RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 DIRAS2Q96HU8 199 aa3.84□□□□□ -1.79
CD44-237ENST00000534082 VPS25Q9BRG1 176 aa3.84□□□□□ -1.79
CD44-237ENST00000534082 Q9H521 79 aa3.84□□□□□ -1.79
CD44-237ENST00000534082 MED9Q9NWA0 146 aa3.84□□□□□ -1.79
CD44-237ENST00000534082 MACF1Q9UPN3 7388 aaKnown RBP3.84□□□□□ -1.8
CD44-237ENST00000534082 TRAV8-4A0A0B4J246 113 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 ANKRD20A5PA0PJZ0 165 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 M0QXV9 152 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 SFT2D2O95562 160 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 P01737 135 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 GZMBP10144 247 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 CRYGAP11844 174 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 AKR1C3P42330 323 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 ZNF80P51504 273 aaPredicted RBP3.83□□□□□ -1.8
CD44-237ENST00000534082 SEC61GP60059 68 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 RAB2AP61019 212 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 NCS1P62166 190 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 BAXQ07812 192 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 GAGE6Q13070 117 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 PPP1R1AQ13522 171 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 Q5BKY6 102 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 CLLU1Q5K131 121 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 GOLT1AQ6ZVE7 132 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 ERASQ7Z444 233 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 HYLS1Q96M11 299 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 SLIRPQ9GZT3 109 aaKnown RBP3.83□□□□□ -1.8
CD44-237ENST00000534082 UQCC1Q9NVA1 299 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 PKIGQ9Y2B9 76 aa3.83□□□□□ -1.8
CD44-237ENST00000534082 M0R036 132 aa3.82□□□□□ -1.8
CD44-237ENST00000534082 OR7C2O60412 319 aa3.82□□□□□ -1.8
CD44-237ENST00000534082 IGLV7-43P04211 117 aa3.82□□□□□ -1.8
CD44-237ENST00000534082 S100A4P26447 101 aaKnown RBP3.82□□□□□ -1.8
CD44-237ENST00000534082 RPS20P60866 119 aaKnown RBP3.82□□□□□ -1.8
CD44-237ENST00000534082 UBE2L3P68036 154 aaKnown RBP3.82□□□□□ -1.8
CD44-237ENST00000534082 TPRXLQ17RH7 258 aa3.82□□□□□ -1.8
CD44-237ENST00000534082 RNASEKQ6P5S7 137 aaKnown RBP3.82□□□□□ -1.8
CD44-237ENST00000534082 OR10G8Q8NGN5 311 aa3.82□□□□□ -1.8
CD44-237ENST00000534082 SFRP2Q96HF1 295 aa3.82□□□□□ -1.8
CD44-237ENST00000534082 NMES1Q9C002 83 aa3.82□□□□□ -1.8
CD44-237ENST00000534082 WFDC1Q9HC57 220 aa3.82□□□□□ -1.8
CD44-237ENST00000534082 RAB26Q9ULW5 256 aa3.82□□□□□ -1.8
CD44-237ENST00000534082 GVQW2A0A096LPI5 108 aaPredicted RBP3.81□□□□□ -1.8
CD44-237ENST00000534082 C7orf66A4D0T2 115 aa3.81□□□□□ -1.8
CD44-237ENST00000534082 CST7O76096 145 aa3.81□□□□□ -1.8
CD44-237ENST00000534082 GCGP01275 180 aa3.81□□□□□ -1.8
CD44-237ENST00000534082 FGF7P21781 194 aa3.81□□□□□ -1.8
CD44-237ENST00000534082 AMTP48728 403 aa3.81□□□□□ -1.8
CD44-237ENST00000534082 CYCSP99999 105 aaKnown RBP3.81□□□□□ -1.8
CD44-237ENST00000534082 NTM-AS1Q6ZSK4 140 aa3.81□□□□□ -1.8
CD44-237ENST00000534082 CMTM2Q8TAZ6 248 aa3.81□□□□□ -1.8
CD44-237ENST00000534082 DEDD2Q8WXF8 326 aa3.81□□□□□ -1.8
CD44-237ENST00000534082 RETNLBQ9BQ08 111 aa3.81□□□□□ -1.8
CD44-237ENST00000534082 NDFIP1Q9BT67 221 aa3.81□□□□□ -1.8
CD44-237ENST00000534082 LYRM2Q9NU23 88 aaPredicted RBP3.81□□□□□ -1.8
CD44-237ENST00000534082 OR5AC2Q9NZP5 309 aa3.81□□□□□ -1.8
CD44-237ENST00000534082 FCGBPQ9Y6R7 5405 aaPredicted RBP3.81□□□□□ -1.8
CD44-237ENST00000534082 TRBV25-1A0A075B6N4 114 aa3.8□□□□□ -1.8
CD44-237ENST00000534082 A0A1W2PNN7 141 aa3.8□□□□□ -1.8
CD44-237ENST00000534082 H3BVH4 76 aa3.8□□□□□ -1.8
CD44-237ENST00000534082 M0R143 59 aa3.8□□□□□ -1.8
CD44-237ENST00000534082 MBPP02686 304 aaPredicted RBP3.8□□□□□ -1.8
CD44-237ENST00000534082 PET100P0DJ07 73 aa3.8□□□□□ -1.8
CD44-237ENST00000534082 RAB5BP61020 215 aa3.8□□□□□ -1.8
CD44-237ENST00000534082 PRR27Q6MZM9 219 aa3.8□□□□□ -1.8
CD44-237ENST00000534082 TCTE3Q8IZS6 198 aa3.8□□□□□ -1.8
CD44-237ENST00000534082 C20orf203Q8NBC4 194 aa3.8□□□□□ -1.8
CD44-237ENST00000534082 NEXN-AS1Q8NBZ9 246 aa3.8□□□□□ -1.8
CD44-237ENST00000534082 OR11H4Q8NGC9 324 aa3.8□□□□□ -1.8
CD44-237ENST00000534082 MCFD2Q8NI22 146 aa3.8□□□□□ -1.8
CD44-237ENST00000534082 OTORQ9NRC9 128 aa3.8□□□□□ -1.8
CD44-237ENST00000534082 IL36BQ9NZH7 164 aa3.8□□□□□ -1.8
CD44-237ENST00000534082 PHLDA3Q9Y5J5 127 aa3.8□□□□□ -1.8
CD44-237ENST00000534082 IGKV3D-20A0A0C4DH25 116 aa3.79□□□□□ -1.8
CD44-237ENST00000534082 GAGE10A6NGK3 116 aa3.79□□□□□ -1.8
CD44-237ENST00000534082 CFC1BP0CG36 223 aa3.79□□□□□ -1.8
CD44-237ENST00000534082 GNG5P63218 68 aa3.79□□□□□ -1.8
CD44-237ENST00000534082 EIF5AP63241 154 aaKnown RBP3.79□□□□□ -1.8
CD44-237ENST00000534082 IAH1Q2TAA2 248 aaPredicted RBP3.79□□□□□ -1.8
CD44-237ENST00000534082 TMEM97Q5BJF2 176 aa3.79□□□□□ -1.8
CD44-237ENST00000534082 PHF5AQ7RTV0 110 aaKnown RBP3.79□□□□□ -1.8
CD44-237ENST00000534082 SGK494Q96LW2 274 aa3.79□□□□□ -1.8
CD44-237ENST00000534082 CARD19Q96LW7 228 aa3.79□□□□□ -1.8
CD44-237ENST00000534082 DERL1Q9BUN8 251 aa3.79□□□□□ -1.8
CD44-237ENST00000534082 MAP1LC3CQ9BXW4 147 aa3.79□□□□□ -1.8
CD44-237ENST00000534082 NPCDR1Q9BY65 106 aa3.79□□□□□ -1.8
CD44-237ENST00000534082 IGLV4-60A0A075B6I1 120 aa3.78□□□□□ -1.8
CD44-237ENST00000534082 A0A0U1RRA0 63 aa3.78□□□□□ -1.8
CD44-237ENST00000534082 H3BMQ9 156 aa3.78□□□□□ -1.8
CD44-237ENST00000534082 M0R381 172 aa3.78□□□□□ -1.8
CD44-237ENST00000534082 SULT1A2P50226 295 aa3.78□□□□□ -1.8
CD44-237ENST00000534082 SNRPEP62304 92 aaKnown RBP3.78□□□□□ -1.8
CD44-237ENST00000534082 IFITM3Q01628 133 aa3.78□□□□□ -1.8
CD44-237ENST00000534082 GAGE2BQ13066 116 aa3.78□□□□□ -1.8
CD44-237ENST00000534082 CTF1Q16619 201 aa3.78□□□□□ -1.8
CD44-237ENST00000534082 IQCJQ1A5X6 159 aa3.78□□□□□ -1.8
CD44-237ENST00000534082 FAM74A1Q5RGS3 127 aa3.78□□□□□ -1.8
CD44-237ENST00000534082 SDHCQ99643 169 aaPredicted RBP3.78□□□□□ -1.8
CD44-237ENST00000534082 KRTAP4-1Q9BYQ7 146 aa3.78□□□□□ -1.8
CD44-237ENST00000534082 ZFP30Q9Y2G7 519 aa3.78□□□□□ -1.8
CD44-237ENST00000534082 CARHSP1Q9Y2V2 147 aaKnown RBP3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms