RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 VAX2Q9UIW0 290 aa5.03□□□□□ -1.6
VPS50-204ENST00000438395 IGLV10-54A0A075B6I4 117 aa5.02□□□□□ -1.61
VPS50-204ENST00000438395 SMLR1H3BR10 107 aa5.02□□□□□ -1.61
VPS50-204ENST00000438395 BCL2L11O43521 198 aa5.02□□□□□ -1.61
VPS50-204ENST00000438395 P01737 135 aa5.02□□□□□ -1.61
VPS50-204ENST00000438395 PRSS1P07477 247 aa5.02□□□□□ -1.61
VPS50-204ENST00000438395 TRGC1P0CF51 173 aa5.02□□□□□ -1.61
VPS50-204ENST00000438395 SULT1A2P50226 295 aa5.02□□□□□ -1.61
VPS50-204ENST00000438395 CACNG7P62955 275 aa5.02□□□□□ -1.61
VPS50-204ENST00000438395 REG3AQ06141 175 aa5.02□□□□□ -1.61
VPS50-204ENST00000438395 IQCJQ1A5X6 159 aa5.02□□□□□ -1.61
VPS50-204ENST00000438395 CENPWQ5EE01 88 aa5.02□□□□□ -1.61
VPS50-204ENST00000438395 MLST8Q9BVC4 326 aa5.02□□□□□ -1.61
VPS50-204ENST00000438395 BIN3Q9NQY0 253 aa5.02□□□□□ -1.61
VPS50-204ENST00000438395 PRR34Q9NV39 138 aa5.02□□□□□ -1.61
VPS50-204ENST00000438395 HMCN2Q8NDA2 5059 aa5.01□□□□□ -1.61
VPS50-204ENST00000438395 IGHV3-64A0A075B6Q5 118 aa5.01□□□□□ -1.61
VPS50-204ENST00000438395 TRAV8-4A0A0B4J246 113 aa5.01□□□□□ -1.61
VPS50-204ENST00000438395 G3V3Q6 166 aa5.01□□□□□ -1.61
VPS50-204ENST00000438395 IFNA1P01562 189 aa5.01□□□□□ -1.61
VPS50-204ENST00000438395 GNG4P50150 75 aa5.01□□□□□ -1.61
VPS50-204ENST00000438395 NKX2-5P52952 324 aaPredicted RBP5.01□□□□□ -1.61
VPS50-204ENST00000438395 COTL1Q14019 142 aa5.01□□□□□ -1.61
VPS50-204ENST00000438395 SUMO4Q6EEV6 95 aa5.01□□□□□ -1.61
VPS50-204ENST00000438395 EIF5AL1Q6IS14 154 aaKnown RBP5.01□□□□□ -1.61
VPS50-204ENST00000438395 RASL11AQ6T310 242 aa5.01□□□□□ -1.61
VPS50-204ENST00000438395 NTM-AS1Q6ZSK4 140 aa5.01□□□□□ -1.61
VPS50-204ENST00000438395 C9orf163Q8N9P6 203 aa5.01□□□□□ -1.61
VPS50-204ENST00000438395 F2Z2F3 143 aa5□□□□□ -1.61
VPS50-204ENST00000438395 M0QY20 66 aa5□□□□□ -1.61
VPS50-204ENST00000438395 GZMBP10144 247 aa5□□□□□ -1.61
VPS50-204ENST00000438395 AMTP48728 403 aa5□□□□□ -1.61
VPS50-204ENST00000438395 RAB5CP51148 216 aa5□□□□□ -1.61
VPS50-204ENST00000438395 PTTG1IPP53801 180 aa5□□□□□ -1.61
VPS50-204ENST00000438395 CFAP161Q6P656 301 aa5□□□□□ -1.61
VPS50-204ENST00000438395 C11orf52Q96A22 123 aa5□□□□□ -1.61
VPS50-204ENST00000438395 SMIM12Q96EX1 92 aa5□□□□□ -1.61
VPS50-204ENST00000438395 DPH3P1Q9H4G8 78 aa5□□□□□ -1.61
VPS50-204ENST00000438395 DNAH8Q96JB1 4490 aa5□□□□□ -1.61
VPS50-204ENST00000438395 HMSDA8MTL9 139 aa4.99□□□□□ -1.61
VPS50-204ENST00000438395 PDE6DO43924 150 aa4.99□□□□□ -1.61
VPS50-204ENST00000438395 KRTAP10-4P60372 401 aaPredicted RBP4.99□□□□□ -1.61
VPS50-204ENST00000438395 CNBPP62633 177 aaKnown RBP4.99□□□□□ -1.61
VPS50-204ENST00000438395 AMMECR1LQ6DCA0 310 aa4.99□□□□□ -1.61
VPS50-204ENST00000438395 SMIM15Q7Z3B0 74 aa4.99□□□□□ -1.61
VPS50-204ENST00000438395 C7orf33Q8WU49 177 aa4.99□□□□□ -1.61
VPS50-204ENST00000438395 RNF185Q96GF1 192 aa4.99□□□□□ -1.61
VPS50-204ENST00000438395 PGLYRP4Q96LB8 373 aa4.99□□□□□ -1.61
VPS50-204ENST00000438395 NIT2Q9NQR4 276 aa4.99□□□□□ -1.61
VPS50-204ENST00000438395 KIF25-AS1Q9Y6Z4 181 aa4.99□□□□□ -1.61
VPS50-204ENST00000438395 TRAV1-1A0A0B4J248 108 aa4.98□□□□□ -1.61
VPS50-204ENST00000438395 IGKV3OR2-268A0A0C4DH90 116 aa4.98□□□□□ -1.61
VPS50-204ENST00000438395 A0A1B0GUV1 79 aa4.98□□□□□ -1.61
VPS50-204ENST00000438395 IGLC6P0CF74 106 aa4.98□□□□□ -1.61
VPS50-204ENST00000438395 CCL20P78556 96 aa4.98□□□□□ -1.61
VPS50-204ENST00000438395 MEF2BQ02080 365 aaPredicted RBP4.98□□□□□ -1.61
VPS50-204ENST00000438395 TWIST1Q15672 202 aa4.98□□□□□ -1.61
VPS50-204ENST00000438395 KRTAP15-1Q3LI76 137 aa4.98□□□□□ -1.61
VPS50-204ENST00000438395 SDIM1Q6ZPB5 146 aa4.98□□□□□ -1.61
VPS50-204ENST00000438395 MED9Q9NWA0 146 aa4.98□□□□□ -1.61
VPS50-204ENST00000438395 IGLV4-60A0A075B6I1 120 aa4.97□□□□□ -1.61
VPS50-204ENST00000438395 RAB19A4D1S5 217 aa4.97□□□□□ -1.61
VPS50-204ENST00000438395 TAGLN2P37802 199 aaKnown RBP4.97□□□□□ -1.61
VPS50-204ENST00000438395 RNASEKQ6P5S7 137 aaKnown RBP4.97□□□□□ -1.61
VPS50-204ENST00000438395 LYZL1Q6UWQ5 148 aa4.97□□□□□ -1.61
VPS50-204ENST00000438395 C20orf203Q8NBC4 194 aa4.97□□□□□ -1.61
VPS50-204ENST00000438395 PKIGQ9Y2B9 76 aa4.97□□□□□ -1.61
VPS50-204ENST00000438395 LRP1Q07954 4544 aaKnown RBP4.96□□□□□ -1.62
VPS50-204ENST00000438395 C19orf71A6NCJ1 209 aa4.96□□□□□ -1.62
VPS50-204ENST00000438395 GAGE12HA6NDE8 117 aa4.96□□□□□ -1.62
VPS50-204ENST00000438395 APCSP02743 223 aa4.96□□□□□ -1.62
VPS50-204ENST00000438395 BCL2P10415 239 aa4.96□□□□□ -1.62
VPS50-204ENST00000438395 NTF3P20783 257 aa4.96□□□□□ -1.62
VPS50-204ENST00000438395 CTRLP40313 264 aa4.96□□□□□ -1.62
VPS50-204ENST00000438395 KRTAP26-1Q6PEX3 210 aa4.96□□□□□ -1.62
VPS50-204ENST00000438395 Q6ZRU5 148 aa4.96□□□□□ -1.62
VPS50-204ENST00000438395 BTF3L4Q96K17 158 aa4.96□□□□□ -1.62
VPS50-204ENST00000438395 RPP21Q9H633 154 aaKnown RBP4.96□□□□□ -1.62
VPS50-204ENST00000438395 A0A087WYN8 130 aa4.95□□□□□ -1.62
VPS50-204ENST00000438395 IGKV2-24A0A0C4DH68 120 aa4.95□□□□□ -1.62
VPS50-204ENST00000438395 PANO1I0J062 215 aa4.95□□□□□ -1.62
VPS50-204ENST00000438395 CHTF8P0CG12 524 aa4.95□□□□□ -1.62
VPS50-204ENST00000438395 RPS10P46783 165 aaKnown RBP4.95□□□□□ -1.62
VPS50-204ENST00000438395 HNRNPA3P51991 378 aaKnown RBP4.95□□□□□ -1.62
VPS50-204ENST00000438395 CIRBPQ14011 172 aaKnown RBP4.95□□□□□ -1.62
VPS50-204ENST00000438395 MAJINQ3KP22 176 aa4.95□□□□□ -1.62
VPS50-204ENST00000438395 HIGD2BQ4VC39 106 aa4.95□□□□□ -1.62
VPS50-204ENST00000438395 TEX261Q6UWH6 196 aa4.95□□□□□ -1.62
VPS50-204ENST00000438395 SPACA4Q8TDM5 124 aa4.95□□□□□ -1.62
VPS50-204ENST00000438395 BORCS7Q96B45 105 aa4.95□□□□□ -1.62
VPS50-204ENST00000438395 TMEM101Q96IK0 257 aa4.95□□□□□ -1.62
VPS50-204ENST00000438395 GFRA4Q9GZZ7 299 aa4.95□□□□□ -1.62
VPS50-204ENST00000438395 UBR4Q5T4S7 5183 aa4.94□□□□□ -1.62
VPS50-204ENST00000438395 TRAV26-2A0A0B4J265 109 aa4.94□□□□□ -1.62
VPS50-204ENST00000438395 NCR2O95944 276 aa4.94□□□□□ -1.62
VPS50-204ENST00000438395 C9orf62Q8N4C0 152 aa4.94□□□□□ -1.62
VPS50-204ENST00000438395 GTSF1Q8WW33 167 aa4.94□□□□□ -1.62
VPS50-204ENST00000438395 CHCHD10Q8WYQ3 142 aaPredicted RBP4.94□□□□□ -1.62
VPS50-204ENST00000438395 LINC00474Q9P2X8 69 aa4.94□□□□□ -1.62
VPS50-204ENST00000438395 TRBV20OR9-2A0A075B6H5 130 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms