.56□□□□□ -2.16
TRAV28-201ENST00000557548 NUPR1O60356 82 aa1.56□□□□□ -2.16
TRAV28-201ENST00000557548 UBE2G1P62253 170 aa1.56□□□□□ -2.16
TRAV28-201ENST00000557548 MIR22HGQ0VDD5 57 aa1.56□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms