RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	SCN3B	Q9NY72	215 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	CCDC167	Q9P0B6	97 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	CACFD1	Q9UGQ2	172 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	ERG28	Q9UKR5	140 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	MAP1B	P46821	2468 aa	Known RBP	0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	FAT2	Q9NYQ8	4349 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	USP34	Q70CQ2	3546 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	PCNX1	Q96RV3	2341 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	EPRS	P07814	1512 aa	Known RBP	0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	ABCC2	Q92887	1545 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	RELN	P78509	3460 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	NCOR1	O75376	2440 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	EP300	Q09472	2414 aa	Predicted RBP	0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	CEP250	Q9BV73	2442 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	ANKRD36B	Q8N2N9	1353 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	ANKRD30A	Q9BXX3	1397 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	COL12A1	Q99715	3063 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	EYS	Q5T1H1	3165 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	LRRK2	Q5S007	2527 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	CNOT1	A5YKK6	2376 aa	Known RBP	0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	FAM186A	A6NE01	2351 aa		0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	MAGI1	Q96QZ7	1491 aa	Predicted RBP	0.16	□□□□□ -2.38
PTCD3-209	ENST00000472044	RIF1	Q5UIP0	2472 aa	Known RBP	0.15	□□□□□ -2.38
PTCD3-209	ENST00000472044	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	0.15	□□□□□ -2.38	5e-7	■■□□□ 13.8
PTCD3-209	ENST00000472044	BOD1L1	Q8NFC6	3051 aa		0.15	□□□□□ -2.38
PTCD3-209	ENST00000472044	MUC3A	Q02505	3323 aa		0.15	□□□□□ -2.38
PTCD3-209	ENST00000472044	CELSR3	Q9NYQ7	3312 aa		0.15	□□□□□ -2.38
PTCD3-209	ENST00000472044	ZFHX4	Q86UP3	3567 aa		0.15	□□□□□ -2.38
PTCD3-209	ENST00000472044	ALMS1	Q8TCU4	4167 aa		0.15	□□□□□ -2.38
PTCD3-209	ENST00000472044	EEA1	Q15075	1411 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	MYOM3	Q5VTT5	1437 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	UACA	Q9BZF9	1416 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	CACNA1A	O00555	2505 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	FASN	P49327	2511 aa	Known RBP	0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	URB1	O60287	2271 aa	Known RBP	0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	SLIT1	O75093	1534 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	MAP3K1	Q13233	1512 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	F8	P00451	2351 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	C2CD3	Q4AC94	2353 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	PKHD1	P08F94	4074 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	TRBV20-1	A0A075B6N2	111 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	TRAV12-2	A0A075B6T6	113 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	TRAV17	A0A0B4J275	112 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	LOC285095	A0A1B0GVY8	99 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	TCRBV3S1	A0A5B6	114 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	CPSF4L	A6NMK7	179 aa	Known RBP	0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	ATP6V1G2-DDX39B	F2Z307	99 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044		J3QR89	54 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044		M0R2P5	195 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	PIN1P1	O15428	100 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	SSSCA1	O60232	199 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	GYPA	P02724	150 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	APOD	P05090	189 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	LINC00032	P0C843	101 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	SNCA	P37840	140 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	ASIP	P42127	132 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	EMX2	Q04743	252 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	PYY3	Q5JQD4	70 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	CLLU1	Q5K131	121 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	C10orf113	Q5VZT2	155 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	MIC13	Q5XKP0	118 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	AKAP14	Q86UN6	197 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	C8orf59	Q8N0T1	100 aa	Predicted RBP	0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	C9orf62	Q8N4C0	152 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	KCNRG	Q8N5I3	272 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	TTC9C	Q8N5M4	171 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	LCN9	Q8WX39	176 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	TSLP	Q969D9	159 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	AQP10	Q96PS8	301 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	C2orf88	Q9BSF0	95 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	PDCD10	Q9BUL8	212 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	SEC11C	Q9BY50	192 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	CYP4F30P	Q9H0H9	118 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	MRPL40	Q9NQ50	206 aa	Known RBP	0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	SCP2D1	Q9UJQ7	156 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	LSM2	Q9Y333	95 aa	Known RBP	0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	CDK5RAP2	Q96SN8	1893 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	PKD1L2	Q7Z442	2459 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	CAD	P27708	2225 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	ANK3	Q12955	4377 aa	Known RBP	0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	C5orf42	Q9H799	3197 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	KTN1	Q86UP2	1357 aa	Known RBP	0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	AKAP6	Q13023	2319 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	PDE4DIP	Q5VU43	2346 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	PLCE1	Q9P212	2302 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	PTPRQ	Q9UMZ3	2332 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	FANCA	O15360	1455 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	GAPVD1	Q14C86	1478 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	NCOA2	Q15596	1464 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	RALGAPB	Q86X10	1494 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	PLEKHH2	Q8IVE3	1493 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	TEX14	Q8IWB6	1497 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	CFAP47	Q6ZTR5	3102 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	DNAH6	Q9C0G6	4158 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	ANKHD1	Q8IWZ3	2542 aa	Known RBP	0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	TLN1	Q9Y490	2541 aa	Known RBP	0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	RB1CC1	Q8TDY2	1594 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	TRIO	O75962	3097 aa		0.15	□□□□□ -2.39
PTCD3-209	ENST00000472044	SPTBN1	Q01082	2364 aa	Known RBP	0.14	□□□□□ -2.39
PTCD3-209	ENST00000472044	PKHD1L1	Q86WI1	4243 aa		0.14	□□□□□ -2.39

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