Protein–RNA interactions for Protein: A0A075B653

Trav16, T cell receptor alpha variable 16 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16A0A075B653 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Trav16A0A075B653 Gm25239-201ENSMUST00000174915 86 ntBASIC25.77■■□□□ 1.72
Trav16A0A075B653 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC25.38■■□□□ 1.65
Trav16A0A075B653 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Trav16A0A075B653 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Trav16A0A075B653 Psd-208ENSMUST00000224556 2034 ntBASIC24.64■■□□□ 1.53
Trav16A0A075B653 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Trav16A0A075B653 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
Trav16A0A075B653 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
Trav16A0A075B653 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Trav16A0A075B653 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Trav16A0A075B653 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Trav16A0A075B653 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Trav16A0A075B653 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Trav16A0A075B653 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC23.31■■□□□ 1.32
Trav16A0A075B653 Gm15042-201ENSMUST00000120212 883 ntBASIC23.31■■□□□ 1.32
Trav16A0A075B653 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Trav16A0A075B653 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Trav16A0A075B653 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
Trav16A0A075B653 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Trav16A0A075B653 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Trav16A0A075B653 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
Trav16A0A075B653 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Trav16A0A075B653 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
Trav16A0A075B653 Gm15045-201ENSMUST00000117359 883 ntBASIC22.89■■□□□ 1.25
Trav16A0A075B653 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Trav16A0A075B653 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Trav16A0A075B653 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
Trav16A0A075B653 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Trav16A0A075B653 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Trav16A0A075B653 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC22.56■■□□□ 1.2
Trav16A0A075B653 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trav16A0A075B653 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trav16A0A075B653 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC22.51■■□□□ 1.19
Trav16A0A075B653 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
Trav16A0A075B653 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC22.49■■□□□ 1.19
Trav16A0A075B653 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Trav16A0A075B653 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Trav16A0A075B653 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Trav16A0A075B653 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
Trav16A0A075B653 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Trav16A0A075B653 Gm42596-201ENSMUST00000196305 1958 ntBASIC22.31■■□□□ 1.16
Trav16A0A075B653 Gm10524-201ENSMUST00000181931 1893 ntBASIC22.3■■□□□ 1.16
Trav16A0A075B653 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trav16A0A075B653 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Trav16A0A075B653 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Trav16A0A075B653 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC22.14■■□□□ 1.13
Trav16A0A075B653 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC22.13■■□□□ 1.13
Trav16A0A075B653 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Trav16A0A075B653 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Trav16A0A075B653 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Trav16A0A075B653 Gm24109-201ENSMUST00000175489 103 ntBASIC21.95■■□□□ 1.1
Trav16A0A075B653 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Trav16A0A075B653 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.84■■□□□ 1.09
Trav16A0A075B653 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
Trav16A0A075B653 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trav16A0A075B653 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Trav16A0A075B653 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trav16A0A075B653 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trav16A0A075B653 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trav16A0A075B653 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Trav16A0A075B653 Gm23366-201ENSMUST00000175022 89 ntBASIC21.66■■□□□ 1.06
Trav16A0A075B653 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trav16A0A075B653 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trav16A0A075B653 CT025624.2-201ENSMUST00000223609 1909 ntBASIC21.62■■□□□ 1.05
Trav16A0A075B653 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
Trav16A0A075B653 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Trav16A0A075B653 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Trav16A0A075B653 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trav16A0A075B653 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Trav16A0A075B653 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
Trav16A0A075B653 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trav16A0A075B653 AC153911.1-202ENSMUST00000218534 1034 ntBASIC21.43■■□□□ 1.02
Trav16A0A075B653 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Trav16A0A075B653 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Trav16A0A075B653 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
Trav16A0A075B653 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Trav16A0A075B653 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Trav16A0A075B653 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Trav16A0A075B653 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trav16A0A075B653 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Trav16A0A075B653 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Trav16A0A075B653 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trav16A0A075B653 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trav16A0A075B653 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trav16A0A075B653 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trav16A0A075B653 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Trav16A0A075B653 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trav16A0A075B653 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trav16A0A075B653 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trav16A0A075B653 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trav16A0A075B653 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21.14■□□□□ 0.98
Trav16A0A075B653 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
Trav16A0A075B653 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC21.1■□□□□ 0.97
Trav16A0A075B653 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trav16A0A075B653 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC21.03■□□□□ 0.96
Trav16A0A075B653 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Trav16A0A075B653 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trav16A0A075B653 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trav16A0A075B653 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms