RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 HIST2H2BCQ6DN03 193 aa9.56□□□□□ -0.88
USP53-209ENST00000514665 VSIG2Q96IQ7 327 aa9.56□□□□□ -0.88
USP53-209ENST00000514665 GAS8-AS1O95177 125 aa9.56□□□□□ -0.88
USP53-209ENST00000514665 IGHG4P01861 327 aa9.56□□□□□ -0.88
USP53-209ENST00000514665 MAPKAPK5-AS1Q8N8E1 139 aa9.56□□□□□ -0.88
USP53-209ENST00000514665 CDSNQ15517 529 aa9.56□□□□□ -0.88
USP53-209ENST00000514665 CITED2Q99967 270 aaPredicted RBP9.56□□□□□ -0.88
USP53-209ENST00000514665 HERV-K104P63124 156 aa9.55□□□□□ -0.88
USP53-209ENST00000514665 DAZ2Q13117 558 aaKnown RBP9.55□□□□□ -0.88
USP53-209ENST00000514665 DAZ4Q86SG3 579 aaKnown RBP9.55□□□□□ -0.88
USP53-209ENST00000514665 NKAPP1Q8N9T2 125 aa9.55□□□□□ -0.88
USP53-209ENST00000514665 CLEC2BQ92478 149 aa9.55□□□□□ -0.88
USP53-209ENST00000514665 RNF185Q96GF1 192 aa9.55□□□□□ -0.88
USP53-209ENST00000514665 DAZ3Q9NR90 486 aaKnown RBP9.55□□□□□ -0.88
USP53-209ENST00000514665 FOXI1Q12951 378 aa9.55□□□□□ -0.88
USP53-209ENST00000514665 Q6ZUT4 128 aa9.55□□□□□ -0.88
USP53-209ENST00000514665 F8WEM9 126 aa9.55□□□□□ -0.88
USP53-209ENST00000514665 C11orf21Q9P2W6 132 aa9.55□□□□□ -0.88
USP53-209ENST00000514665 K7EQG2 157 aa9.54□□□□□ -0.88
USP53-209ENST00000514665 HIST2H2BDQ6DRA6 164 aa9.54□□□□□ -0.88
USP53-209ENST00000514665 C16orf74Q96GX8 76 aa9.54□□□□□ -0.88
USP53-209ENST00000514665 Q9HAA7 133 aa9.54□□□□□ -0.88
USP53-209ENST00000514665 TNRC6BQ9UPQ9 1833 aaKnown RBP9.54□□□□□ -0.88
USP53-209ENST00000514665 MYO15AQ9UKN7 3530 aa9.54□□□□□ -0.88
USP53-209ENST00000514665 CELSR3Q9NYQ7 3312 aa9.54□□□□□ -0.88
USP53-209ENST00000514665 NDUFA11Q86Y39 141 aa9.54□□□□□ -0.88
USP53-209ENST00000514665 IGHV1-58A0A0C4DH39 117 aa9.53□□□□□ -0.88
USP53-209ENST00000514665 FSTL3O95633 263 aa9.53□□□□□ -0.88
USP53-209ENST00000514665 IGHV4-4A0A075B6R2 117 aa9.53□□□□□ -0.88
USP53-209ENST00000514665 C11orf71Q6IPW1 123 aa9.53□□□□□ -0.88
USP53-209ENST00000514665 MAP6D1Q9H9H5 199 aa9.53□□□□□ -0.88
USP53-209ENST00000514665 CHD9Q3L8U1 2897 aa9.53□□□□□ -0.88
USP53-209ENST00000514665 G3V4G9 280 aa9.52□□□□□ -0.88
USP53-209ENST00000514665 COX7B2Q8TF08 81 aa9.52□□□□□ -0.88
USP53-209ENST00000514665 TMEM89A2RUT3 159 aa9.52□□□□□ -0.89
USP53-209ENST00000514665 Q6ZTI0 123 aa9.52□□□□□ -0.89
USP53-209ENST00000514665 IGKV2D-24A0A075B6R9 120 aa9.52□□□□□ -0.89
USP53-209ENST00000514665 NEXN-AS1Q8NBZ9 246 aa9.52□□□□□ -0.89
USP53-209ENST00000514665 DEFB135Q30KP9 77 aa9.51□□□□□ -0.89
USP53-209ENST00000514665 HHLA3Q9XRX5 114 aa9.51□□□□□ -0.89
USP53-209ENST00000514665 PRR9Q5T870 116 aa9.51□□□□□ -0.89
USP53-209ENST00000514665 MIR7-3HGQ8N6C7 128 aa9.51□□□□□ -0.89
USP53-209ENST00000514665 DSCR8Q96T75 97 aa9.51□□□□□ -0.89
USP53-209ENST00000514665 Q6ZS46 218 aa9.51□□□□□ -0.89
USP53-209ENST00000514665 TCL1BO95988 128 aa9.5□□□□□ -0.89
USP53-209ENST00000514665 CDKN2A-AS1Q9UH64 79 aa9.5□□□□□ -0.89
USP53-209ENST00000514665 COX7A2LO14548 114 aa9.5□□□□□ -0.89
USP53-209ENST00000514665 Q8N6K4 173 aa9.5□□□□□ -0.89
USP53-209ENST00000514665 TM2D2Q9BX73 214 aa9.5□□□□□ -0.89
USP53-209ENST00000514665 TMEM126AQ9H061 195 aa9.5□□□□□ -0.89
USP53-209ENST00000514665 ORMDL1Q9P0S3 153 aa9.5□□□□□ -0.89
USP53-209ENST00000514665 VPS13AQ96RL7 3174 aa9.5□□□□□ -0.89
USP53-209ENST00000514665 PROK1P58294 105 aa9.5□□□□□ -0.89
USP53-209ENST00000514665 RPL32P62910 135 aaKnown RBP9.5□□□□□ -0.89
USP53-209ENST00000514665 A0A0J9YXY3 114 aa9.49□□□□□ -0.89
USP53-209ENST00000514665 LGALS9O00182 355 aa9.49□□□□□ -0.89
USP53-209ENST00000514665 IGHV3-30P01768 117 aa9.49□□□□□ -0.89
USP53-209ENST00000514665 IGHV3-33P01772 117 aa9.49□□□□□ -0.89
USP53-209ENST00000514665 ATP5G1P05496 136 aa9.49□□□□□ -0.89
USP53-209ENST00000514665 IGHV3-30-5P0DP03 117 aa9.49□□□□□ -0.89
USP53-209ENST00000514665 C2orf91Q6ZV80 131 aa9.49□□□□□ -0.89
USP53-209ENST00000514665 U3KQK5 164 aa9.49□□□□□ -0.89
USP53-209ENST00000514665 LECT2O14960 151 aa9.49□□□□□ -0.89
USP53-209ENST00000514665 MRAPQ8TCY5 172 aa9.49□□□□□ -0.89
USP53-209ENST00000514665 IGKV3D-7A0A0C4DH55 119 aa9.49□□□□□ -0.89
USP53-209ENST00000514665 URB1-AS1Q96HZ7 61 aa9.49□□□□□ -0.89
USP53-209ENST00000514665 CFAP54Q96N23 3096 aa9.49□□□□□ -0.89
USP53-209ENST00000514665 MRPL23Q16540 153 aaKnown RBP9.48□□□□□ -0.89
USP53-209ENST00000514665 NFE4Q86UQ8 179 aa9.48□□□□□ -0.89
USP53-209ENST00000514665 C4orf3Q8WVX3 66 aa9.48□□□□□ -0.89
USP53-209ENST00000514665 PRM2P04554 102 aa9.48□□□□□ -0.89
USP53-209ENST00000514665 SPART-AS1P0CW21 52 aa9.48□□□□□ -0.89
USP53-209ENST00000514665 LINC00467Q9BRT7 94 aa9.48□□□□□ -0.89
USP53-209ENST00000514665 TRBV10-2A0A0K0K1G8 114 aa9.48□□□□□ -0.89
USP53-209ENST00000514665 ZNF22P17026 224 aaPredicted RBP9.48□□□□□ -0.89
USP53-209ENST00000514665 TMEM263Q8WUH6 116 aaKnown RBP9.48□□□□□ -0.89
USP53-209ENST00000514665 DNAJC9-AS1A6NH13 148 aa9.47□□□□□ -0.89
USP53-209ENST00000514665 H0YGX0 51 aa9.47□□□□□ -0.89
USP53-209ENST00000514665 NRACQ8N912 160 aa9.47□□□□□ -0.89
USP53-209ENST00000514665 DEFB105AQ8NG35 78 aa9.47□□□□□ -0.89
USP53-209ENST00000514665 IGLV4-3A0A075B6K6 122 aa9.47□□□□□ -0.89
USP53-209ENST00000514665 M0QY20 66 aa9.47□□□□□ -0.89
USP53-209ENST00000514665 RNASE3P12724 160 aaKnown RBP9.47□□□□□ -0.89
USP53-209ENST00000514665 CAMK2N2Q96S95 79 aa9.47□□□□□ -0.89
USP53-209ENST00000514665 SS18L2Q9UHA2 77 aa9.47□□□□□ -0.89
USP53-209ENST00000514665 CPAMD8Q8IZJ3 1885 aa9.47□□□□□ -0.89
USP53-209ENST00000514665 MUC3AQ02505 3323 aa9.47□□□□□ -0.89
USP53-209ENST00000514665 Q8N976 141 aa9.47□□□□□ -0.89
USP53-209ENST00000514665 C1orf43Q9BWL3 253 aa9.47□□□□□ -0.89
USP53-209ENST00000514665 C9orf66Q5T8R8 295 aa9.46□□□□□ -0.89
USP53-209ENST00000514665 BPTFQ12830 3046 aa9.46□□□□□ -0.89
USP53-209ENST00000514665 TRBV10-1A0A0K0K1A3 114 aa9.46□□□□□ -0.89
USP53-209ENST00000514665 KLK12Q9UKR0 248 aa9.46□□□□□ -0.89
USP53-209ENST00000514665 RBX1P62877 108 aa9.46□□□□□ -0.9
USP53-209ENST00000514665 WFDC11Q8NEX6 87 aa9.46□□□□□ -0.9
USP53-209ENST00000514665 TNRC18O15417 2968 aaPredicted RBP9.46□□□□□ -0.9
USP53-209ENST00000514665 DEFB114Q30KQ6 69 aa9.45□□□□□ -0.9
USP53-209ENST00000514665 MIAQ16674 131 aa9.45□□□□□ -0.9
USP53-209ENST00000514665 FAM236AA0A1B0GUQ0 79 aa9.45□□□□□ -0.9
USP53-209ENST00000514665 FAM236BA0A1B0GV22 79 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms