RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 CCL18P55774 89 aa9.58□□□□□ -0.88
SHKBP1-218ENST00000598907 DAD1P61803 113 aa9.58□□□□□ -0.88
SHKBP1-218ENST00000598907 TWIST1Q15672 202 aa9.58□□□□□ -0.88
SHKBP1-218ENST00000598907 CFAP126Q5VTH2 177 aa9.58□□□□□ -0.88
SHKBP1-218ENST00000598907 UFSP1Q6NVU6 142 aa9.58□□□□□ -0.88
SHKBP1-218ENST00000598907 GATD1Q8NB37 220 aa9.58□□□□□ -0.88
SHKBP1-218ENST00000598907 BORCS7Q96B45 105 aa9.58□□□□□ -0.88
SHKBP1-218ENST00000598907 JPT2Q9H910 190 aa9.58□□□□□ -0.88
SHKBP1-218ENST00000598907 URGCP-MRPS24S4R325 110 aa9.58□□□□□ -0.88
SHKBP1-218ENST00000598907 TRBV24-1A0A075B6N3 115 aa9.57□□□□□ -0.88
SHKBP1-218ENST00000598907 TRAV4A0A0B4J268 109 aa9.57□□□□□ -0.88
SHKBP1-218ENST00000598907 DEFB130BP0DP73 79 aa9.57□□□□□ -0.88
SHKBP1-218ENST00000598907 DEFB130AP0DP74 79 aa9.57□□□□□ -0.88
SHKBP1-218ENST00000598907 LINC00315P59091 139 aa9.57□□□□□ -0.88
SHKBP1-218ENST00000598907 KRTAP10-1P60331 282 aa9.57□□□□□ -0.88
SHKBP1-218ENST00000598907 SSTP61278 116 aa9.57□□□□□ -0.88
SHKBP1-218ENST00000598907 TTC32Q5I0X7 151 aa9.57□□□□□ -0.88
SHKBP1-218ENST00000598907 CBLN2Q8IUK8 224 aa9.57□□□□□ -0.88
SHKBP1-218ENST00000598907 SAMD10Q9BYL1 202 aa9.57□□□□□ -0.88
SHKBP1-218ENST00000598907 CIDEAO60543 219 aa9.56□□□□□ -0.88
SHKBP1-218ENST00000598907 SCO1O75880 301 aa9.56□□□□□ -0.88
SHKBP1-218ENST00000598907 TRGC1P0CF51 173 aa9.56□□□□□ -0.88
SHKBP1-218ENST00000598907 HBBP68871 147 aa9.56□□□□□ -0.88
SHKBP1-218ENST00000598907 MRPL54Q6P161 138 aaKnown RBP9.56□□□□□ -0.88
SHKBP1-218ENST00000598907 RASL11AQ6T310 242 aa9.56□□□□□ -0.88
SHKBP1-218ENST00000598907 AP1S3Q96PC3 154 aa9.56□□□□□ -0.88
SHKBP1-218ENST00000598907 TMEM191AQ9H0A3 160 aa9.56□□□□□ -0.88
SHKBP1-218ENST00000598907 RNF213Q63HN8 5207 aa9.55□□□□□ -0.88
SHKBP1-218ENST00000598907 TRGV2A0A075B6R0 118 aa9.55□□□□□ -0.88
SHKBP1-218ENST00000598907 TGIF2-C20orf24A0A0A6YYL0 155 aa9.55□□□□□ -0.88
SHKBP1-218ENST00000598907 EVI2AP22794 236 aa9.55□□□□□ -0.88
SHKBP1-218ENST00000598907 ZFP2Q6ZN57 461 aa9.55□□□□□ -0.88
SHKBP1-218ENST00000598907 OR4C5Q8NGB2 326 aa9.55□□□□□ -0.88
SHKBP1-218ENST00000598907 ZNF479Q96JC4 524 aa9.55□□□□□ -0.88
SHKBP1-218ENST00000598907 Q9H8V8 135 aa9.55□□□□□ -0.88
SHKBP1-218ENST00000598907 KRTAP29-1A8MX34 341 aaPredicted RBP9.54□□□□□ -0.88
SHKBP1-218ENST00000598907 S100A8P05109 93 aa9.54□□□□□ -0.88
SHKBP1-218ENST00000598907 CAMPP49913 170 aa9.54□□□□□ -0.88
SHKBP1-218ENST00000598907 C14orf178Q8N769 122 aaPredicted RBP9.54□□□□□ -0.88
SHKBP1-218ENST00000598907 DPH3P1Q9H4G8 78 aa9.54□□□□□ -0.88
SHKBP1-218ENST00000598907 PGPEP1Q9NXJ5 209 aa9.54□□□□□ -0.88
SHKBP1-218ENST00000598907 A0A087WWL8 130 aa9.53□□□□□ -0.88
SHKBP1-218ENST00000598907 F5H768 121 aa9.53□□□□□ -0.88
SHKBP1-218ENST00000598907 RHODO00212 210 aa9.53□□□□□ -0.88
SHKBP1-218ENST00000598907 ATP5G1P05496 136 aa9.53□□□□□ -0.88
SHKBP1-218ENST00000598907 FHL2Q14192 279 aa9.53□□□□□ -0.88
SHKBP1-218ENST00000598907 RNF185Q96GF1 192 aa9.53□□□□□ -0.88
SHKBP1-218ENST00000598907 COLCA2A8K830 154 aa9.52□□□□□ -0.89
SHKBP1-218ENST00000598907 IGHV3-53P01767 116 aa9.52□□□□□ -0.89
SHKBP1-218ENST00000598907 HOXA5P20719 270 aa9.52□□□□□ -0.89
SHKBP1-218ENST00000598907 COX19Q49B96 90 aa9.52□□□□□ -0.89
SHKBP1-218ENST00000598907 CDPF1Q6NVV7 123 aa9.52□□□□□ -0.89
SHKBP1-218ENST00000598907 TMEM136Q6ZRR5 245 aa9.52□□□□□ -0.89
SHKBP1-218ENST00000598907 SMIM15Q7Z3B0 74 aa9.52□□□□□ -0.89
SHKBP1-218ENST00000598907 EREGO14944 169 aa9.51□□□□□ -0.89
SHKBP1-218ENST00000598907 SMIM17P0DL12 118 aa9.51□□□□□ -0.89
SHKBP1-218ENST00000598907 GATA1P15976 413 aaPredicted RBP9.51□□□□□ -0.89
SHKBP1-218ENST00000598907 RAB4AP20338 218 aa9.51□□□□□ -0.89
SHKBP1-218ENST00000598907 RAB4BP61018 213 aa9.51□□□□□ -0.89
SHKBP1-218ENST00000598907 FAM104BQ5XKR9 115 aa9.51□□□□□ -0.89
SHKBP1-218ENST00000598907 GNB1LQ9BYB4 327 aa9.51□□□□□ -0.89
SHKBP1-218ENST00000598907 IGHV3-73A0A0B4J1V6 119 aa9.5□□□□□ -0.89
SHKBP1-218ENST00000598907 FAM74A4Q5TZK3 123 aa9.5□□□□□ -0.89
SHKBP1-218ENST00000598907 AMN1Q8IY45 258 aa9.5□□□□□ -0.89
SHKBP1-218ENST00000598907 DNAH10OSP0CZ25 163 aa9.49□□□□□ -0.89
SHKBP1-218ENST00000598907 TRGV4A0A0C4DH28 118 aa9.48□□□□□ -0.89
SHKBP1-218ENST00000598907 TRBV6-4A0A1B0GX49 114 aa9.48□□□□□ -0.89
SHKBP1-218ENST00000598907 HLA-DQA1P01909 254 aa9.48□□□□□ -0.89
SHKBP1-218ENST00000598907 MT-ND6P03923 174 aa9.48□□□□□ -0.89
SHKBP1-218ENST00000598907 CRYBA4P53673 196 aa9.48□□□□□ -0.89
SHKBP1-218ENST00000598907 SLAQ13239 276 aa9.48□□□□□ -0.89
SHKBP1-218ENST00000598907 MRPL51Q4U2R6 128 aaKnown RBP9.48□□□□□ -0.89
SHKBP1-218ENST00000598907 SUMO4Q6EEV6 95 aa9.48□□□□□ -0.89
SHKBP1-218ENST00000598907 PRO0255Q9UI72 69 aa9.48□□□□□ -0.89
SHKBP1-218ENST00000598907 HHLA3Q9XRX5 114 aa9.48□□□□□ -0.89
SHKBP1-218ENST00000598907 LRP1Q07954 4544 aaKnown RBP9.47□□□□□ -0.89
SHKBP1-218ENST00000598907 M0QY20 66 aa9.47□□□□□ -0.89
SHKBP1-218ENST00000598907 MGPP08493 103 aa9.47□□□□□ -0.89
SHKBP1-218ENST00000598907 ZNF56Q15929 161 aa9.47□□□□□ -0.89
SHKBP1-218ENST00000598907 Q6ZRN7 208 aaPredicted RBP9.47□□□□□ -0.89
SHKBP1-218ENST00000598907 SLC25A29Q8N8R3 303 aa9.47□□□□□ -0.89
SHKBP1-218ENST00000598907 MRAP2Q96G30 205 aa9.47□□□□□ -0.89
SHKBP1-218ENST00000598907 VSIG2Q96IQ7 327 aa9.47□□□□□ -0.89
SHKBP1-218ENST00000598907 F5H697 171 aa9.46□□□□□ -0.9
SHKBP1-218ENST00000598907 RAB5AP20339 215 aa9.46□□□□□ -0.9
SHKBP1-218ENST00000598907 TRAV26-2A0A0B4J265 109 aa9.45□□□□□ -0.9
SHKBP1-218ENST00000598907 TRBV10-1A0A0K0K1A3 114 aa9.45□□□□□ -0.9
SHKBP1-218ENST00000598907 H3BNG1 76 aa9.45□□□□□ -0.9
SHKBP1-218ENST00000598907 K7EQD1 137 aa9.45□□□□□ -0.9
SHKBP1-218ENST00000598907 GAS8-AS1O95177 125 aa9.45□□□□□ -0.9
SHKBP1-218ENST00000598907 APCSP02743 223 aa9.45□□□□□ -0.9
SHKBP1-218ENST00000598907 MRPL18Q9H0U6 180 aaKnown RBP9.45□□□□□ -0.9
SHKBP1-218ENST00000598907 Q9UF83 564 aa9.45□□□□□ -0.9
SHKBP1-218ENST00000598907 TRAV26-1A0A087WT03 109 aa9.44□□□□□ -0.9
SHKBP1-218ENST00000598907 H7C1H1 209 aa9.44□□□□□ -0.9
SHKBP1-218ENST00000598907 PPBPP02775 128 aa9.44□□□□□ -0.9
SHKBP1-218ENST00000598907 GCSHP23434 173 aa9.44□□□□□ -0.9
SHKBP1-218ENST00000598907 RHOHQ15669 191 aa9.44□□□□□ -0.9
SHKBP1-218ENST00000598907 NRACQ8N912 160 aa9.44□□□□□ -0.9
SHKBP1-218ENST00000598907 TRAPPC1Q9Y5R8 145 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms