RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 ZFAND2AQ8N6M9 145 aa12.44□□□□□ -0.42
PCDHA1-203ENST00000504120 A0A0J9YXY3 114 aa12.44□□□□□ -0.42
PCDHA1-203ENST00000504120 SMIM9A6NGZ8 99 aa12.44□□□□□ -0.42
PCDHA1-203ENST00000504120 KLK5Q9Y337 293 aaPredicted RBP12.44□□□□□ -0.42
PCDHA1-203ENST00000504120 CEP192Q8TEP8 1941 aa12.43□□□□□ -0.42
PCDHA1-203ENST00000504120 PDE6GP18545 87 aa12.43□□□□□ -0.42
PCDHA1-203ENST00000504120 MP68P56378 58 aa12.43□□□□□ -0.42
PCDHA1-203ENST00000504120 PLCE1Q9P212 2302 aa12.43□□□□□ -0.42
PCDHA1-203ENST00000504120 NEXN-AS1Q8NBZ9 246 aa12.43□□□□□ -0.42
PCDHA1-203ENST00000504120 C20orf173Q96LM9 149 aa12.43□□□□□ -0.42
PCDHA1-203ENST00000504120 H7C423 109 aa12.42□□□□□ -0.42
PCDHA1-203ENST00000504120 HIGD2BQ4VC39 106 aa12.42□□□□□ -0.42
PCDHA1-203ENST00000504120 LYRM9A8MSI8 78 aa12.41□□□□□ -0.42
PCDHA1-203ENST00000504120 C11orf71Q6IPW1 123 aa12.41□□□□□ -0.42
PCDHA1-203ENST00000504120 UFSP1Q6NVU6 142 aa12.41□□□□□ -0.42
PCDHA1-203ENST00000504120 COX7BP24311 80 aa12.4□□□□□ -0.42
PCDHA1-203ENST00000504120 HIST2H2BDQ6DRA6 164 aa12.4□□□□□ -0.42
PCDHA1-203ENST00000504120 G3V4G9 280 aa12.4□□□□□ -0.42
PCDHA1-203ENST00000504120 SMIM20Q8N5G0 67 aa12.4□□□□□ -0.42
PCDHA1-203ENST00000504120 TRAV26-1A0A087WT03 109 aa12.39□□□□□ -0.43
PCDHA1-203ENST00000504120 SPG11Q96JI7 2443 aa12.39□□□□□ -0.43
PCDHA1-203ENST00000504120 REG3AQ06141 175 aa12.39□□□□□ -0.43
PCDHA1-203ENST00000504120 LINC00467Q9BRT7 94 aa12.39□□□□□ -0.43
PCDHA1-203ENST00000504120 TCL1BO95988 128 aa12.39□□□□□ -0.43
PCDHA1-203ENST00000504120 SS18L2Q9UHA2 77 aa12.39□□□□□ -0.43
PCDHA1-203ENST00000504120 ALPK3Q96L96 1907 aa12.39□□□□□ -0.43
PCDHA1-203ENST00000504120 CRIP1P50238 77 aa12.39□□□□□ -0.43
PCDHA1-203ENST00000504120 C11orf45Q8TAV5 145 aa12.39□□□□□ -0.43
PCDHA1-203ENST00000504120 LINC00269Q8N2A0 174 aa12.38□□□□□ -0.43
PCDHA1-203ENST00000504120 FAM222AQ5U5X8 452 aa12.38□□□□□ -0.43
PCDHA1-203ENST00000504120 U3KQK5 164 aa12.38□□□□□ -0.43
PCDHA1-203ENST00000504120 HIVEP2P31629 2446 aa12.38□□□□□ -0.43
PCDHA1-203ENST00000504120 PTH2Q96A98 100 aa12.37□□□□□ -0.43
PCDHA1-203ENST00000504120 IGLV4-3A0A075B6K6 122 aa12.37□□□□□ -0.43
PCDHA1-203ENST00000504120 CDKN2A-AS1Q9UH64 79 aa12.36□□□□□ -0.43
PCDHA1-203ENST00000504120 TMEM223A0PJW6 202 aa12.36□□□□□ -0.43
PCDHA1-203ENST00000504120 ZNF22P17026 224 aaPredicted RBP12.36□□□□□ -0.43
PCDHA1-203ENST00000504120 M0QY20 66 aa12.36□□□□□ -0.43
PCDHA1-203ENST00000504120 PCNX3Q9H6A9 2034 aa12.36□□□□□ -0.43
PCDHA1-203ENST00000504120 C14orf177Q52M58 125 aa12.36□□□□□ -0.43
PCDHA1-203ENST00000504120 WFDC11Q8NEX6 87 aa12.35□□□□□ -0.43
PCDHA1-203ENST00000504120 LINC00643Q86TS7 51 aa12.35□□□□□ -0.43
PCDHA1-203ENST00000504120 CFAP126Q5VTH2 177 aa12.35□□□□□ -0.43
PCDHA1-203ENST00000504120 IL17DQ8TAD2 202 aa12.35□□□□□ -0.43
PCDHA1-203ENST00000504120 RNF185Q96GF1 192 aa12.35□□□□□ -0.43
PCDHA1-203ENST00000504120 YPEL4Q96NS1 127 aa12.35□□□□□ -0.43
PCDHA1-203ENST00000504120 SPANXB1Q9NS25 103 aaPredicted RBP12.35□□□□□ -0.43
PCDHA1-203ENST00000504120 CHCHD10Q8WYQ3 142 aaPredicted RBP12.34□□□□□ -0.43
PCDHA1-203ENST00000504120 Q6ZSV7 163 aa12.34□□□□□ -0.43
PCDHA1-203ENST00000504120 Q8N6K4 173 aa12.34□□□□□ -0.43
PCDHA1-203ENST00000504120 TNCP24821 2201 aa12.34□□□□□ -0.43
PCDHA1-203ENST00000504120 C14orf132Q9NPU4 83 aa12.34□□□□□ -0.43
PCDHA1-203ENST00000504120 IGLV2-11P01706 119 aa12.33□□□□□ -0.43
PCDHA1-203ENST00000504120 WFDC9Q8NEX5 89 aa12.33□□□□□ -0.44
PCDHA1-203ENST00000504120 TRBV6-4A0A1B0GX49 114 aa12.32□□□□□ -0.44
PCDHA1-203ENST00000504120 CHKB-CPT1BH3BT56 60 aa12.32□□□□□ -0.44
PCDHA1-203ENST00000504120 LRP4O75096 1905 aa12.32□□□□□ -0.44
PCDHA1-203ENST00000504120 NOTCH2Q04721 2471 aa12.32□□□□□ -0.44
PCDHA1-203ENST00000504120 TNRC6BQ9UPQ9 1833 aaKnown RBP12.32□□□□□ -0.44
PCDHA1-203ENST00000504120 IBA57-AS1B1ANH7 110 aa12.32□□□□□ -0.44
PCDHA1-203ENST00000504120 B9D2Q9BPU9 175 aa12.32□□□□□ -0.44
PCDHA1-203ENST00000504120 CUL9Q8IWT3 2517 aa12.32□□□□□ -0.44
PCDHA1-203ENST00000504120 PSMG3-AS1Q96PY0 264 aa12.31□□□□□ -0.44
PCDHA1-203ENST00000504120 IGKV2D-26A0A0A0MRZ7 120 aa12.31□□□□□ -0.44
PCDHA1-203ENST00000504120 TRBV6-5A0A0K0K1A5 114 aa12.31□□□□□ -0.44
PCDHA1-203ENST00000504120 ARHGAP21Q5T5U3 1957 aa12.31□□□□□ -0.44
PCDHA1-203ENST00000504120 TRBV27A0A0K0K1C4 114 aa12.31□□□□□ -0.44
PCDHA1-203ENST00000504120 C4orf48Q5BLP8 95 aa12.31□□□□□ -0.44
PCDHA1-203ENST00000504120 TRBV6-8A0A0A6YYG3 113 aa12.31□□□□□ -0.44
PCDHA1-203ENST00000504120 PYGO1Q9Y3Y4 419 aa12.3□□□□□ -0.44
PCDHA1-203ENST00000504120 MED12LQ86YW9 2145 aa12.3□□□□□ -0.44
PCDHA1-203ENST00000504120 MIFP14174 115 aa12.3□□□□□ -0.44
PCDHA1-203ENST00000504120 LINC00308Q8TCZ7 52 aa12.29□□□□□ -0.44
PCDHA1-203ENST00000504120 C5orf47Q569G3 176 aa12.29□□□□□ -0.44
PCDHA1-203ENST00000504120 J3KT08 172 aa12.28□□□□□ -0.44
PCDHA1-203ENST00000504120 C10orf99Q6UWK7 81 aa12.28□□□□□ -0.44
PCDHA1-203ENST00000504120 CSPG4Q6UVK1 2322 aa12.27□□□□□ -0.44
PCDHA1-203ENST00000504120 MAPKAPK5-AS1Q8N8E1 139 aa12.27□□□□□ -0.44
PCDHA1-203ENST00000504120 ZNF702PQ9H963 129 aa12.27□□□□□ -0.44
PCDHA1-203ENST00000504120 DEFB131BA0A096LNP1 70 aa12.27□□□□□ -0.44
PCDHA1-203ENST00000504120 HILS1P60008 231 aa12.27□□□□□ -0.44
PCDHA1-203ENST00000504120 CRYGDP07320 174 aa12.27□□□□□ -0.45
PCDHA1-203ENST00000504120 IGKV2-24A0A0C4DH68 120 aa12.27□□□□□ -0.45
PCDHA1-203ENST00000504120 INAFM1C9JVW0 142 aa12.26□□□□□ -0.45
PCDHA1-203ENST00000504120 BPY2O14599 106 aa12.25□□□□□ -0.45
PCDHA1-203ENST00000504120 RNASE3P12724 160 aaKnown RBP12.25□□□□□ -0.45
PCDHA1-203ENST00000504120 TRBV30A0A0K0K1B3 111 aa12.25□□□□□ -0.45
PCDHA1-203ENST00000504120 H0Y9J4 135 aa12.25□□□□□ -0.45
PCDHA1-203ENST00000504120 NRACQ8N912 160 aa12.25□□□□□ -0.45
PCDHA1-203ENST00000504120 KLLNB2CW77 178 aa12.24□□□□□ -0.45
PCDHA1-203ENST00000504120 SPATA25Q9BR10 227 aa12.24□□□□□ -0.45
PCDHA1-203ENST00000504120 TEX49A0A1B0GTD5 131 aa12.24□□□□□ -0.45
PCDHA1-203ENST00000504120 PROK1P58294 105 aa12.24□□□□□ -0.45
PCDHA1-203ENST00000504120 UPK3BQ9BT76 320 aa12.24□□□□□ -0.45
PCDHA1-203ENST00000504120 HIGD2AQ9BW72 106 aa12.24□□□□□ -0.45
PCDHA1-203ENST00000504120 IGLV1-40P01703 118 aa12.23□□□□□ -0.45
PCDHA1-203ENST00000504120 TP73-AS1Q9UF72 201 aa12.23□□□□□ -0.45
PCDHA1-203ENST00000504120 TIMM17BO60830 172 aa12.23□□□□□ -0.45
PCDHA1-203ENST00000504120 TSHBP01222 138 aa12.23□□□□□ -0.45
PCDHA1-203ENST00000504120 SHISA2Q6UWI4 295 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms