RNA–Protein interactions for RNA: ENST00000489241.1

XRN1-213, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-213ENST00000489241 AEBP2Q6ZN18 517 aaPredicted RBP24.44■■□□□ 1.5
XRN1-213ENST00000489241 CHIC1Q5VXU3 224 aa23.47■■□□□ 1.35
XRN1-213ENST00000489241 SENP3Q9H4L4 574 aaPredicted RBP20.87■□□□□ 0.93
XRN1-213ENST00000489241 PHF23Q9BUL5 403 aaPredicted RBP20.58■□□□□ 0.89
XRN1-213ENST00000489241 FOXD1Q16676 465 aa19.38■□□□□ 0.69
XRN1-213ENST00000489241 PLPPR3Q6T4P5 718 aa18.87■□□□□ 0.61
XRN1-213ENST00000489241 PPP6R1Q9UPN7 881 aa18.26■□□□□ 0.51
XRN1-213ENST00000489241 ADRA2BP18089 450 aa18.23■□□□□ 0.51
XRN1-213ENST00000489241 PIAS4Q8N2W9 510 aaPredicted RBP18.2■□□□□ 0.5
XRN1-213ENST00000489241 MSH5O43196 834 aa18.1■□□□□ 0.49
XRN1-213ENST00000489241 POTEDQ86YR6 584 aa17.24■□□□□ 0.35
XRN1-213ENST00000489241 SCAF1Q9H7N4 1312 aaKnown RBP16.73■□□□□ 0.27
XRN1-213ENST00000489241 MAPK8IP2Q13387 824 aaPredicted RBP16.66■□□□□ 0.26
XRN1-213ENST00000489241 DMRT2Q9Y5R5 561 aa16.57■□□□□ 0.24
XRN1-213ENST00000489241 PPP4R3CPQ6ZMV5 832 aa16.54■□□□□ 0.24
XRN1-213ENST00000489241 CNKSR2Q8WXI2 1034 aa16.2■□□□□ 0.18
XRN1-213ENST00000489241 HOXD11P31277 338 aaPredicted RBP16.05■□□□□ 0.16
XRN1-213ENST00000489241 NCBP3Q53F19 620 aaKnown RBP16.01■□□□□ 0.15
XRN1-213ENST00000489241 RNF216Q9NWF9 866 aaPredicted RBP16■□□□□ 0.15
XRN1-213ENST00000489241 DCAF8L1A6NGE4 600 aa15.86■□□□□ 0.13
XRN1-213ENST00000489241 NPM3O75607 178 aaKnown RBP15.75■□□□□ 0.11
XRN1-213ENST00000489241 KCNA4P22459 653 aa15.64■□□□□ 0.09
XRN1-213ENST00000489241 DNAJC5BQ9UF47 199 aa15.49■□□□□ 0.07
XRN1-213ENST00000489241 RNF39Q9H2S5 420 aa15.44■□□□□ 0.06
XRN1-213ENST00000489241 CACNB1Q02641 598 aaPredicted RBP15.36■□□□□ 0.05
XRN1-213ENST00000489241 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.29■□□□□ 0.042e-6■□□□□ 8.7
XRN1-213ENST00000489241 C1QBPQ07021 282 aaKnown RBP15.24■□□□□ 0.03
XRN1-213ENST00000489241 U3KPZ7 1027 aaPredicted RBP15□□□□□ -0.01
XRN1-213ENST00000489241 SLC4A2P04920 1241 aa14.97□□□□□ -0.01
XRN1-213ENST00000489241 SLC4A1APQ9BWU0 796 aaKnown RBP14.83□□□□□ -0.04
XRN1-213ENST00000489241 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.69□□□□□ -0.06
XRN1-213ENST00000489241 HNRNPUL2Q1KMD3 747 aaKnown RBP14.69□□□□□ -0.06
XRN1-213ENST00000489241 SPINK5Q9NQ38 1064 aaPredicted RBP14.69□□□□□ -0.06
XRN1-213ENST00000489241 CAPN15O75808 1086 aa14.67□□□□□ -0.06
XRN1-213ENST00000489241 APLP2Q06481 763 aa14.65□□□□□ -0.06
XRN1-213ENST00000489241 SAMD1Q6SPF0 538 aaPredicted RBP14.61□□□□□ -0.07
XRN1-213ENST00000489241 MYCNP04198 464 aaPredicted RBP14.6□□□□□ -0.07
XRN1-213ENST00000489241 FOXD4L1Q9NU39 408 aa14.56□□□□□ -0.08
XRN1-213ENST00000489241 DSG3P32926 999 aa14.53□□□□□ -0.08
XRN1-213ENST00000489241 ZNF219Q9P2Y4 722 aaPredicted RBP14.51□□□□□ -0.09
XRN1-213ENST00000489241 TRHP20396 242 aaPredicted RBP14.48□□□□□ -0.09
XRN1-213ENST00000489241 ZBTB22O15209 634 aa14.37□□□□□ -0.11
XRN1-213ENST00000489241 ABCB7O75027 752 aa14.34□□□□□ -0.11
XRN1-213ENST00000489241 ATF5Q9Y2D1 282 aaPredicted RBP14.17□□□□□ -0.14
XRN1-213ENST00000489241 POLA2Q14181 598 aa14.14□□□□□ -0.15
XRN1-213ENST00000489241 ATXN8OSP0DMR3 200 aa14.09□□□□□ -0.15
XRN1-213ENST00000489241 ZBTB12Q9Y330 459 aaPredicted RBP13.93□□□□□ -0.18
XRN1-213ENST00000489241 CSRNP3Q8WYN3 585 aa13.91□□□□□ -0.18
XRN1-213ENST00000489241 RBM42Q9BTD8 480 aaKnown RBP13.91□□□□□ -0.18
XRN1-213ENST00000489241 EHMT2Q96KQ7 1210 aa13.87□□□□□ -0.19
XRN1-213ENST00000489241 OSCARQ8IYS5 282 aa13.7□□□□□ -0.22
XRN1-213ENST00000489241 FBLN2P98095 1184 aa13.66□□□□□ -0.22
XRN1-213ENST00000489241 AKT1S1Q96B36 256 aa13.61□□□□□ -0.23
XRN1-213ENST00000489241 MKRN4PQ13434 485 aaPredicted RBP13.56□□□□□ -0.24
XRN1-213ENST00000489241 POTEHQ6S545 545 aa13.56□□□□□ -0.24
XRN1-213ENST00000489241 SPDYE2BA6NHP3 402 aa13.5□□□□□ -0.25
XRN1-213ENST00000489241 SPDYE6P0CI01 402 aa13.5□□□□□ -0.25
XRN1-213ENST00000489241 SPDYE2Q495Y8 402 aa13.5□□□□□ -0.25
XRN1-213ENST00000489241 CHRDL2Q6WN34 429 aa13.48□□□□□ -0.25
XRN1-213ENST00000489241 REM2Q8IYK8 340 aaPredicted RBP13.45□□□□□ -0.26
XRN1-213ENST00000489241 ZNF692Q9BU19 519 aaPredicted RBP13.34□□□□□ -0.27
XRN1-213ENST00000489241 SSUH2Q9Y2M2 353 aa13.34□□□□□ -0.27
XRN1-213ENST00000489241 PITPNM1O00562 1244 aa13.32□□□□□ -0.28
XRN1-213ENST00000489241 SPDYE1Q8NFV5 336 aaPredicted RBP13.21□□□□□ -0.29
XRN1-213ENST00000489241 PIP4P2Q8N4L2 257 aa13.2□□□□□ -0.3
XRN1-213ENST00000489241 FXR2P51116 673 aaKnown RBP eCLIP13.16□□□□□ -0.3
XRN1-213ENST00000489241 PABPN1Q86U42 306 aaKnown RBP eCLIP13.16□□□□□ -0.3
XRN1-213ENST00000489241 CLEC11AQ9Y240 323 aa13.14□□□□□ -0.31
XRN1-213ENST00000489241 SPDYE4A6NLX3 237 aa13.05□□□□□ -0.32
XRN1-213ENST00000489241 PRKAR2AP13861 404 aaKnown RBP12.98□□□□□ -0.33
XRN1-213ENST00000489241 PRR29P0C7W0 189 aa12.97□□□□□ -0.33
XRN1-213ENST00000489241 HAX1O00165 279 aa12.88□□□□□ -0.35
XRN1-213ENST00000489241 STAG3Q9UJ98 1225 aa12.88□□□□□ -0.35
XRN1-213ENST00000489241 CHADLQ6NUI6 762 aa12.85□□□□□ -0.35
XRN1-213ENST00000489241 SP7Q8TDD2 431 aaPredicted RBP12.83□□□□□ -0.36
XRN1-213ENST00000489241 PROM2Q8N271 834 aa12.78□□□□□ -0.36
XRN1-213ENST00000489241 C19orf67A6NJJ6 358 aa12.73□□□□□ -0.37
XRN1-213ENST00000489241 FARP1Q9Y4F1 1045 aaPredicted RBP12.72□□□□□ -0.37
XRN1-213ENST00000489241 EVX2Q03828 476 aa12.7□□□□□ -0.38
XRN1-213ENST00000489241 CREBZFQ9NS37 354 aa12.69□□□□□ -0.38
XRN1-213ENST00000489241 FKBP8Q14318 412 aa12.62□□□□□ -0.39
XRN1-213ENST00000489241 CD44P16070 742 aaKnown RBP12.59□□□□□ -0.39
XRN1-213ENST00000489241 MNX1P50219 401 aaPredicted RBP12.5□□□□□ -0.41
XRN1-213ENST00000489241 NPM1P06748 294 aaKnown RBP eCLIP12.49□□□□□ -0.41
XRN1-213ENST00000489241 GABBR2O75899 941 aa12.47□□□□□ -0.41
XRN1-213ENST00000489241 PLEKHG5O94827 1062 aa12.43□□□□□ -0.42
XRN1-213ENST00000489241 ZRANB1Q9UGI0 708 aa12.43□□□□□ -0.42
XRN1-213ENST00000489241 ZNF579Q8NAF0 562 aaKnown RBP12.42□□□□□ -0.42
XRN1-213ENST00000489241 PAK3O75914 559 aaPredicted RBP12.41□□□□□ -0.42
XRN1-213ENST00000489241 CLCN6P51797 869 aa12.4□□□□□ -0.42
XRN1-213ENST00000489241 MIER1Q8N108 512 aa12.4□□□□□ -0.42
XRN1-213ENST00000489241 PLCD3Q8N3E9 789 aa12.36□□□□□ -0.43
XRN1-213ENST00000489241 FBXO3Q9UK99 471 aa12.33□□□□□ -0.44
XRN1-213ENST00000489241 ZBTB47Q9UFB7 747 aaPredicted RBP12.29□□□□□ -0.44
XRN1-213ENST00000489241 PHF12Q96QT6 1004 aa12.28□□□□□ -0.44
XRN1-213ENST00000489241 TSPYL2Q9H2G4 693 aaPredicted RBP12.24□□□□□ -0.45
XRN1-213ENST00000489241 GALR2O43603 387 aaPredicted RBP12.22□□□□□ -0.45
XRN1-213ENST00000489241 RASEFQ8IZ41 740 aa12.21□□□□□ -0.45
XRN1-213ENST00000489241 DCBLD2Q96PD2 775 aa12.2□□□□□ -0.46
XRN1-213ENST00000489241 CCDC61Q9Y6R9 512 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 154.8 ms