RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 C14orf177Q52M58 125 aa10.23□□□□□ -0.77
SF3A1-201ENST00000215793 IL17DQ8TAD2 202 aa10.23□□□□□ -0.77
SF3A1-201ENST00000215793 Q6YL49 198 aa10.23□□□□□ -0.77
SF3A1-201ENST00000215793 LINC00643Q86TS7 51 aa10.23□□□□□ -0.77
SF3A1-201ENST00000215793 LYRM9A8MSI8 78 aa10.22□□□□□ -0.77
SF3A1-201ENST00000215793 COL4A3Q01955 1670 aa10.22□□□□□ -0.77
SF3A1-201ENST00000215793 MBD6Q96DN6 1003 aa10.22□□□□□ -0.77
SF3A1-201ENST00000215793 CRYGBP07316 175 aa10.22□□□□□ -0.77
SF3A1-201ENST00000215793 MYO9AB2RTY4 2548 aa10.22□□□□□ -0.77
SF3A1-201ENST00000215793 H7C423 109 aa10.22□□□□□ -0.77
SF3A1-201ENST00000215793 ZNF295-AS1Q8N0V1 137 aa10.22□□□□□ -0.77
SF3A1-201ENST00000215793 DSCAML1Q8TD84 2053 aa10.22□□□□□ -0.77
SF3A1-201ENST00000215793 DEFB114Q30KQ6 69 aa10.21□□□□□ -0.77
SF3A1-201ENST00000215793 C11orf45Q8TAV5 145 aa10.21□□□□□ -0.77
SF3A1-201ENST00000215793 TP53TG3Q9ULZ0 132 aa10.21□□□□□ -0.77
SF3A1-201ENST00000215793 REG3AQ06141 175 aa10.21□□□□□ -0.77
SF3A1-201ENST00000215793 EIF4EBP1Q13541 118 aaPredicted RBP10.21□□□□□ -0.77
SF3A1-201ENST00000215793 TRAV26-1A0A087WT03 109 aa10.21□□□□□ -0.78
SF3A1-201ENST00000215793 GDF5OSQ5U4N7 250 aa10.21□□□□□ -0.78
SF3A1-201ENST00000215793 PLXNB1O43157 2135 aa10.2□□□□□ -0.78
SF3A1-201ENST00000215793 ABCA2Q9BZC7 2435 aa10.2□□□□□ -0.78
SF3A1-201ENST00000215793 G3V4G9 280 aa10.2□□□□□ -0.78
SF3A1-201ENST00000215793 P0DMU3 169 aa10.2□□□□□ -0.78
SF3A1-201ENST00000215793 FAM231AP0DMU4 169 aa10.2□□□□□ -0.78
SF3A1-201ENST00000215793 FAM231CP0DMU5 169 aa10.2□□□□□ -0.78
SF3A1-201ENST00000215793 ARHGAP21Q5T5U3 1957 aa10.2□□□□□ -0.78
SF3A1-201ENST00000215793 LINC00269Q8N2A0 174 aa10.2□□□□□ -0.78
SF3A1-201ENST00000215793 NEXN-AS1Q8NBZ9 246 aa10.2□□□□□ -0.78
SF3A1-201ENST00000215793 FAM222AQ5U5X8 452 aa10.2□□□□□ -0.78
SF3A1-201ENST00000215793 CRIP3Q6Q6R5 217 aa10.2□□□□□ -0.78
SF3A1-201ENST00000215793 PTH2Q96A98 100 aa10.2□□□□□ -0.78
SF3A1-201ENST00000215793 B9D2Q9BPU9 175 aa10.2□□□□□ -0.78
SF3A1-201ENST00000215793 C14orf132Q9NPU4 83 aa10.2□□□□□ -0.78
SF3A1-201ENST00000215793 J3KT08 172 aa10.19□□□□□ -0.78
SF3A1-201ENST00000215793 TCL1BO95988 128 aa10.19□□□□□ -0.78
SF3A1-201ENST00000215793 IGKV2D-26A0A0A0MRZ7 120 aa10.19□□□□□ -0.78
SF3A1-201ENST00000215793 C1orf229Q6ZS94 237 aaPredicted RBP10.19□□□□□ -0.78
SF3A1-201ENST00000215793 CDKN2A-AS1Q9UH64 79 aa10.19□□□□□ -0.78
SF3A1-201ENST00000215793 KIF26AQ9ULI4 1882 aaPredicted RBP10.19□□□□□ -0.78
SF3A1-201ENST00000215793 IGHV4-31P0DP07 118 aa10.19□□□□□ -0.78
SF3A1-201ENST00000215793 PRORYQ9H606 182 aa10.19□□□□□ -0.78
SF3A1-201ENST00000215793 ZFAND3Q9H8U3 227 aa10.18□□□□□ -0.78
SF3A1-201ENST00000215793 LY6LH3BQJ8 138 aa10.18□□□□□ -0.78
SF3A1-201ENST00000215793 C19orf84I3L1E1 186 aa10.18□□□□□ -0.78
SF3A1-201ENST00000215793 LINC00467Q9BRT7 94 aa10.18□□□□□ -0.78
SF3A1-201ENST00000215793 C22orf34Q6ZV56 151 aa10.17□□□□□ -0.78
SF3A1-201ENST00000215793 OBSL1O75147 1896 aa10.17□□□□□ -0.78
SF3A1-201ENST00000215793 CHCHD10Q8WYQ3 142 aaPredicted RBP10.17□□□□□ -0.78
SF3A1-201ENST00000215793 MED12LQ86YW9 2145 aa10.17□□□□□ -0.78
SF3A1-201ENST00000215793 IGLV4-3A0A075B6K6 122 aa10.17□□□□□ -0.78
SF3A1-201ENST00000215793 IBA57-AS1B1ANH7 110 aa10.17□□□□□ -0.78
SF3A1-201ENST00000215793 BPY2O14599 106 aa10.17□□□□□ -0.78
SF3A1-201ENST00000215793 NDUFC2O95298 119 aa10.17□□□□□ -0.78
SF3A1-201ENST00000215793 ZNF22P17026 224 aaPredicted RBP10.17□□□□□ -0.78
SF3A1-201ENST00000215793 H0Y9J4 135 aa10.16□□□□□ -0.78
SF3A1-201ENST00000215793 IGKV2-24A0A0C4DH68 120 aa10.15□□□□□ -0.78
SF3A1-201ENST00000215793 C20orf173Q96LM9 149 aa10.15□□□□□ -0.78
SF3A1-201ENST00000215793 SPANXB1Q9NS25 103 aaPredicted RBP10.15□□□□□ -0.78
SF3A1-201ENST00000215793 M0QY20 66 aa10.15□□□□□ -0.78
SF3A1-201ENST00000215793 HIGD2AQ9BW72 106 aa10.15□□□□□ -0.78
SF3A1-201ENST00000215793 TRBV6-4A0A1B0GX49 114 aa10.15□□□□□ -0.79
SF3A1-201ENST00000215793 TMEM223A0PJW6 202 aa10.15□□□□□ -0.79
SF3A1-201ENST00000215793 NCOR2Q9Y618 2525 aa10.14□□□□□ -0.79
SF3A1-201ENST00000215793 PRB2P02812 416 aaPredicted RBP10.14□□□□□ -0.79
SF3A1-201ENST00000215793 MIFP14174 115 aa10.13□□□□□ -0.79
SF3A1-201ENST00000215793 CFAP126Q5VTH2 177 aa10.13□□□□□ -0.79
SF3A1-201ENST00000215793 WFDC11Q8NEX6 87 aa10.13□□□□□ -0.79
SF3A1-201ENST00000215793 FAM110AQ9BQ89 295 aa10.13□□□□□ -0.79
SF3A1-201ENST00000215793 TRBV6-8A0A0A6YYG3 113 aa10.13□□□□□ -0.79
SF3A1-201ENST00000215793 CRIP1P50238 77 aa10.13□□□□□ -0.79
SF3A1-201ENST00000215793 DEFB131BA0A096LNP1 70 aa10.13□□□□□ -0.79
SF3A1-201ENST00000215793 Q6ZSV7 163 aa10.13□□□□□ -0.79
SF3A1-201ENST00000215793 LINC00308Q8TCZ7 52 aa10.13□□□□□ -0.79
SF3A1-201ENST00000215793 TRBV6-5A0A0K0K1A5 114 aa10.12□□□□□ -0.79
SF3A1-201ENST00000215793 TRBV27A0A0K0K1C4 114 aa10.12□□□□□ -0.79
SF3A1-201ENST00000215793 PLA2G5P39877 138 aa10.12□□□□□ -0.79
SF3A1-201ENST00000215793 HILS1P60008 231 aa10.12□□□□□ -0.79
SF3A1-201ENST00000215793 U3KQK5 164 aa10.12□□□□□ -0.79
SF3A1-201ENST00000215793 C11orf71Q6IPW1 123 aa10.12□□□□□ -0.79
SF3A1-201ENST00000215793 PYGO1Q9Y3Y4 419 aa10.12□□□□□ -0.79
SF3A1-201ENST00000215793 C2orf16Q68DN1 1984 aa10.12□□□□□ -0.79
SF3A1-201ENST00000215793 DSCAMO60469 2012 aa10.12□□□□□ -0.79
SF3A1-201ENST00000215793 CRYGDP07320 174 aa10.12□□□□□ -0.79
SF3A1-201ENST00000215793 UPK3BQ9BT76 320 aa10.12□□□□□ -0.79
SF3A1-201ENST00000215793 ATP5EP2Q5VTU8 51 aa10.11□□□□□ -0.79
SF3A1-201ENST00000215793 DENND4AQ7Z401 1863 aa10.11□□□□□ -0.79
SF3A1-201ENST00000215793 KIR2DL5BQ8NHK3 375 aa10.1□□□□□ -0.79
SF3A1-201ENST00000215793 ADAMTS9Q9P2N4 1935 aa10.1□□□□□ -0.79
SF3A1-201ENST00000215793 TNRC6BQ9UPQ9 1833 aaKnown RBP10.1□□□□□ -0.79
SF3A1-201ENST00000215793 RNF185Q96GF1 192 aa10.1□□□□□ -0.79
SF3A1-201ENST00000215793 SPATA25Q9BR10 227 aa10.1□□□□□ -0.79
SF3A1-201ENST00000215793 TRAV23DV6A0A075B6W5 121 aa10.09□□□□□ -0.79
SF3A1-201ENST00000215793 PSMG3-AS1Q96PY0 264 aa10.09□□□□□ -0.79
SF3A1-201ENST00000215793 TRBV30A0A0K0K1B3 111 aa10.09□□□□□ -0.79
SF3A1-201ENST00000215793 TEX49A0A1B0GTD5 131 aa10.09□□□□□ -0.79
SF3A1-201ENST00000215793 TMEM131Q92545 1883 aa10.08□□□□□ -0.8
SF3A1-201ENST00000215793 SHISA2Q6UWI4 295 aa10.08□□□□□ -0.8
SF3A1-201ENST00000215793 Q8N6K4 173 aa10.08□□□□□ -0.8
SF3A1-201ENST00000215793 IGLV2-11P01706 119 aa10.07□□□□□ -0.8
SF3A1-201ENST00000215793 SEC61GP60059 68 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms