RNA–Protein interactions for RNA: ENST00000548877.1

CDX2-202, Transcript of caudal type homeobox 2, humanhuman

TSL 3

Gene CDX2, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2-202ENST00000548877 IGKV3D-20A0A0C4DH25 116 aa8.97□□□□□ -0.97
CDX2-202ENST00000548877 S100A4P26447 101 aaKnown RBP8.97□□□□□ -0.97
CDX2-202ENST00000548877 ASIPP42127 132 aa8.97□□□□□ -0.97
CDX2-202ENST00000548877 TWIST1Q15672 202 aa8.97□□□□□ -0.97
CDX2-202ENST00000548877 DNLZQ5SXM8 178 aa8.97□□□□□ -0.97
CDX2-202ENST00000548877 Q6ZQT7 251 aa8.97□□□□□ -0.97
CDX2-202ENST00000548877 SNAI2O43623 268 aa8.96□□□□□ -0.98
CDX2-202ENST00000548877 KIAA1644Q3SXP7 199 aa8.96□□□□□ -0.98
CDX2-202ENST00000548877 TDRG1Q3Y452 100 aa8.96□□□□□ -0.98
CDX2-202ENST00000548877 FAM159AQ6UWV7 190 aa8.96□□□□□ -0.98
CDX2-202ENST00000548877 ALKBH7Q9BT30 221 aaPredicted RBP8.96□□□□□ -0.98
CDX2-202ENST00000548877 SPXQ9BT56 116 aa8.96□□□□□ -0.98
CDX2-202ENST00000548877 SSBP4Q9BWG4 385 aaPredicted RBP8.96□□□□□ -0.98
CDX2-202ENST00000548877 TMEM191AQ9H0A3 160 aa8.96□□□□□ -0.98
CDX2-202ENST00000548877 GRIFINA4D1Z8 144 aa8.95□□□□□ -0.98
CDX2-202ENST00000548877 PPBPP02775 128 aa8.95□□□□□ -0.98
CDX2-202ENST00000548877 FABP4P15090 132 aa8.95□□□□□ -0.98
CDX2-202ENST00000548877 NTF3P20783 257 aa8.95□□□□□ -0.98
CDX2-202ENST00000548877 LAGE3Q14657 143 aa8.95□□□□□ -0.98
CDX2-202ENST00000548877 FAM104BQ5XKR9 115 aa8.95□□□□□ -0.98
CDX2-202ENST00000548877 HIST1H2BLQ99880 126 aa8.95□□□□□ -0.98
CDX2-202ENST00000548877 NAGKQ9UJ70 344 aa8.95□□□□□ -0.98
CDX2-202ENST00000548877 TRAV4A0A0B4J268 109 aa8.94□□□□□ -0.98
CDX2-202ENST00000548877 WFDC2Q14508 124 aa8.94□□□□□ -0.98
CDX2-202ENST00000548877 SPANXN1Q5VSR9 72 aa8.94□□□□□ -0.98
CDX2-202ENST00000548877 SCXQ7RTU7 201 aa8.94□□□□□ -0.98
CDX2-202ENST00000548877 LINC00518Q8N0U6 118 aa8.94□□□□□ -0.98
CDX2-202ENST00000548877 C18orf32Q8TCD1 76 aa8.94□□□□□ -0.98
CDX2-202ENST00000548877 TM2D2Q9BX73 214 aa8.94□□□□□ -0.98
CDX2-202ENST00000548877 SAMD10Q9BYL1 202 aa8.94□□□□□ -0.98
CDX2-202ENST00000548877 C11orf21Q9P2W6 132 aa8.94□□□□□ -0.98
CDX2-202ENST00000548877 LAMTOR2Q9Y2Q5 125 aa8.94□□□□□ -0.98
CDX2-202ENST00000548877 SERF1AO75920 110 aa8.93□□□□□ -0.98
CDX2-202ENST00000548877 PDZD11Q5EBL8 140 aa8.93□□□□□ -0.98
CDX2-202ENST00000548877 ORMDL3Q8N138 153 aa8.93□□□□□ -0.98
CDX2-202ENST00000548877 OR10D4PQ8NGN7 298 aa8.93□□□□□ -0.98
CDX2-202ENST00000548877 CHCHD1Q96BP2 118 aaKnown RBP8.93□□□□□ -0.98
CDX2-202ENST00000548877 Q9HAA7 133 aa8.93□□□□□ -0.98
CDX2-202ENST00000548877 PHLDA3Q9Y5J5 127 aa8.93□□□□□ -0.98
CDX2-202ENST00000548877 TRAV8-6A0A0B4J262 113 aa8.92□□□□□ -0.98
CDX2-202ENST00000548877 LOC100131303A0A0U1RQF7 123 aa8.92□□□□□ -0.98
CDX2-202ENST00000548877 IFITM10A6NMD0 228 aa8.92□□□□□ -0.98
CDX2-202ENST00000548877 RAB4AP20338 218 aa8.92□□□□□ -0.98
CDX2-202ENST00000548877 PMCHP20382 165 aa8.92□□□□□ -0.98
CDX2-202ENST00000548877 TRGV11A0A075B6L2 103 aa8.91□□□□□ -0.98
CDX2-202ENST00000548877 H3BVH4 76 aa8.91□□□□□ -0.98
CDX2-202ENST00000548877 GATA1P15976 413 aaPredicted RBP8.91□□□□□ -0.98
CDX2-202ENST00000548877 C12orf57Q99622 126 aa8.91□□□□□ -0.98
CDX2-202ENST00000548877 CHAC1Q9BUX1 264 aa8.91□□□□□ -0.98
CDX2-202ENST00000548877 HSBP1O75506 76 aa8.9□□□□□ -0.98
CDX2-202ENST00000548877 CKS2P33552 79 aa8.9□□□□□ -0.98
CDX2-202ENST00000548877 MUC21Q5SSG8 566 aa8.9□□□□□ -0.98
CDX2-202ENST00000548877 OR4C5Q8NGB2 326 aa8.9□□□□□ -0.98
CDX2-202ENST00000548877 OR10AG1Q8NH19 301 aa8.9□□□□□ -0.98
CDX2-202ENST00000548877 PRELID3AQ96N28 172 aa8.9□□□□□ -0.98
CDX2-202ENST00000548877 PPP1R17O96001 155 aa8.89□□□□□ -0.99
CDX2-202ENST00000548877 AMTP48728 403 aa8.89□□□□□ -0.99
CDX2-202ENST00000548877 LELP1Q5T871 98 aa8.89□□□□□ -0.99
CDX2-202ENST00000548877 AMN1Q8IY45 258 aa8.89□□□□□ -0.99
CDX2-202ENST00000548877 MRAP2Q96G30 205 aa8.89□□□□□ -0.99
CDX2-202ENST00000548877 AP1S3Q96PC3 154 aa8.89□□□□□ -0.99
CDX2-202ENST00000548877 TRAV8-3A0A0A6YYJ7 113 aa8.88□□□□□ -0.99
CDX2-202ENST00000548877 D6R8Y8 96 aa8.88□□□□□ -0.99
CDX2-202ENST00000548877 M0R2P5 195 aa8.88□□□□□ -0.99
CDX2-202ENST00000548877 LINC00614P0C842 121 aa8.88□□□□□ -0.99
CDX2-202ENST00000548877 MRPL51Q4U2R6 128 aaKnown RBP8.88□□□□□ -0.99
CDX2-202ENST00000548877 RNASEKQ6P5S7 137 aaKnown RBP8.88□□□□□ -0.99
CDX2-202ENST00000548877 FA2HQ7L5A8 372 aa8.88□□□□□ -0.99
CDX2-202ENST00000548877 CIRBP-AS1Q8TBR5 109 aa8.88□□□□□ -0.99
CDX2-202ENST00000548877 MUC21A0A0G2JKD1 596 aa8.87□□□□□ -0.99
CDX2-202ENST00000548877 MUC21A0A140T8X8 626 aa8.87□□□□□ -0.99
CDX2-202ENST00000548877 CIDEAO60543 219 aa8.87□□□□□ -0.99
CDX2-202ENST00000548877 IGHV3-30P01768 117 aa8.87□□□□□ -0.99
CDX2-202ENST00000548877 IGHV3-33P01772 117 aa8.87□□□□□ -0.99
CDX2-202ENST00000548877 SMIM17P0DL12 118 aa8.87□□□□□ -0.99
CDX2-202ENST00000548877 IGHV3-30-3P0DP02 117 aa8.87□□□□□ -0.99
CDX2-202ENST00000548877 IGHV3-30-5P0DP03 117 aa8.87□□□□□ -0.99
CDX2-202ENST00000548877 RNASE3P12724 160 aaKnown RBP8.87□□□□□ -0.99
CDX2-202ENST00000548877 LINC00310P59036 64 aa8.87□□□□□ -0.99
CDX2-202ENST00000548877 SSTP61278 116 aa8.87□□□□□ -0.99
CDX2-202ENST00000548877 JOSD1Q15040 202 aaPredicted RBP8.87□□□□□ -0.99
CDX2-202ENST00000548877 IQCJQ1A5X6 159 aa8.87□□□□□ -0.99
CDX2-202ENST00000548877 NIT1Q86X76 327 aa8.87□□□□□ -0.99
CDX2-202ENST00000548877 PRSS3P2Q8NHM4 247 aa8.87□□□□□ -0.99
CDX2-202ENST00000548877 MAP1LC3AQ9H492 121 aa8.87□□□□□ -0.99
CDX2-202ENST00000548877 DPH3P1Q9H4G8 78 aa8.87□□□□□ -0.99
CDX2-202ENST00000548877 IGHV3-16A0A0C4DH30 117 aa8.86□□□□□ -0.99
CDX2-202ENST00000548877 M0R381 172 aa8.86□□□□□ -0.99
CDX2-202ENST00000548877 RS1O15537 224 aa8.86□□□□□ -0.99
CDX2-202ENST00000548877 GNRH2O43555 120 aa8.86□□□□□ -0.99
CDX2-202ENST00000548877 PIK3CD-AS1Q5SR53 167 aa8.86□□□□□ -0.99
CDX2-202ENST00000548877 SLC25A29Q8N8R3 303 aa8.86□□□□□ -0.99
CDX2-202ENST00000548877 RNF185Q96GF1 192 aa8.86□□□□□ -0.99
CDX2-202ENST00000548877 C9orf85Q96MD7 179 aa8.86□□□□□ -0.99
CDX2-202ENST00000548877 NXT2Q9NPJ8 142 aaKnown RBP8.86□□□□□ -0.99
CDX2-202ENST00000548877 AP5S1Q9NUS5 200 aa8.86□□□□□ -0.99
CDX2-202ENST00000548877 COX11Q9Y6N1 276 aa8.86□□□□□ -0.99
CDX2-202ENST00000548877 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.85□□□□□ -0.99
CDX2-202ENST00000548877 TRBV6-4A0A1B0GX49 114 aa8.85□□□□□ -0.99
CDX2-202ENST00000548877 NUPR1O60356 82 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms