RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 ATP6V0E2Q8NHE4 81 aa-0.17□□□□□ -2.44
SCN1A-206ENST00000491429 HIGD1AQ9Y241 93 aa-0.17□□□□□ -2.44
SCN1A-206ENST00000491429 HELZP42694 1942 aaKnown RBP-0.17□□□□□ -2.44
SCN1A-206ENST00000491429 VPS13AQ96RL7 3174 aa-0.17□□□□□ -2.44
SCN1A-206ENST00000491429 ANK3Q12955 4377 aaKnown RBP-0.17□□□□□ -2.44
SCN1A-206ENST00000491429 CDK13Q14004 1512 aaKnown RBP-0.18□□□□□ -2.44
SCN1A-206ENST00000491429 DNAH9Q9NYC9 4486 aa-0.18□□□□□ -2.44
SCN1A-206ENST00000491429 CMYA5Q8N3K9 4069 aa-0.18□□□□□ -2.44
SCN1A-206ENST00000491429 AKAP9Q99996 3911 aa-0.18□□□□□ -2.44
SCN1A-206ENST00000491429 H0YJX3 145 aa-0.18□□□□□ -2.44
SCN1A-206ENST00000491429 C4orf33Q8N1A6 199 aa-0.18□□□□□ -2.44
SCN1A-206ENST00000491429 SMIM11BQ8TCY0 68 aa-0.18□□□□□ -2.44
SCN1A-206ENST00000491429 TNS1Q9HBL0 1735 aaKnown RBP-0.18□□□□□ -2.44
SCN1A-206ENST00000491429 SYNJ1O43426 1573 aa-0.19□□□□□ -2.44
SCN1A-206ENST00000491429 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.19□□□□□ -2.44
SCN1A-206ENST00000491429 FAT2Q9NYQ8 4349 aa-0.19□□□□□ -2.44
SCN1A-206ENST00000491429 A0A087WTM6 91 aa-0.19□□□□□ -2.44
SCN1A-206ENST00000491429 GNG14A0A1W2PPG7 69 aa-0.19□□□□□ -2.44
SCN1A-206ENST00000491429 J3QLW9 94 aa-0.19□□□□□ -2.44
SCN1A-206ENST00000491429 APODP05090 189 aa-0.19□□□□□ -2.44
SCN1A-206ENST00000491429 SCTP09683 121 aa-0.19□□□□□ -2.44
SCN1A-206ENST00000491429 CCL3L1P16619 93 aa-0.19□□□□□ -2.44
SCN1A-206ENST00000491429 ASIPP42127 132 aa-0.19□□□□□ -2.44
SCN1A-206ENST00000491429 NPC2P61916 151 aa-0.19□□□□□ -2.44
SCN1A-206ENST00000491429 C20orf197Q8N268 126 aa-0.19□□□□□ -2.44
SCN1A-206ENST00000491429 MAGOHBQ96A72 148 aaKnown RBP-0.19□□□□□ -2.44
SCN1A-206ENST00000491429 ERG28Q9UKR5 140 aa-0.19□□□□□ -2.44
SCN1A-206ENST00000491429 LSM2Q9Y333 95 aaKnown RBP-0.19□□□□□ -2.44
SCN1A-206ENST00000491429 CHD7Q9P2D1 2997 aa-0.19□□□□□ -2.44
SCN1A-206ENST00000491429 MUC17Q685J3 4493 aa-0.19□□□□□ -2.44
SCN1A-206ENST00000491429 ATMQ13315 3056 aa-0.2□□□□□ -2.44
SCN1A-206ENST00000491429 YPEL1O60688 119 aa-0.2□□□□□ -2.44
SCN1A-206ENST00000491429 IFITM1P13164 125 aa-0.2□□□□□ -2.44
SCN1A-206ENST00000491429 SSBP1Q04837 148 aaKnown RBP-0.2□□□□□ -2.44
SCN1A-206ENST00000491429 ATP11AUNQ6ZP68 121 aa-0.2□□□□□ -2.44
SCN1A-206ENST00000491429 NDUFA11Q86Y39 141 aa-0.2□□□□□ -2.44
SCN1A-206ENST00000491429 SPRR2FQ96RM1 72 aa-0.2□□□□□ -2.44
SCN1A-206ENST00000491429 MRPL40Q9NQ50 206 aaKnown RBP-0.2□□□□□ -2.44
SCN1A-206ENST00000491429 TMEM242Q9NWH2 141 aa-0.2□□□□□ -2.44
SCN1A-206ENST00000491429 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.2□□□□□ -2.44
SCN1A-206ENST00000491429 UNC13BO14795 1591 aa-0.2□□□□□ -2.44
SCN1A-206ENST00000491429 SMARCA2P51531 1590 aa-0.2□□□□□ -2.44
SCN1A-206ENST00000491429 MAP2P11137 1827 aaKnown RBP-0.2□□□□□ -2.44
SCN1A-206ENST00000491429 TRIOO75962 3097 aa-0.2□□□□□ -2.44
SCN1A-206ENST00000491429 TET3O43151 1660 aa-0.21□□□□□ -2.44
SCN1A-206ENST00000491429 MED13LQ71F56 2210 aa-0.21□□□□□ -2.44
SCN1A-206ENST00000491429 PTPRMP28827 1452 aa-0.21□□□□□ -2.44
SCN1A-206ENST00000491429 DNAH6Q9C0G6 4158 aa-0.21□□□□□ -2.44
SCN1A-206ENST00000491429 TRBV7-1A0A0A6YYK4 115 aa-0.21□□□□□ -2.44
SCN1A-206ENST00000491429 C10orf142B7Z368 130 aa-0.21□□□□□ -2.44
SCN1A-206ENST00000491429 NBEAP1P0C6P0 100 aa-0.21□□□□□ -2.44
SCN1A-206ENST00000491429 ACYP2P14621 99 aa-0.21□□□□□ -2.44
SCN1A-206ENST00000491429 CCDC153Q494R4 210 aa-0.21□□□□□ -2.44
SCN1A-206ENST00000491429 FAM74A4Q5TZK3 123 aa-0.21□□□□□ -2.44
SCN1A-206ENST00000491429 SLC48A1Q6P1K1 146 aa-0.21□□□□□ -2.44
SCN1A-206ENST00000491429 COX7B2Q8TF08 81 aa-0.21□□□□□ -2.44
SCN1A-206ENST00000491429 WNK2Q9Y3S1 2297 aa-0.21□□□□□ -2.44
SCN1A-206ENST00000491429 PPRC1Q5VV67 1664 aaKnown RBP-0.21□□□□□ -2.44
SCN1A-206ENST00000491429 SPTBN1Q01082 2364 aaKnown RBP-0.21□□□□□ -2.44
SCN1A-206ENST00000491429 DMDP11532 3685 aa-0.22□□□□□ -2.44
SCN1A-206ENST00000491429 CASZ1Q86V15 1759 aa-0.22□□□□□ -2.44
SCN1A-206ENST00000491429 UHRF1BP1LA0JNW5 1464 aa-0.22□□□□□ -2.44
SCN1A-206ENST00000491429 CACNA1CQ13936 2221 aa-0.22□□□□□ -2.44
SCN1A-206ENST00000491429 DOPEY2Q9Y3R5 2298 aa-0.22□□□□□ -2.44
SCN1A-206ENST00000491429 PTPRQQ9UMZ3 2332 aa-0.22□□□□□ -2.44
SCN1A-206ENST00000491429 TRAV12-3A0A0B4J271 114 aa-0.22□□□□□ -2.44
SCN1A-206ENST00000491429 SPCS2Q15005 226 aa-0.22□□□□□ -2.44
SCN1A-206ENST00000491429 Q96NJ1 140 aa-0.22□□□□□ -2.44
SCN1A-206ENST00000491429 V9GYV3 84 aa-0.22□□□□□ -2.44
SCN1A-206ENST00000491429 VIRMAQ69YN4 1812 aaKnown RBP-0.22□□□□□ -2.45
SCN1A-206ENST00000491429 RAPGEF6Q8TEU7 1601 aa-0.23□□□□□ -2.45
SCN1A-206ENST00000491429 CCDC179H3BU77 68 aa-0.23□□□□□ -2.45
SCN1A-206ENST00000491429 M0R2P5 195 aa-0.23□□□□□ -2.45
SCN1A-206ENST00000491429 SSC5DA1L4H1 1573 aa-0.23□□□□□ -2.45
SCN1A-206ENST00000491429 PKDREJQ9NTG1 2253 aa-0.24□□□□□ -2.45
SCN1A-206ENST00000491429 DBIP07108 87 aaKnown RBP-0.24□□□□□ -2.45
SCN1A-206ENST00000491429 Q5VSD8 79 aa-0.24□□□□□ -2.45
SCN1A-206ENST00000491429 Q6ZRX8 168 aa-0.24□□□□□ -2.45
SCN1A-206ENST00000491429 LINC00846Q9NV44 126 aa-0.24□□□□□ -2.45
SCN1A-206ENST00000491429 SPANXCQ9NY87 97 aa-0.24□□□□□ -2.45
SCN1A-206ENST00000491429 F5P12259 2224 aa-0.24□□□□□ -2.45
SCN1A-206ENST00000491429 ERCC6Q03468 1493 aa-0.24□□□□□ -2.45
SCN1A-206ENST00000491429 CICQ96RK0 1608 aaPredicted RBP-0.24□□□□□ -2.45
SCN1A-206ENST00000491429 XIRP1Q702N8 1843 aaKnown RBP-0.24□□□□□ -2.45
SCN1A-206ENST00000491429 TRGV1A0A0A0MS02 117 aa-0.25□□□□□ -2.45
SCN1A-206ENST00000491429 GCHFRP30047 84 aa-0.25□□□□□ -2.45
SCN1A-206ENST00000491429 NCS1P62166 190 aa-0.25□□□□□ -2.45
SCN1A-206ENST00000491429 KRTAP19-7Q3SYF9 63 aa-0.25□□□□□ -2.45
SCN1A-206ENST00000491429 LINC01545Q5VT33 79 aa-0.25□□□□□ -2.45
SCN1A-206ENST00000491429 TAC4Q86UU9 113 aa-0.25□□□□□ -2.45
SCN1A-206ENST00000491429 NDUFA12Q9UI09 145 aa-0.25□□□□□ -2.45
SCN1A-206ENST00000491429 TJP1Q07157 1748 aa-0.25□□□□□ -2.45
SCN1A-206ENST00000491429 KNL1Q8NG31 2342 aa-0.26□□□□□ -2.45
SCN1A-206ENST00000491429 COL4A6Q14031 1691 aa-0.26□□□□□ -2.45
SCN1A-206ENST00000491429 SLIT1O75093 1534 aa-0.26□□□□□ -2.45
SCN1A-206ENST00000491429 DNAH11Q96DT5 4516 aa-0.26□□□□□ -2.45
SCN1A-206ENST00000491429 DNAH17Q9UFH2 4485 aa-0.26□□□□□ -2.45
SCN1A-206ENST00000491429 ARAP1Q96P48 1450 aa-0.26□□□□□ -2.45
SCN1A-206ENST00000491429 TMEM14DPA8MWL7 114 aa-0.26□□□□□ -2.45
SCN1A-206ENST00000491429 M0R129 80 aa-0.26□□□□□ -2.45
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms