RNA–Protein interactions for RNA: ENST00000466054.1

LRCH3-211, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 2

Gene LRCH3, Length 683 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-211ENST00000466054 CCL8P80075 99 aa-0.47□□□□□ -2.48
LRCH3-211ENST00000466054 ALX1Q15699 326 aa-0.47□□□□□ -2.48
LRCH3-211ENST00000466054 KRTAP19-8Q3LI54 63 aa-0.47□□□□□ -2.48
LRCH3-211ENST00000466054 SPTSSBQ8NFR3 76 aa-0.47□□□□□ -2.48
LRCH3-211ENST00000466054 COPZ2Q9P299 210 aa-0.47□□□□□ -2.48
LRCH3-211ENST00000466054 DOPEY2Q9Y3R5 2298 aa-0.47□□□□□ -2.48
LRCH3-211ENST00000466054 LRP1BQ9NZR2 4599 aa-0.47□□□□□ -2.48
LRCH3-211ENST00000466054 ZNF292O60281 2723 aa-0.47□□□□□ -2.49
LRCH3-211ENST00000466054 ALMS1Q8TCU4 4167 aa-0.48□□□□□ -2.49
LRCH3-211ENST00000466054 M0R3E3 92 aa-0.48□□□□□ -2.49
LRCH3-211ENST00000466054 SNCGO76070 127 aa-0.48□□□□□ -2.49
LRCH3-211ENST00000466054 WFDC2Q14508 124 aa-0.48□□□□□ -2.49
LRCH3-211ENST00000466054 KRTAP20-2Q3LI61 65 aa-0.48□□□□□ -2.49
LRCH3-211ENST00000466054 LINC00312Q9Y6C7 94 aa-0.48□□□□□ -2.49
LRCH3-211ENST00000466054 BSNQ9UPA5 3926 aa-0.48□□□□□ -2.49
LRCH3-211ENST00000466054 ZNF609O15014 1411 aa-0.48□□□□□ -2.49
LRCH3-211ENST00000466054 DCHS2Q6V1P9 2916 aa-0.48□□□□□ -2.49
LRCH3-211ENST00000466054 PXDNQ92626 1479 aa-0.48□□□□□ -2.49
LRCH3-211ENST00000466054 COL6A3P12111 3177 aa-0.49□□□□□ -2.49
LRCH3-211ENST00000466054 NWD2Q9ULI1 1742 aa-0.49□□□□□ -2.49
LRCH3-211ENST00000466054 BIRC6Q9NR09 4857 aa-0.49□□□□□ -2.49
LRCH3-211ENST00000466054 TSTD1Q8NFU3 115 aa-0.49□□□□□ -2.49
LRCH3-211ENST00000466054 NBEAL1Q6ZS30 2694 aa-0.5□□□□□ -2.49
LRCH3-211ENST00000466054 WNK3Q9BYP7 1800 aa-0.5□□□□□ -2.49
LRCH3-211ENST00000466054 CFAP126Q5VTH2 177 aa-0.5□□□□□ -2.49
LRCH3-211ENST00000466054 KCNRGQ8N5I3 272 aa-0.5□□□□□ -2.49
LRCH3-211ENST00000466054 TCEAL4Q96EI5 215 aa-0.5□□□□□ -2.49
LRCH3-211ENST00000466054 PTPRQQ9UMZ3 2332 aa-0.5□□□□□ -2.49
LRCH3-211ENST00000466054 DOPEY1Q5JWR5 2465 aa-0.5□□□□□ -2.49
LRCH3-211ENST00000466054 FLGP20930 4061 aaPredicted RBP-0.51□□□□□ -2.49
LRCH3-211ENST00000466054 MT4P47944 62 aa-0.51□□□□□ -2.49
LRCH3-211ENST00000466054 COPZ1P61923 177 aa-0.51□□□□□ -2.49
LRCH3-211ENST00000466054 RPS25P62851 125 aaKnown RBP-0.51□□□□□ -2.49
LRCH3-211ENST00000466054 SMIM21Q3B7S5 101 aa-0.51□□□□□ -2.49
LRCH3-211ENST00000466054 ANP32BQ92688 251 aaKnown RBP-0.51□□□□□ -2.49
LRCH3-211ENST00000466054 IFT140Q96RY7 1462 aa-0.51□□□□□ -2.49
LRCH3-211ENST00000466054 TMEM191AQ9H0A3 160 aa-0.51□□□□□ -2.49
LRCH3-211ENST00000466054 UNC13AQ9UPW8 1703 aa-0.51□□□□□ -2.49
LRCH3-211ENST00000466054 AKAP6Q13023 2319 aa-0.52□□□□□ -2.49
LRCH3-211ENST00000466054 PLXNB2O15031 1838 aa-0.52□□□□□ -2.49
LRCH3-211ENST00000466054 ZNF518AQ6AHZ1 1483 aa-0.52□□□□□ -2.49
LRCH3-211ENST00000466054 CASKIN1Q8WXD9 1431 aa-0.52□□□□□ -2.49
LRCH3-211ENST00000466054 CCL18P55774 89 aa-0.52□□□□□ -2.49
LRCH3-211ENST00000466054 DEFB109BQ30KR1 87 aa-0.52□□□□□ -2.49
LRCH3-211ENST00000466054 S100A7L2Q5SY68 101 aa-0.52□□□□□ -2.49
LRCH3-211ENST00000466054 Q5VSD8 79 aa-0.52□□□□□ -2.49
LRCH3-211ENST00000466054 MAFIPQ8WZ33 124 aa-0.52□□□□□ -2.49
LRCH3-211ENST00000466054 TPT1P8Q9HAU6 139 aa-0.52□□□□□ -2.49
LRCH3-211ENST00000466054 PTPN13Q12923 2485 aa-0.52□□□□□ -2.49
LRCH3-211ENST00000466054 KDM3BQ7LBC6 1761 aa-0.52□□□□□ -2.49
LRCH3-211ENST00000466054 STAB2Q8WWQ8 2551 aa-0.52□□□□□ -2.49
LRCH3-211ENST00000466054 PKHD1P08F94 4074 aa-0.53□□□□□ -2.49
LRCH3-211ENST00000466054 MYH8P13535 1937 aa-0.53□□□□□ -2.49
LRCH3-211ENST00000466054 NBPF19A0A087WUL8 3843 aa-0.53□□□□□ -2.49
LRCH3-211ENST00000466054 TRAV22A0A0B4J277 110 aa-0.53□□□□□ -2.49
LRCH3-211ENST00000466054 SPRR2DP22532 72 aa-0.53□□□□□ -2.49
LRCH3-211ENST00000466054 SEC11CQ9BY50 192 aa-0.53□□□□□ -2.49
LRCH3-211ENST00000466054 SCN3BQ9NY72 215 aa-0.53□□□□□ -2.49
LRCH3-211ENST00000466054 SPEF2Q9C093 1822 aa-0.54□□□□□ -2.5
LRCH3-211ENST00000466054 PKDREJQ9NTG1 2253 aa-0.54□□□□□ -2.5
LRCH3-211ENST00000466054 PRDM2Q13029 1718 aa-0.54□□□□□ -2.5
LRCH3-211ENST00000466054 SIX6O95475 246 aa-0.54□□□□□ -2.5
LRCH3-211ENST00000466054 SDF2Q99470 211 aa-0.54□□□□□ -2.5
LRCH3-211ENST00000466054 SPCS1Q9Y6A9 102 aa-0.54□□□□□ -2.5
LRCH3-211ENST00000466054 C2CD3Q4AC94 2353 aa-0.54□□□□□ -2.5
LRCH3-211ENST00000466054 PKD1L1Q8TDX9 2849 aa-0.55□□□□□ -2.5
LRCH3-211ENST00000466054 PPRC1Q5VV67 1664 aaKnown RBP-0.55□□□□□ -2.5
LRCH3-211ENST00000466054 SMCO1Q147U7 214 aa-0.55□□□□□ -2.5
LRCH3-211ENST00000466054 NPVFQ9HCQ7 196 aa-0.55□□□□□ -2.5
LRCH3-211ENST00000466054 CCDC167Q9P0B6 97 aa-0.55□□□□□ -2.5
LRCH3-211ENST00000466054 R4GMQ9 66 aa-0.55□□□□□ -2.5
LRCH3-211ENST00000466054 FLNBO75369 2602 aaKnown RBP-0.55□□□□□ -2.5
LRCH3-211ENST00000466054 SETD2Q9BYW2 2564 aaPredicted RBP-0.55□□□□□ -2.5
LRCH3-211ENST00000466054 MYOM3Q5VTT5 1437 aa-0.55□□□□□ -2.5
LRCH3-211ENST00000466054 RYR2Q92736 4967 aa-0.56□□□□□ -2.5
LRCH3-211ENST00000466054 CSMD3Q7Z407 3707 aa-0.56□□□□□ -2.5
LRCH3-211ENST00000466054 Q8IZM0 81 aa-0.56□□□□□ -2.5
LRCH3-211ENST00000466054 HECTD1Q9ULT8 2610 aa-0.57□□□□□ -2.5
LRCH3-211ENST00000466054 FAT2Q9NYQ8 4349 aa-0.57□□□□□ -2.5
LRCH3-211ENST00000466054 TGP01266 2768 aa-0.57□□□□□ -2.5
LRCH3-211ENST00000466054 PIGBOS1A0A0B4J2F0 54 aa-0.57□□□□□ -2.5
LRCH3-211ENST00000466054 SPAARA0A1B0GVQ0 90 aa-0.57□□□□□ -2.5
LRCH3-211ENST00000466054 DPH3Q96FX2 82 aa-0.57□□□□□ -2.5
LRCH3-211ENST00000466054 MXRA5Q9NR99 2828 aa-0.57□□□□□ -2.5
LRCH3-211ENST00000466054 PPP1R17O96001 155 aa-0.58□□□□□ -2.5
LRCH3-211ENST00000466054 SMIM4Q8WVI0 70 aa-0.58□□□□□ -2.5
LRCH3-211ENST00000466054 LAMA2P24043 3122 aaKnown RBP-0.59□□□□□ -2.5
LRCH3-211ENST00000466054 DNAH6Q9C0G6 4158 aa-0.59□□□□□ -2.5
LRCH3-211ENST00000466054 HCG22E2RYF7 251 aa-0.59□□□□□ -2.5
LRCH3-211ENST00000466054 S100A3P33764 101 aa-0.59□□□□□ -2.5
LRCH3-211ENST00000466054 PFDN5Q99471 154 aa-0.59□□□□□ -2.5
LRCH3-211ENST00000466054 RNF213Q63HN8 5207 aa-0.59□□□□□ -2.5
LRCH3-211ENST00000466054 LRRC37A2A6NM11 1700 aa-0.59□□□□□ -2.5
LRCH3-211ENST00000466054 EP300Q09472 2414 aaPredicted RBP-0.59□□□□□ -2.5
LRCH3-211ENST00000466054 USP9YO00507 2555 aaPredicted RBP-0.59□□□□□ -2.5
LRCH3-211ENST00000466054 GRIN2AQ12879 1464 aa-0.6□□□□□ -2.5
LRCH3-211ENST00000466054 PLCE1Q9P212 2302 aa-0.6□□□□□ -2.51
LRCH3-211ENST00000466054 ACANP16112 2415 aa-0.6□□□□□ -2.51
LRCH3-211ENST00000466054 TRAV13-2A0A0B4J235 113 aa-0.6□□□□□ -2.51
LRCH3-211ENST00000466054 LOC105371267A0A1B0GV96 52 aa-0.6□□□□□ -2.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms