RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Dennd4cA6H8H2 1906 aa12.95□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Cep250Q60952 2414 aa12.95□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Pglyrp3A1A547 347 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Znf385cA2A5E6 429 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Gm21775J3KMK6 180 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Defa3P28310 93 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Defa10P50708 93 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Defa15P50713 93 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Ssbp4Q3U4B1 363 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Bpifa5Q9CQX3 270 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Cpsf4lE9Q2N0 280 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Iqcf6G3UWF2 157 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Spint5J3KMK8 105 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 PspnO70300 156 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Spock3Q8BKV0 436 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Cypt1Q8CH20 168 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Ighv1-67A0A0G2JFN9 117 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 D930048N14RikA2AA67 225 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Ca11O70354 328 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Hs3st6Q5GFD5 342 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 4931428L18RikQ9D4S9 127 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Rbmxl2Q9DAE2 385 aaKnown RBP12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Igkv6-23A0A140T8N5 115 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 E430018J23RikE9PZQ8 461 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Gm21900J3QP38 180 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Nutf2P61971 127 aa12.94□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Gm21616B6ZB74 166 aa12.93□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Fgf4P11403 202 aa12.93□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Znf691Q3TDE8 283 aa12.93□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Nr2c2apQ3TV70 140 aa12.93□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Cops9Q3U898 57 aa12.93□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Olfr904Q7TRC9 310 aa12.93□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Nrn1Q8CFV4 142 aa12.93□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Tmed6Q9CQG0 239 aa12.93□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Trav16A0A075B653 116 aa12.93□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Ighv8-9A0A0G2JET1 119 aa12.93□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Olfr981Q8VEU2 310 aa12.93□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Olfr961Q9EQ84 314 aa12.93□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Sec16aA2AIX1 2377 aa12.93□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Igkv12-89A0A0G2JGW8 112 aa12.93□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Atp6v0cP63082 155 aa12.93□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 H2-DMb2Q31099 261 aa12.93□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 ElaneQ3UP87 265 aa12.93□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Ifi27Q8C6G0 260 aa12.93□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Gm10190Q8BSD7 107 aa12.93□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Frem1Q684R7 2191 aa12.92□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Tstd1E9PY03 133 aa12.92□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Olfr958Q8VEY3 312 aa12.92□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Wnk2Q3UH66 2149 aa12.92□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Trav6n-5A0A075B621 112 aa12.92□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Trav6-5A0A075B6B5 112 aa12.92□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Trav12d-1A0N8R0 115 aa12.92□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 MturnQ8CGA4 131 aa12.92□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Fxyd1Q9Z239 92 aa12.92□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Rnase2bO35292 155 aa12.92□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Rnf126Q91YL2 313 aa12.92□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Olfr150Q60895 312 aa12.92□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 MNCb-2875Q9DCB3 74 aa12.92□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Gm10073E9Q3T0 114 aa12.91□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Lcn2P11672 200 aa12.91□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Fbln5Q9WVH9 448 aa12.91□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Ighv7-3A0A075B5R2 120 aa12.91□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Gm6812B1AXU1 112 aa12.91□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 1700020N15RikL7MTX3 112 aa12.91□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Gata2O09100 480 aa12.91□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Olfr1336Q8VGH5 314 aa12.91□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 AmtnQ9D3J8 213 aa12.91□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 1700084M14RikB1AT01 78 aa12.91□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Frrs1lB1AXV0 293 aa12.91□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Q9DAZ5 108 aa12.91□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Lrrk1Q3UHC2 2014 aa12.91□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Trav7-4A0A075B6C1 113 aa12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Ighv9-3A0A0B4J1J5 117 aa12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Cd59aO55186 123 aa12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 ApohQ01339 345 aa12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Trav7d-4Q5R1H9 113 aa12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Ypel2Q65Z95 119 aa12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Srsf7Q8BL97 267 aaKnown RBP12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Cox19Q8K0C8 92 aa12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Gatad1Q920S3 266 aa12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Cd200r1Q9ES57 326 aa12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Ypel1Q9ESC7 118 aa12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Rp1l1Q8CGM2 1859 aa12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Myo9bQ9QY06 2114 aa12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 CrxO54751 299 aa12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Cd81P35762 236 aa12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Gstp2P46425 210 aa12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Folr2Q05685 251 aa12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Trav15-1-dv6-1Q5R1D2 117 aa12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Tbr1Q64336 681 aa12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Spink6Q8BT20 105 aa12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Slc16a4Q8R0M8 500 aa12.9□□□□□ -0.34
Ccdc88b-201ENSMUST00000113440 Bsph1Q3UW26 133 aa12.89□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Ptprz1B9EKR1 2312 aa12.89□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Sdk2Q6V4S5 2176 aa12.89□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Tcrg-C2A0A075B5Z2 167 aa12.89□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 eef1akmt3D3YWP0 232 aa12.89□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 P01853 167 aa12.89□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Neurog3P70661 214 aa12.89□□□□□ -0.35
Ccdc88b-201ENSMUST00000113440 Dock10Q8BZN6 2150 aa12.89□□□□□ -0.35
Retrieved 100 of 22,080 RNA–protein pairs in 62.6 ms