Protein–RNA interactions for Protein: E9Q2N0

Cpsf4l, Cleavage and polyadenylation-specific factor 4-like, mousemouse

Predictions only

Length 280 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf4lE9Q2N0 Gm25239-201ENSMUST00000174915 86 ntBASIC31,58■■■□□ 2,65
Cpsf4lE9Q2N0 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC29,08■■■□□ 2,25
Cpsf4lE9Q2N0 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC29,03■■■□□ 2,24
Cpsf4lE9Q2N0 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC28,66■■■□□ 2,18
Cpsf4lE9Q2N0 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC28,34■■■□□ 2,13
Cpsf4lE9Q2N0 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC28,09■■■□□ 2,09
Cpsf4lE9Q2N0 Gm15042-201ENSMUST00000120212 883 ntBASIC27,95■■■□□ 2,06
Cpsf4lE9Q2N0 Gm15045-201ENSMUST00000117359 883 ntBASIC27,41■■□□□ 1,98
Cpsf4lE9Q2N0 Gm24109-201ENSMUST00000175489 103 ntBASIC27,22■■□□□ 1,95
Cpsf4lE9Q2N0 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC27,15■■□□□ 1,94
Cpsf4lE9Q2N0 Psd-208ENSMUST00000224556 2034 ntBASIC26,97■■□□□ 1,91
Cpsf4lE9Q2N0 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC26,96■■□□□ 1,91
Cpsf4lE9Q2N0 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC26,69■■□□□ 1,86
Cpsf4lE9Q2N0 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC26,63■■□□□ 1,85
Cpsf4lE9Q2N0 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC26,6■■□□□ 1,85
Cpsf4lE9Q2N0 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC26,54■■□□□ 1,84
Cpsf4lE9Q2N0 Gm23366-201ENSMUST00000175022 89 ntBASIC26,41■■□□□ 1,82
Cpsf4lE9Q2N0 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC26,34■■□□□ 1,81
Cpsf4lE9Q2N0 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26,27■■□□□ 1,8
Cpsf4lE9Q2N0 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC26,26■■□□□ 1,79
Cpsf4lE9Q2N0 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC26,24■■□□□ 1,79
Cpsf4lE9Q2N0 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC26,17■■□□□ 1,78
Cpsf4lE9Q2N0 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC26,12■■□□□ 1,77
Cpsf4lE9Q2N0 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC26,09■■□□□ 1,77
Cpsf4lE9Q2N0 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC26,04■■□□□ 1,76
Cpsf4lE9Q2N0 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC26,04■■□□□ 1,76
Cpsf4lE9Q2N0 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC26,01■■□□□ 1,75
Cpsf4lE9Q2N0 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC25,99■■□□□ 1,75
Cpsf4lE9Q2N0 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC25,95■■□□□ 1,74
Cpsf4lE9Q2N0 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC25,87■■□□□ 1,73
Cpsf4lE9Q2N0 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC25,72■■□□□ 1,71
Cpsf4lE9Q2N0 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC25,69■■□□□ 1,7
Cpsf4lE9Q2N0 AC153911.1-202ENSMUST00000218534 1034 ntBASIC25,67■■□□□ 1,7
Cpsf4lE9Q2N0 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC25,61■■□□□ 1,69
Cpsf4lE9Q2N0 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC25,59■■□□□ 1,69
Cpsf4lE9Q2N0 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC25,44■■□□□ 1,66
Cpsf4lE9Q2N0 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC25,43■■□□□ 1,66
Cpsf4lE9Q2N0 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC25,35■■□□□ 1,65
Cpsf4lE9Q2N0 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC25,31■■□□□ 1,64
Cpsf4lE9Q2N0 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC25,21■■□□□ 1,63
Cpsf4lE9Q2N0 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC25,19■■□□□ 1,62
Cpsf4lE9Q2N0 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC25,17■■□□□ 1,62
Cpsf4lE9Q2N0 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC25■■□□□ 1,59
Cpsf4lE9Q2N0 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC24,99■■□□□ 1,59
Cpsf4lE9Q2N0 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC24,95■■□□□ 1,58
Cpsf4lE9Q2N0 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC24,93■■□□□ 1,58
Cpsf4lE9Q2N0 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC24,9■■□□□ 1,58
Cpsf4lE9Q2N0 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC24,88■■□□□ 1,57
Cpsf4lE9Q2N0 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC24,88■■□□□ 1,57
Cpsf4lE9Q2N0 Gm10524-201ENSMUST00000181931 1893 ntBASIC24,87■■□□□ 1,57
Cpsf4lE9Q2N0 Gm25238-201ENSMUST00000174914 89 ntBASIC24,82■■□□□ 1,56
Cpsf4lE9Q2N0 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC24,82■■□□□ 1,56
Cpsf4lE9Q2N0 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC24,8■■□□□ 1,56
Cpsf4lE9Q2N0 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC24,74■■□□□ 1,55
Cpsf4lE9Q2N0 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC24,73■■□□□ 1,55
Cpsf4lE9Q2N0 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC24,71■■□□□ 1,55
Cpsf4lE9Q2N0 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC24,7■■□□□ 1,54
Cpsf4lE9Q2N0 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC24,68■■□□□ 1,54
Cpsf4lE9Q2N0 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC24,61■■□□□ 1,53
Cpsf4lE9Q2N0 Gm27325-201ENSMUST00000175467 74 ntBASIC24,57■■□□□ 1,52
Cpsf4lE9Q2N0 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC24,52■■□□□ 1,52
Cpsf4lE9Q2N0 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC24,49■■□□□ 1,51
Cpsf4lE9Q2N0 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC24,49■■□□□ 1,51
Cpsf4lE9Q2N0 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC24,47■■□□□ 1,51
Cpsf4lE9Q2N0 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC24,45■■□□□ 1,5
Cpsf4lE9Q2N0 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC24,44■■□□□ 1,5
Cpsf4lE9Q2N0 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC24,43■■□□□ 1,5
Cpsf4lE9Q2N0 CT025624.2-201ENSMUST00000223609 1909 ntBASIC24,43■■□□□ 1,5
Cpsf4lE9Q2N0 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC24,43■■□□□ 1,5
Cpsf4lE9Q2N0 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC24,39■■□□□ 1,5
Cpsf4lE9Q2N0 Gm42596-201ENSMUST00000196305 1958 ntBASIC24,36■■□□□ 1,49
Cpsf4lE9Q2N0 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC24,34■■□□□ 1,49
Cpsf4lE9Q2N0 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC24,33■■□□□ 1,49
Cpsf4lE9Q2N0 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC24,27■■□□□ 1,48
Cpsf4lE9Q2N0 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC24,27■■□□□ 1,48
Cpsf4lE9Q2N0 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC24,22■■□□□ 1,47
Cpsf4lE9Q2N0 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC24,12■■□□□ 1,45
Cpsf4lE9Q2N0 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC24,1■■□□□ 1,45
Cpsf4lE9Q2N0 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC24,1■■□□□ 1,45
Cpsf4lE9Q2N0 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC24,06■■□□□ 1,44
Cpsf4lE9Q2N0 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC24,03■■□□□ 1,44
Cpsf4lE9Q2N0 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC24,01■■□□□ 1,43
Cpsf4lE9Q2N0 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1,43
Cpsf4lE9Q2N0 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC23,96■■□□□ 1,43
Cpsf4lE9Q2N0 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC23,92■■□□□ 1,42
Cpsf4lE9Q2N0 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC23,91■■□□□ 1,42
Cpsf4lE9Q2N0 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC23,9■■□□□ 1,42
Cpsf4lE9Q2N0 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC23,89■■□□□ 1,41
Cpsf4lE9Q2N0 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC23,89■■□□□ 1,41
Cpsf4lE9Q2N0 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC23,88■■□□□ 1,41
Cpsf4lE9Q2N0 Rab21-202ENSMUST00000218831 843 ntBASIC23,87■■□□□ 1,41
Cpsf4lE9Q2N0 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC23,85■■□□□ 1,41
Cpsf4lE9Q2N0 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC23,81■■□□□ 1,4
Cpsf4lE9Q2N0 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC23,81■■□□□ 1,4
Cpsf4lE9Q2N0 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC23,76■■□□□ 1,39
Cpsf4lE9Q2N0 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC23,74■■□□□ 1,39
Cpsf4lE9Q2N0 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC23,74■■□□□ 1,39
Cpsf4lE9Q2N0 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC23,72■■□□□ 1,39
Cpsf4lE9Q2N0 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC23,71■■□□□ 1,39
Cpsf4lE9Q2N0 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC23,71■■□□□ 1,39
Retrieved 100 of 76,532 protein–RNA pairs in 29,2 ms