RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 TM2D2Q9BX73 214 aa8.85□□□□□ -0.99
SYNPO-204ENST00000519664 A0A1W2PPR1 153 aa8.85□□□□□ -0.99
SYNPO-204ENST00000519664 HIST1H4AP62805 103 aaKnown RBP8.85□□□□□ -0.99
SYNPO-204ENST00000519664 MUSTN1Q8IVN3 82 aa8.85□□□□□ -0.99
SYNPO-204ENST00000519664 PRM2P04554 102 aa8.84□□□□□ -0.99
SYNPO-204ENST00000519664 INAFM2P0DMQ5 153 aa8.84□□□□□ -0.99
SYNPO-204ENST00000519664 RHOHQ15669 191 aa8.84□□□□□ -0.99
SYNPO-204ENST00000519664 LAMTOR3Q9UHA4 124 aa8.84□□□□□ -0.99
SYNPO-204ENST00000519664 RS1O15537 224 aa8.84□□□□□ -0.99
SYNPO-204ENST00000519664 AGRNO00468 2067 aa8.84□□□□□ -0.99
SYNPO-204ENST00000519664 DEFB4AO15263 64 aa8.83□□□□□ -1
SYNPO-204ENST00000519664 EBI3Q14213 229 aa8.83□□□□□ -1
SYNPO-204ENST00000519664 USP34Q70CQ2 3546 aa8.83□□□□□ -1
SYNPO-204ENST00000519664 J3QKU1 62 aa8.83□□□□□ -1
SYNPO-204ENST00000519664 K7EMT4 169 aa8.83□□□□□ -1
SYNPO-204ENST00000519664 ANGP03950 147 aaKnown RBP8.83□□□□□ -1
SYNPO-204ENST00000519664 RPL32P62910 135 aaKnown RBP8.83□□□□□ -1
SYNPO-204ENST00000519664 ACYP1P07311 99 aa8.83□□□□□ -1
SYNPO-204ENST00000519664 CARD19Q96LW7 228 aa8.83□□□□□ -1
SYNPO-204ENST00000519664 IGLV10-54A0A075B6I4 117 aa8.83□□□□□ -1
SYNPO-204ENST00000519664 TOMM6Q96B49 74 aa8.83□□□□□ -1
SYNPO-204ENST00000519664 ZFAND2AQ8N6M9 145 aa8.82□□□□□ -1
SYNPO-204ENST00000519664 NBEAQ8NFP9 2946 aa8.82□□□□□ -1
SYNPO-204ENST00000519664 TNFRSF13BO14836 293 aaPredicted RBP8.82□□□□□ -1
SYNPO-204ENST00000519664 HECTD1Q9ULT8 2610 aa8.82□□□□□ -1
SYNPO-204ENST00000519664 PRR9Q5T870 116 aa8.82□□□□□ -1
SYNPO-204ENST00000519664 C3orf56Q8N813 242 aa8.82□□□□□ -1
SYNPO-204ENST00000519664 FAM236AA0A1B0GUQ0 79 aa8.81□□□□□ -1
SYNPO-204ENST00000519664 FAM236BA0A1B0GV22 79 aa8.81□□□□□ -1
SYNPO-204ENST00000519664 COL5A1P20908 1838 aaPredicted RBP8.81□□□□□ -1
SYNPO-204ENST00000519664 RNF185Q96GF1 192 aa8.81□□□□□ -1
SYNPO-204ENST00000519664 HERVK_113P63121 156 aa8.81□□□□□ -1
SYNPO-204ENST00000519664 MAPKAPK5-AS1Q8N8E1 139 aa8.81□□□□□ -1
SYNPO-204ENST00000519664 URB1-AS1Q96HZ7 61 aa8.8□□□□□ -1
SYNPO-204ENST00000519664 LINC01620Q4KN68 170 aa8.8□□□□□ -1
SYNPO-204ENST00000519664 PROK1P58294 105 aa8.8□□□□□ -1
SYNPO-204ENST00000519664 SRSF2Q01130 221 aaKnown RBP8.8□□□□□ -1
SYNPO-204ENST00000519664 TNRC6BQ9UPQ9 1833 aaKnown RBP8.79□□□□□ -1
SYNPO-204ENST00000519664 MRPL23Q16540 153 aaKnown RBP8.79□□□□□ -1
SYNPO-204ENST00000519664 Q8N6K4 173 aa8.79□□□□□ -1
SYNPO-204ENST00000519664 C20orf203Q8NBC4 194 aa8.79□□□□□ -1
SYNPO-204ENST00000519664 EDN2P20800 178 aa8.79□□□□□ -1
SYNPO-204ENST00000519664 AVPP01185 164 aa8.79□□□□□ -1
SYNPO-204ENST00000519664 WFDC11Q8NEX6 87 aa8.79□□□□□ -1
SYNPO-204ENST00000519664 TRAV12-1A0A0B4J245 112 aa8.78□□□□□ -1
SYNPO-204ENST00000519664 XGP55808 180 aa8.78□□□□□ -1
SYNPO-204ENST00000519664 C1orf43Q9BWL3 253 aa8.78□□□□□ -1
SYNPO-204ENST00000519664 OVOL2Q9BRP0 275 aa8.78□□□□□ -1
SYNPO-204ENST00000519664 TINCRA0A1B0GVN0 87 aa8.78□□□□□ -1
SYNPO-204ENST00000519664 RAI1Q7Z5J4 1906 aaPredicted RBP8.77□□□□□ -1
SYNPO-204ENST00000519664 PRORYQ9H606 182 aa8.77□□□□□ -1.01
SYNPO-204ENST00000519664 FSTL3O95633 263 aa8.77□□□□□ -1.01
SYNPO-204ENST00000519664 GYPEP15421 78 aa8.77□□□□□ -1.01
SYNPO-204ENST00000519664 TIMM17AQ99595 171 aa8.77□□□□□ -1.01
SYNPO-204ENST00000519664 PTPRBP23467 1997 aa8.77□□□□□ -1.01
SYNPO-204ENST00000519664 FRYQ5TBA9 3013 aa8.77□□□□□ -1.01
SYNPO-204ENST00000519664 K7EQG2 157 aa8.77□□□□□ -1.01
SYNPO-204ENST00000519664 ATOX1O00244 68 aa8.77□□□□□ -1.01
SYNPO-204ENST00000519664 TRBV7-3A0A075B6L6 115 aa8.76□□□□□ -1.01
SYNPO-204ENST00000519664 INSL3P51460 131 aa8.76□□□□□ -1.01
SYNPO-204ENST00000519664 PIFOQ8TCI5 191 aa8.76□□□□□ -1.01
SYNPO-204ENST00000519664 FAM110AQ9BQ89 295 aa8.76□□□□□ -1.01
SYNPO-204ENST00000519664 CLPSL1A2RUU4 121 aa8.76□□□□□ -1.01
SYNPO-204ENST00000519664 TCL1BO95988 128 aa8.76□□□□□ -1.01
SYNPO-204ENST00000519664 IGHV3-30-3P0DP02 117 aa8.76□□□□□ -1.01
SYNPO-204ENST00000519664 Q6ZTI0 123 aa8.76□□□□□ -1.01
SYNPO-204ENST00000519664 C18orf65Q6ZTR6 163 aa8.76□□□□□ -1.01
SYNPO-204ENST00000519664 TRBV10-2A0A0K0K1G8 114 aa8.75□□□□□ -1.01
SYNPO-204ENST00000519664 MAP6D1Q9H9H5 199 aa8.75□□□□□ -1.01
SYNPO-204ENST00000519664 ATRQ13535 2644 aa8.75□□□□□ -1.01
SYNPO-204ENST00000519664 ZNF561-AS1K7EIQ3 104 aa8.75□□□□□ -1.01
SYNPO-204ENST00000519664 MUC4Q99102 2169 aa8.75□□□□□ -1.01
SYNPO-204ENST00000519664 FRYLO94915 3013 aa8.75□□□□□ -1.01
SYNPO-204ENST00000519664 ATP5G1P05496 136 aa8.75□□□□□ -1.01
SYNPO-204ENST00000519664 COL6A3P12111 3177 aa8.75□□□□□ -1.01
SYNPO-204ENST00000519664 CCDC179H3BU77 68 aa8.75□□□□□ -1.01
SYNPO-204ENST00000519664 NDUFA11Q86Y39 141 aa8.75□□□□□ -1.01
SYNPO-204ENST00000519664 F8W735 103 aaPredicted RBP8.74□□□□□ -1.01
SYNPO-204ENST00000519664 K7EQD1 137 aa8.74□□□□□ -1.01
SYNPO-204ENST00000519664 RNASE3P12724 160 aaKnown RBP8.74□□□□□ -1.01
SYNPO-204ENST00000519664 CFAP126Q5VTH2 177 aa8.74□□□□□ -1.01
SYNPO-204ENST00000519664 DEFB135Q30KP9 77 aa8.74□□□□□ -1.01
SYNPO-204ENST00000519664 CLEC2BQ92478 149 aa8.74□□□□□ -1.01
SYNPO-204ENST00000519664 H3BT86 120 aa8.74□□□□□ -1.01
SYNPO-204ENST00000519664 MRPS12O15235 138 aaKnown RBP8.74□□□□□ -1.01
SYNPO-204ENST00000519664 MED14OSP0DP75 135 aa8.74□□□□□ -1.01
SYNPO-204ENST00000519664 F8P00451 2351 aa8.73□□□□□ -1.01
SYNPO-204ENST00000519664 A8MZ25 164 aa8.73□□□□□ -1.01
SYNPO-204ENST00000519664 UQCRQO14949 82 aa8.73□□□□□ -1.01
SYNPO-204ENST00000519664 SLC25A29Q8N8R3 303 aa8.73□□□□□ -1.01
SYNPO-204ENST00000519664 NEXN-AS1Q8NBZ9 246 aa8.73□□□□□ -1.01
SYNPO-204ENST00000519664 DNAJC9-AS1A6NH13 148 aa8.73□□□□□ -1.01
SYNPO-204ENST00000519664 NRACQ8N912 160 aa8.73□□□□□ -1.01
SYNPO-204ENST00000519664 AKAP13Q12802 2813 aa8.73□□□□□ -1.01
SYNPO-204ENST00000519664 TRAV4A0A0B4J268 109 aa8.73□□□□□ -1.01
SYNPO-204ENST00000519664 CRLF1O75462 422 aa8.73□□□□□ -1.01
SYNPO-204ENST00000519664 BAALC-AS2P0C853 105 aa8.72□□□□□ -1.01
SYNPO-204ENST00000519664 IGHV4-31P0DP07 118 aa8.72□□□□□ -1.01
SYNPO-204ENST00000519664 MRGPRG-AS1Q2M3A8 158 aa8.72□□□□□ -1.01
SYNPO-204ENST00000519664 VSIG2Q96IQ7 327 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms