RNA–Protein interactions for RNA: ENST00000489241.1

XRN1-213, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-213ENST00000489241 PSME4Q14997 1843 aa0.7□□□□□ -2.3
XRN1-213ENST00000489241 CPSF1Q10570 1443 aaKnown RBP0.7□□□□□ -2.3
XRN1-213ENST00000489241 MYOM2P54296 1465 aa0.69□□□□□ -2.3
XRN1-213ENST00000489241 GOLGA3Q08378 1498 aa0.69□□□□□ -2.3
XRN1-213ENST00000489241 AHNAK2Q8IVF2 5795 aa0.69□□□□□ -2.3
XRN1-213ENST00000489241 C20orf202A1L168 122 aa0.69□□□□□ -2.3
XRN1-213ENST00000489241 SSSCA1O60232 199 aa0.69□□□□□ -2.3
XRN1-213ENST00000489241 KRTAP2-3P0C7H8 128 aa0.69□□□□□ -2.3
XRN1-213ENST00000489241 S100PP25815 95 aa0.69□□□□□ -2.3
XRN1-213ENST00000489241 CCL18P55774 89 aa0.69□□□□□ -2.3
XRN1-213ENST00000489241 GTF2H5Q6ZYL4 71 aa0.69□□□□□ -2.3
XRN1-213ENST00000489241 C5orf38Q86SI9 138 aa0.69□□□□□ -2.3
XRN1-213ENST00000489241 BAGE3Q86Y29 109 aa0.69□□□□□ -2.3
XRN1-213ENST00000489241 KRTAP2-4Q9BYR9 128 aa0.69□□□□□ -2.3
XRN1-213ENST00000489241 KRTAP2-1Q9BYU5 128 aa0.69□□□□□ -2.3
XRN1-213ENST00000489241 PROK2Q9HC23 129 aa0.69□□□□□ -2.3
XRN1-213ENST00000489241 IER3IP1Q9Y5U9 82 aa0.69□□□□□ -2.3
XRN1-213ENST00000489241 R4GMQ9 66 aa0.69□□□□□ -2.3
XRN1-213ENST00000489241 SIPA1L3O60292 1781 aaPredicted RBP0.69□□□□□ -2.3
XRN1-213ENST00000489241 PPIP5K1Q6PFW1 1433 aa0.69□□□□□ -2.3
XRN1-213ENST00000489241 BDP1A6H8Y1 2624 aa0.68□□□□□ -2.3
XRN1-213ENST00000489241 GCHFRP30047 84 aa0.68□□□□□ -2.3
XRN1-213ENST00000489241 SPAG11BQ08648 103 aa0.68□□□□□ -2.3
XRN1-213ENST00000489241 PRDM2Q13029 1718 aa0.68□□□□□ -2.3
XRN1-213ENST00000489241 Q5VV11 94 aa0.68□□□□□ -2.3
XRN1-213ENST00000489241 SPAG11AQ6PDA7 123 aa0.68□□□□□ -2.3
XRN1-213ENST00000489241 COMMD6Q7Z4G1 85 aa0.68□□□□□ -2.3
XRN1-213ENST00000489241 MYOZ3Q8TDC0 251 aa0.68□□□□□ -2.3
XRN1-213ENST00000489241 TSLPQ969D9 159 aa0.68□□□□□ -2.3
XRN1-213ENST00000489241 CYP4F30PQ9H0H9 118 aa0.68□□□□□ -2.3
XRN1-213ENST00000489241 ROBO1Q9Y6N7 1651 aa0.68□□□□□ -2.3
XRN1-213ENST00000489241 APCP25054 2843 aa0.67□□□□□ -2.3
XRN1-213ENST00000489241 AHNAKQ09666 5890 aaKnown RBP0.67□□□□□ -2.3
XRN1-213ENST00000489241 G3V318 75 aa0.67□□□□□ -2.3
XRN1-213ENST00000489241 NMBP08949 121 aa0.67□□□□□ -2.3
XRN1-213ENST00000489241 IFITM1P13164 125 aa0.67□□□□□ -2.3
XRN1-213ENST00000489241 NPVFQ9HCQ7 196 aa0.67□□□□□ -2.3
XRN1-213ENST00000489241 KCPQ6ZWJ8 1503 aa0.67□□□□□ -2.3
XRN1-213ENST00000489241 MRC1P22897 1456 aa0.67□□□□□ -2.3
XRN1-213ENST00000489241 CADP27708 2225 aa0.66□□□□□ -2.3
XRN1-213ENST00000489241 LAMC3Q9Y6N6 1575 aa0.66□□□□□ -2.3
XRN1-213ENST00000489241 CTXND1A0A1B0GTU2 59 aa0.66□□□□□ -2.3
XRN1-213ENST00000489241 UBE2L5PA0A1B0GUS4 154 aa0.66□□□□□ -2.3
XRN1-213ENST00000489241 UBE2L3P68036 154 aaKnown RBP0.66□□□□□ -2.3
XRN1-213ENST00000489241 SMR3AQ99954 134 aa0.66□□□□□ -2.3
XRN1-213ENST00000489241 DPH3P1Q9H4G8 78 aa0.66□□□□□ -2.3
XRN1-213ENST00000489241 LINC00474Q9P2X8 69 aa0.66□□□□□ -2.3
XRN1-213ENST00000489241 LENEPQ9Y5L5 61 aa0.66□□□□□ -2.3
XRN1-213ENST00000489241 V9GYH0 126 aa0.66□□□□□ -2.3
XRN1-213ENST00000489241 IFT172Q9UG01 1749 aa0.66□□□□□ -2.3
XRN1-213ENST00000489241 FAM135AQ9P2D6 1515 aa0.65□□□□□ -2.31
XRN1-213ENST00000489241 TRBV7-3A0A075B6L6 115 aa0.65□□□□□ -2.31
XRN1-213ENST00000489241 M0R135 149 aa0.65□□□□□ -2.31
XRN1-213ENST00000489241 CGREF1Q99674 301 aa0.65□□□□□ -2.31
XRN1-213ENST00000489241 MGST2Q99735 147 aa0.65□□□□□ -2.31
XRN1-213ENST00000489241 TCEAL7Q9BRU2 100 aa0.65□□□□□ -2.31
XRN1-213ENST00000489241 DYNLRB1Q9NP97 96 aa0.65□□□□□ -2.31
XRN1-213ENST00000489241 CACNA1HO95180 2353 aa0.64□□□□□ -2.31
XRN1-213ENST00000489241 ATP6V1G2-DDX39BF2Z307 99 aa0.64□□□□□ -2.31
XRN1-213ENST00000489241 SPINK8P0C7L1 97 aa0.64□□□□□ -2.31
XRN1-213ENST00000489241 ATP5EP56381 51 aaPredicted RBP0.64□□□□□ -2.31
XRN1-213ENST00000489241 GNG11P61952 73 aa0.64□□□□□ -2.31
XRN1-213ENST00000489241 DCDP81605 110 aaKnown RBP0.64□□□□□ -2.31
XRN1-213ENST00000489241 CFAP126Q5VTH2 177 aa0.64□□□□□ -2.31
XRN1-213ENST00000489241 C12orf57Q99622 126 aa0.64□□□□□ -2.31
XRN1-213ENST00000489241 PZPP20742 1482 aa0.64□□□□□ -2.31
XRN1-213ENST00000489241 RIMS1Q86UR5 1692 aaKnown RBP0.64□□□□□ -2.31
XRN1-213ENST00000489241 SNCAP37840 140 aa0.63□□□□□ -2.31
XRN1-213ENST00000489241 HSD52Q0P140 79 aa0.63□□□□□ -2.31
XRN1-213ENST00000489241 NDUFA4L2Q9NRX3 87 aa0.63□□□□□ -2.31
XRN1-213ENST00000489241 TENM3Q9P273 2699 aa0.63□□□□□ -2.31
XRN1-213ENST00000489241 ZNF236Q9UL36 1845 aa0.63□□□□□ -2.31
XRN1-213ENST00000489241 NRKQ7Z2Y5 1582 aa0.62□□□□□ -2.31
XRN1-213ENST00000489241 TTC28Q96AY4 2481 aa0.62□□□□□ -2.31
XRN1-213ENST00000489241 PIEZO1Q92508 2521 aa0.62□□□□□ -2.31
XRN1-213ENST00000489241 CHKB-CPT1BH3BT56 60 aa0.62□□□□□ -2.31
XRN1-213ENST00000489241 UBE2DNLQ8IWF7 75 aa0.62□□□□□ -2.31
XRN1-213ENST00000489241 SMIM4Q8WVI0 70 aa0.62□□□□□ -2.31
XRN1-213ENST00000489241 C14orf144Q96I85 54 aa0.62□□□□□ -2.31
XRN1-213ENST00000489241 MAPKBP1O60336 1514 aa0.61□□□□□ -2.31
XRN1-213ENST00000489241 F8VRH5 84 aa0.61□□□□□ -2.31
XRN1-213ENST00000489241 TMEM170BQ5T4T1 132 aa0.61□□□□□ -2.31
XRN1-213ENST00000489241 BAGE2Q86Y30 109 aa0.61□□□□□ -2.31
XRN1-213ENST00000489241 WNK3Q9BYP7 1800 aa0.61□□□□□ -2.31
XRN1-213ENST00000489241 UNC13BO14795 1591 aa0.61□□□□□ -2.31
XRN1-213ENST00000489241 PLXNB2O15031 1838 aa0.6□□□□□ -2.31
XRN1-213ENST00000489241 LOC285095A0A1B0GVY8 99 aa0.6□□□□□ -2.31
XRN1-213ENST00000489241 IGLC7A0M8Q6 106 aa0.6□□□□□ -2.31
XRN1-213ENST00000489241 TMEM218A2RU14 115 aa0.6□□□□□ -2.31
XRN1-213ENST00000489241 HMGN4O00479 90 aa0.6□□□□□ -2.31
XRN1-213ENST00000489241 RBP2P50120 134 aa0.6□□□□□ -2.31
XRN1-213ENST00000489241 COX6A2Q02221 97 aa0.6□□□□□ -2.31
XRN1-213ENST00000489241 MANBALQ9NQG1 85 aa0.6□□□□□ -2.31
XRN1-213ENST00000489241 UQCR10Q9UDW1 63 aa0.6□□□□□ -2.31
XRN1-213ENST00000489241 C10orf71Q711Q0 1435 aa0.6□□□□□ -2.31
XRN1-213ENST00000489241 SCAPERQ9BY12 1400 aa0.6□□□□□ -2.31
XRN1-213ENST00000489241 NAP1L6A6NFF2 107 aa0.59□□□□□ -2.31
XRN1-213ENST00000489241 ZNF815PA8K554 130 aa0.59□□□□□ -2.31
XRN1-213ENST00000489241 PIN1P1O15428 100 aa0.59□□□□□ -2.31
XRN1-213ENST00000489241 APOC3P02656 99 aa0.59□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms