Protein–RNA interactions for Protein: Q8CGM2

Rp1l1, Retinitis pigmentosa 1-like 1 protein, mousemouse

Predictions only

Length 1,859 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rp1l1Q8CGM2 Gm25239-201ENSMUST00000174915 86 ntBASIC42.92■■■■■ 4.46
Rp1l1Q8CGM2 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC40.07■■■■■ 4
Rp1l1Q8CGM2 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC39.1■■■■□ 3.85
Rp1l1Q8CGM2 Gm24109-201ENSMUST00000175489 103 ntBASIC37.59■■■■□ 3.61
Rp1l1Q8CGM2 Gm15042-201ENSMUST00000120212 883 ntBASIC37.03■■■■□ 3.52
Rp1l1Q8CGM2 Gm15045-201ENSMUST00000117359 883 ntBASIC36.37■■■■□ 3.41
Rp1l1Q8CGM2 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC36.33■■■■□ 3.41
Rp1l1Q8CGM2 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC36.14■■■■□ 3.38
Rp1l1Q8CGM2 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC36.05■■■■□ 3.36
Rp1l1Q8CGM2 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC36.03■■■■□ 3.36
Rp1l1Q8CGM2 Gm23366-201ENSMUST00000175022 89 ntBASIC35.68■■■■□ 3.3
Rp1l1Q8CGM2 AC153911.1-202ENSMUST00000218534 1034 ntBASIC35.16■■■■□ 3.22
Rp1l1Q8CGM2 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC34.75■■■■□ 3.15
Rp1l1Q8CGM2 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC34.67■■■■□ 3.14
Rp1l1Q8CGM2 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
Rp1l1Q8CGM2 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC34.46■■■■□ 3.11
Rp1l1Q8CGM2 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC34.46■■■■□ 3.11
Rp1l1Q8CGM2 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
Rp1l1Q8CGM2 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC34.24■■■■□ 3.07
Rp1l1Q8CGM2 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC34.08■■■■□ 3.05
Rp1l1Q8CGM2 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.04
Rp1l1Q8CGM2 Gm25238-201ENSMUST00000174914 89 ntBASIC34.05■■■■□ 3.04
Rp1l1Q8CGM2 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC34.01■■■■□ 3.03
Rp1l1Q8CGM2 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
Rp1l1Q8CGM2 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC33.5■■■□□ 2.95
Rp1l1Q8CGM2 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC33.33■■■□□ 2.93
Rp1l1Q8CGM2 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
Rp1l1Q8CGM2 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC33.27■■■□□ 2.92
Rp1l1Q8CGM2 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC33.18■■■□□ 2.9
Rp1l1Q8CGM2 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC33.09■■■□□ 2.89
Rp1l1Q8CGM2 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC33.05■■■□□ 2.88
Rp1l1Q8CGM2 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC33■■■□□ 2.87
Rp1l1Q8CGM2 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC32.99■■■□□ 2.87
Rp1l1Q8CGM2 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
Rp1l1Q8CGM2 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC32.87■■■□□ 2.85
Rp1l1Q8CGM2 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.85■■■□□ 2.85
Rp1l1Q8CGM2 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.82■■■□□ 2.84
Rp1l1Q8CGM2 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC32.73■■■□□ 2.83
Rp1l1Q8CGM2 Gm25262-201ENSMUST00000174934 133 ntBASIC32.65■■■□□ 2.82
Rp1l1Q8CGM2 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
Rp1l1Q8CGM2 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC32.44■■■□□ 2.78
Rp1l1Q8CGM2 Gm27325-201ENSMUST00000175467 74 ntBASIC32.37■■■□□ 2.77
Rp1l1Q8CGM2 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
Rp1l1Q8CGM2 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC32.31■■■□□ 2.76
Rp1l1Q8CGM2 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC32.29■■■□□ 2.76
Rp1l1Q8CGM2 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC32.22■■■□□ 2.75
Rp1l1Q8CGM2 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
Rp1l1Q8CGM2 Gm26115-201ENSMUST00000175605 87 ntBASIC32.12■■■□□ 2.73
Rp1l1Q8CGM2 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC32.08■■■□□ 2.73
Rp1l1Q8CGM2 Gm8109-201ENSMUST00000194076 746 ntBASIC32.06■■■□□ 2.72
Rp1l1Q8CGM2 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
Rp1l1Q8CGM2 Rab21-202ENSMUST00000218831 843 ntBASIC32.03■■■□□ 2.72
Rp1l1Q8CGM2 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC32.02■■■□□ 2.72
Rp1l1Q8CGM2 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
Rp1l1Q8CGM2 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.95■■■□□ 2.71
Rp1l1Q8CGM2 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC31.93■■■□□ 2.7
Rp1l1Q8CGM2 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC31.83■■■□□ 2.69
Rp1l1Q8CGM2 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.69
Rp1l1Q8CGM2 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC31.81■■■□□ 2.68
Rp1l1Q8CGM2 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
Rp1l1Q8CGM2 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
Rp1l1Q8CGM2 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
Rp1l1Q8CGM2 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC31.57■■■□□ 2.65
Rp1l1Q8CGM2 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC31.54■■■□□ 2.64
Rp1l1Q8CGM2 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
Rp1l1Q8CGM2 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC31.51■■■□□ 2.63
Rp1l1Q8CGM2 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC31.38■■■□□ 2.61
Rp1l1Q8CGM2 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC31.29■■■□□ 2.6
Rp1l1Q8CGM2 Psd-208ENSMUST00000224556 2034 ntBASIC31.28■■■□□ 2.6
Rp1l1Q8CGM2 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
Rp1l1Q8CGM2 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC31.26■■■□□ 2.59
Rp1l1Q8CGM2 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
Rp1l1Q8CGM2 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC31.21■■■□□ 2.59
Rp1l1Q8CGM2 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
Rp1l1Q8CGM2 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
Rp1l1Q8CGM2 Gm17082-201ENSMUST00000166043 1091 ntBASIC31.14■■■□□ 2.58
Rp1l1Q8CGM2 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC31.06■■■□□ 2.56
Rp1l1Q8CGM2 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
Rp1l1Q8CGM2 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC31.06■■■□□ 2.56
Rp1l1Q8CGM2 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
Rp1l1Q8CGM2 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC30.97■■■□□ 2.55
Rp1l1Q8CGM2 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
Rp1l1Q8CGM2 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
Rp1l1Q8CGM2 Gm24804-201ENSMUST00000174982 85 ntBASIC30.86■■■□□ 2.53
Rp1l1Q8CGM2 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC30.82■■■□□ 2.52
Rp1l1Q8CGM2 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC30.8■■■□□ 2.52
Rp1l1Q8CGM2 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC30.73■■■□□ 2.51
Rp1l1Q8CGM2 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC30.72■■■□□ 2.51
Rp1l1Q8CGM2 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC30.71■■■□□ 2.51
Rp1l1Q8CGM2 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC30.7■■■□□ 2.51
Rp1l1Q8CGM2 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
Rp1l1Q8CGM2 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
Rp1l1Q8CGM2 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
Rp1l1Q8CGM2 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC30.6■■■□□ 2.49
Rp1l1Q8CGM2 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
Rp1l1Q8CGM2 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
Rp1l1Q8CGM2 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
Rp1l1Q8CGM2 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
Rp1l1Q8CGM2 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
Rp1l1Q8CGM2 Gm27322-201ENSMUST00000184007 104 ntBASIC30.52■■■□□ 2.48
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms