RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 WFDC10AQ9H1F0 79 aa11.76□□□□□ -0.53
PTPRF-201ENST00000359947 A0A1B0GX51 115 aa11.75□□□□□ -0.53
PTPRF-201ENST00000359947 IGF1P05019 195 aa11.75□□□□□ -0.53
PTPRF-201ENST00000359947 PIEZO2Q9H5I5 2752 aa11.75□□□□□ -0.53
PTPRF-201ENST00000359947 ANKRD39Q53RE8 183 aa11.74□□□□□ -0.53
PTPRF-201ENST00000359947 C20orf173Q96LM9 149 aa11.74□□□□□ -0.53
PTPRF-201ENST00000359947 C11orf86A6NJI1 115 aa11.74□□□□□ -0.53
PTPRF-201ENST00000359947 CHCHD10Q8WYQ3 142 aaPredicted RBP11.74□□□□□ -0.53
PTPRF-201ENST00000359947 IGKV2D-26A0A0A0MRZ7 120 aa11.73□□□□□ -0.53
PTPRF-201ENST00000359947 LYRM9A8MSI8 78 aa11.73□□□□□ -0.53
PTPRF-201ENST00000359947 SVIPQ8NHG7 77 aa11.73□□□□□ -0.53
PTPRF-201ENST00000359947 IGKV1D-37A0A075B6S9 117 aa11.73□□□□□ -0.53
PTPRF-201ENST00000359947 C10orf91Q5T1B1 145 aa11.73□□□□□ -0.53
PTPRF-201ENST00000359947 NUP210LQ5VU65 1888 aa11.73□□□□□ -0.53
PTPRF-201ENST00000359947 IGKV4-1P06312 121 aa11.73□□□□□ -0.53
PTPRF-201ENST00000359947 ZFAND2AQ8N6M9 145 aa11.73□□□□□ -0.53
PTPRF-201ENST00000359947 ZNF80P51504 273 aaPredicted RBP11.73□□□□□ -0.53
PTPRF-201ENST00000359947 MP68P56378 58 aa11.73□□□□□ -0.53
PTPRF-201ENST00000359947 OXLD1Q5BKU9 147 aa11.72□□□□□ -0.53
PTPRF-201ENST00000359947 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-201ENST00000359947 NUPR1O60356 82 aa11.72□□□□□ -0.53
PTPRF-201ENST00000359947 COX7BP24311 80 aa11.72□□□□□ -0.53
PTPRF-201ENST00000359947 GDF5OSQ5U4N7 250 aa11.72□□□□□ -0.53
PTPRF-201ENST00000359947 ALPK3Q96L96 1907 aa11.72□□□□□ -0.53
PTPRF-201ENST00000359947 Q6ZSR3 168 aa11.72□□□□□ -0.53
PTPRF-201ENST00000359947 TRBV10-1A0A0K0K1A3 114 aa11.71□□□□□ -0.53
PTPRF-201ENST00000359947 NFE4Q86UQ8 179 aa11.71□□□□□ -0.54
PTPRF-201ENST00000359947 PRO3102Q9H379 93 aa11.71□□□□□ -0.54
PTPRF-201ENST00000359947 LGALS9O00182 355 aa11.7□□□□□ -0.54
PTPRF-201ENST00000359947 LINC00467Q9BRT7 94 aa11.7□□□□□ -0.54
PTPRF-201ENST00000359947 LINC01006Q8NI28 216 aa11.7□□□□□ -0.54
PTPRF-201ENST00000359947 IGHV1-58A0A0C4DH39 117 aa11.7□□□□□ -0.54
PTPRF-201ENST00000359947 MED14OSP0DP75 135 aa11.7□□□□□ -0.54
PTPRF-201ENST00000359947 CTRLP40313 264 aa11.7□□□□□ -0.54
PTPRF-201ENST00000359947 SMIM9A6NGZ8 99 aa11.69□□□□□ -0.54
PTPRF-201ENST00000359947 FOXI1Q12951 378 aa11.69□□□□□ -0.54
PTPRF-201ENST00000359947 NAV3Q8IVL0 2385 aa11.69□□□□□ -0.54
PTPRF-201ENST00000359947 C1orf229Q6ZS94 237 aaPredicted RBP11.69□□□□□ -0.54
PTPRF-201ENST00000359947 FRMD6-AS1P0C7T7 363 aa11.69□□□□□ -0.54
PTPRF-201ENST00000359947 C20orf203Q8NBC4 194 aa11.69□□□□□ -0.54
PTPRF-201ENST00000359947 PROK1P58294 105 aa11.69□□□□□ -0.54
PTPRF-201ENST00000359947 C7orf33Q8WU49 177 aa11.69□□□□□ -0.54
PTPRF-201ENST00000359947 BBC3Q96PG8 261 aaPredicted RBP11.69□□□□□ -0.54
PTPRF-201ENST00000359947 K7EQG2 157 aa11.68□□□□□ -0.54
PTPRF-201ENST00000359947 HRCT1Q6UXD1 115 aa11.68□□□□□ -0.54
PTPRF-201ENST00000359947 XAGE1AQ9HD64 81 aa11.68□□□□□ -0.54
PTPRF-201ENST00000359947 NDUFC2O95298 119 aa11.68□□□□□ -0.54
PTPRF-201ENST00000359947 CDPF1Q6NVV7 123 aa11.68□□□□□ -0.54
PTPRF-201ENST00000359947 UBE2D1P51668 147 aa11.68□□□□□ -0.54
PTPRF-201ENST00000359947 SMIM20Q8N5G0 67 aa11.68□□□□□ -0.54
PTPRF-201ENST00000359947 MIFP14174 115 aa11.68□□□□□ -0.54
PTPRF-201ENST00000359947 PSMB8P28062 276 aa11.68□□□□□ -0.54
PTPRF-201ENST00000359947 HCFC1P51610 2035 aa11.67□□□□□ -0.54
PTPRF-201ENST00000359947 TRAV10A0A0B4J240 114 aa11.67□□□□□ -0.54
PTPRF-201ENST00000359947 FAM236AA0A1B0GUQ0 79 aa11.67□□□□□ -0.54
PTPRF-201ENST00000359947 FAM236BA0A1B0GV22 79 aa11.67□□□□□ -0.54
PTPRF-201ENST00000359947 PRM2P04554 102 aa11.67□□□□□ -0.54
PTPRF-201ENST00000359947 C11orf71Q6IPW1 123 aa11.67□□□□□ -0.54
PTPRF-201ENST00000359947 LINC00526Q96FQ7 95 aa11.67□□□□□ -0.54
PTPRF-201ENST00000359947 TDRG1Q3Y452 100 aa11.67□□□□□ -0.54
PTPRF-201ENST00000359947 Q6ZS46 218 aa11.67□□□□□ -0.54
PTPRF-201ENST00000359947 MUC4Q99102 2169 aa11.67□□□□□ -0.54
PTPRF-201ENST00000359947 NANOS2P60321 138 aaKnown RBP11.66□□□□□ -0.54
PTPRF-201ENST00000359947 Q8N976 141 aa11.66□□□□□ -0.54
PTPRF-201ENST00000359947 CDSNQ15517 529 aa11.66□□□□□ -0.54
PTPRF-201ENST00000359947 ZNF702PQ9H963 129 aa11.66□□□□□ -0.54
PTPRF-201ENST00000359947 FXYD2P54710 66 aa11.66□□□□□ -0.54
PTPRF-201ENST00000359947 DCANP1Q8TF63 244 aa11.66□□□□□ -0.54
PTPRF-201ENST00000359947 NCOR2Q9Y618 2525 aa11.66□□□□□ -0.54
PTPRF-201ENST00000359947 ACYP1P07311 99 aa11.66□□□□□ -0.54
PTPRF-201ENST00000359947 PPDPFQ9H3Y8 114 aa11.66□□□□□ -0.54
PTPRF-201ENST00000359947 IGF2RP11717 2491 aa11.65□□□□□ -0.54
PTPRF-201ENST00000359947 LINC01545Q5VT33 79 aa11.65□□□□□ -0.54
PTPRF-201ENST00000359947 UFSP1Q6NVU6 142 aa11.65□□□□□ -0.54
PTPRF-201ENST00000359947 A0A0J9YWU9 116 aa11.65□□□□□ -0.54
PTPRF-201ENST00000359947 A0A0B4J2C4 111 aa11.65□□□□□ -0.54
PTPRF-201ENST00000359947 C9orf85Q96MD7 179 aa11.64□□□□□ -0.55
PTPRF-201ENST00000359947 E9PLD3 99 aa11.64□□□□□ -0.55
PTPRF-201ENST00000359947 KPRPQ5T749 579 aaPredicted RBP11.64□□□□□ -0.55
PTPRF-201ENST00000359947 NAV2Q8IVL1 2488 aa11.64□□□□□ -0.55
PTPRF-201ENST00000359947 TMEM256-PLSCR3K7ERE1 68 aa11.64□□□□□ -0.55
PTPRF-201ENST00000359947 IGKV2-28A0A075B6P5 120 aa11.64□□□□□ -0.55
PTPRF-201ENST00000359947 IGKV2D-28P01615 120 aa11.64□□□□□ -0.55
PTPRF-201ENST00000359947 KRTAP10-9P60411 292 aa11.64□□□□□ -0.55
PTPRF-201ENST00000359947 SPANXCQ9NY87 97 aa11.64□□□□□ -0.55
PTPRF-201ENST00000359947 NEXN-AS1Q8NBZ9 246 aa11.63□□□□□ -0.55
PTPRF-201ENST00000359947 CLUHP3Q96NS8 147 aa11.63□□□□□ -0.55
PTPRF-201ENST00000359947 SPINK6Q6UWN8 80 aa11.63□□□□□ -0.55
PTPRF-201ENST00000359947 UBE2D4Q9Y2X8 147 aa11.63□□□□□ -0.55
PTPRF-201ENST00000359947 CFAP126Q5VTH2 177 aa11.63□□□□□ -0.55
PTPRF-201ENST00000359947 TRBV10-2A0A0K0K1G8 114 aa11.62□□□□□ -0.55
PTPRF-201ENST00000359947 SEC61GP60059 68 aa11.62□□□□□ -0.55
PTPRF-201ENST00000359947 LINC00322Q6ZN03 302 aaPredicted RBP11.62□□□□□ -0.55
PTPRF-201ENST00000359947 EXPH5Q8NEV8 1989 aa11.62□□□□□ -0.55
PTPRF-201ENST00000359947 ATOX1O00244 68 aa11.62□□□□□ -0.55
PTPRF-201ENST00000359947 LINC01620Q4KN68 170 aa11.62□□□□□ -0.55
PTPRF-201ENST00000359947 CASC2Q6XLA1 102 aa11.62□□□□□ -0.55
PTPRF-201ENST00000359947 LOC100131303A0A0U1RQF7 123 aa11.61□□□□□ -0.55
PTPRF-201ENST00000359947 LYPD6Q86Y78 171 aa11.61□□□□□ -0.55
PTPRF-201ENST00000359947 H3BQ85 93 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms