RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 IGHV3-33P01772 117 aa10.82□□□□□ -0.68
TRIM28-213ENST00000598355 IGHV3-30-3P0DP02 117 aa10.82□□□□□ -0.68
TRIM28-213ENST00000598355 IGHV3-30-5P0DP03 117 aa10.82□□□□□ -0.68
TRIM28-213ENST00000598355 CHCHD7Q9BUK0 85 aa10.82□□□□□ -0.68
TRIM28-213ENST00000598355 HERC2O95714 4834 aa10.82□□□□□ -0.68
TRIM28-213ENST00000598355 TRBV6-8A0A0A6YYG3 113 aa10.81□□□□□ -0.68
TRIM28-213ENST00000598355 F5H697 171 aa10.81□□□□□ -0.68
TRIM28-213ENST00000598355 KRTAP10-2P60368 255 aa10.81□□□□□ -0.68
TRIM28-213ENST00000598355 SRSF3P84103 164 aaKnown RBP10.81□□□□□ -0.68
TRIM28-213ENST00000598355 FAM74A3Q4VXF1 159 aa10.81□□□□□ -0.68
TRIM28-213ENST00000598355 SUMO4Q6EEV6 95 aa10.81□□□□□ -0.68
TRIM28-213ENST00000598355 OSTCQ9NRP0 149 aa10.81□□□□□ -0.68
TRIM28-213ENST00000598355 LRP1BQ9NZR2 4599 aa10.81□□□□□ -0.68
TRIM28-213ENST00000598355 H7C1H1 209 aa10.8□□□□□ -0.68
TRIM28-213ENST00000598355 MGPP08493 103 aa10.8□□□□□ -0.68
TRIM28-213ENST00000598355 ERVFC1-1P60608 527 aa10.8□□□□□ -0.68
TRIM28-213ENST00000598355 SPATA12Q7Z6I5 190 aa10.8□□□□□ -0.68
TRIM28-213ENST00000598355 DAZ4Q86SG3 579 aaKnown RBP10.8□□□□□ -0.68
TRIM28-213ENST00000598355 DNAJC30Q96LL9 226 aa10.8□□□□□ -0.68
TRIM28-213ENST00000598355 GFRA4Q9GZZ7 299 aa10.8□□□□□ -0.68
TRIM28-213ENST00000598355 DAZ3Q9NR90 486 aaKnown RBP10.8□□□□□ -0.68
TRIM28-213ENST00000598355 A0A087WTM6 91 aa10.79□□□□□ -0.68
TRIM28-213ENST00000598355 FAM231BA6NCW3 169 aa10.79□□□□□ -0.68
TRIM28-213ENST00000598355 NTM-AS1Q6ZSK4 140 aa10.79□□□□□ -0.68
TRIM28-213ENST00000598355 TSKUQ8WUA8 353 aa10.79□□□□□ -0.68
TRIM28-213ENST00000598355 ISOC2Q96AB3 205 aa10.79□□□□□ -0.68
TRIM28-213ENST00000598355 DNAH5Q8TE73 4624 aa10.79□□□□□ -0.68
TRIM28-213ENST00000598355 C16orf90A8MZG2 172 aa10.78□□□□□ -0.68
TRIM28-213ENST00000598355 RPL23P62829 140 aaKnown RBP10.78□□□□□ -0.68
TRIM28-213ENST00000598355 PEA15Q15121 130 aa10.78□□□□□ -0.68
TRIM28-213ENST00000598355 TMEM97Q5BJF2 176 aa10.78□□□□□ -0.68
TRIM28-213ENST00000598355 RASL11AQ6T310 242 aa10.78□□□□□ -0.68
TRIM28-213ENST00000598355 V9GYV3 84 aa10.78□□□□□ -0.68
TRIM28-213ENST00000598355 LRCOL1A6NCL2 159 aa10.77□□□□□ -0.69
TRIM28-213ENST00000598355 TWIST1Q15672 202 aa10.77□□□□□ -0.69
TRIM28-213ENST00000598355 TMEM241Q24JQ0 296 aa10.77□□□□□ -0.69
TRIM28-213ENST00000598355 FRZBQ92765 325 aa10.77□□□□□ -0.69
TRIM28-213ENST00000598355 TRAV8-3A0A0A6YYJ7 113 aa10.76□□□□□ -0.69
TRIM28-213ENST00000598355 HIGD1CA8MV81 97 aa10.76□□□□□ -0.69
TRIM28-213ENST00000598355 CDPF1Q6NVV7 123 aa10.76□□□□□ -0.69
TRIM28-213ENST00000598355 Q9HAA7 133 aa10.76□□□□□ -0.69
TRIM28-213ENST00000598355 NIT2Q9NQR4 276 aa10.76□□□□□ -0.69
TRIM28-213ENST00000598355 NAT8Q9UHE5 227 aa10.76□□□□□ -0.69
TRIM28-213ENST00000598355 IQCJQ1A5X6 159 aa10.75□□□□□ -0.69
TRIM28-213ENST00000598355 ATRAIDQ6UW56 229 aa10.75□□□□□ -0.69
TRIM28-213ENST00000598355 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.75□□□□□ -0.69
TRIM28-213ENST00000598355 PGLYRP4Q96LB8 373 aa10.75□□□□□ -0.69
TRIM28-213ENST00000598355 EREGO14944 169 aa10.74□□□□□ -0.69
TRIM28-213ENST00000598355 MPV17L2Q567V2 206 aa10.74□□□□□ -0.69
TRIM28-213ENST00000598355 C15orf54Q8N8G6 183 aa10.74□□□□□ -0.69
TRIM28-213ENST00000598355 GATD1Q8NB37 220 aa10.74□□□□□ -0.69
TRIM28-213ENST00000598355 URGCP-MRPS24S4R325 110 aa10.74□□□□□ -0.69
TRIM28-213ENST00000598355 HSPG2P98160 4391 aa10.73□□□□□ -0.69
TRIM28-213ENST00000598355 A0A087WX48 190 aa10.73□□□□□ -0.69
TRIM28-213ENST00000598355 A0A1B0GUT8 65 aa10.73□□□□□ -0.69
TRIM28-213ENST00000598355 CDK2AP2O75956 126 aa10.73□□□□□ -0.69
TRIM28-213ENST00000598355 PKIAP61925 76 aa10.73□□□□□ -0.69
TRIM28-213ENST00000598355 PGPEP1Q9NXJ5 209 aa10.73□□□□□ -0.69
TRIM28-213ENST00000598355 RYR1P21817 5038 aa10.73□□□□□ -0.69
TRIM28-213ENST00000598355 TRBV25-1A0A075B6N4 114 aa10.72□□□□□ -0.69
TRIM28-213ENST00000598355 PSCAO43653 123 aa10.72□□□□□ -0.69
TRIM28-213ENST00000598355 ELOBQ15370 118 aa10.72□□□□□ -0.69
TRIM28-213ENST00000598355 ADIRFQ15847 76 aa10.72□□□□□ -0.69
TRIM28-213ENST00000598355 SMIM15Q7Z3B0 74 aa10.72□□□□□ -0.69
TRIM28-213ENST00000598355 TM2D2Q9BX73 214 aa10.72□□□□□ -0.69
TRIM28-213ENST00000598355 KLK12Q9UKR0 248 aa10.72□□□□□ -0.69
TRIM28-213ENST00000598355 TRAV26-2A0A0B4J265 109 aa10.71□□□□□ -0.69
TRIM28-213ENST00000598355 IGHV1-24A0A0C4DH33 117 aa10.71□□□□□ -0.69
TRIM28-213ENST00000598355 MAPKAPK5-AS1Q8N8E1 139 aa10.71□□□□□ -0.69
TRIM28-213ENST00000598355 NUP35Q8NFH5 326 aa10.71□□□□□ -0.69
TRIM28-213ENST00000598355 TMEM191AQ9H0A3 160 aa10.71□□□□□ -0.69
TRIM28-213ENST00000598355 APOBP04114 4563 aaKnown RBP10.71□□□□□ -0.7
TRIM28-213ENST00000598355 SMIM27A0A1W2PRY6 76 aa10.7□□□□□ -0.7
TRIM28-213ENST00000598355 CLLU1Q5K131 121 aa10.7□□□□□ -0.7
TRIM28-213ENST00000598355 KCNIP4Q6PIL6 250 aa10.7□□□□□ -0.7
TRIM28-213ENST00000598355 BORCS7Q96B45 105 aa10.7□□□□□ -0.7
TRIM28-213ENST00000598355 CHCHD5Q9BSY4 110 aa10.7□□□□□ -0.7
TRIM28-213ENST00000598355 COX11Q9Y6N1 276 aa10.7□□□□□ -0.7
TRIM28-213ENST00000598355 TRBV6-5A0A0K0K1A5 114 aa10.69□□□□□ -0.7
TRIM28-213ENST00000598355 WFDC2Q14508 124 aa10.69□□□□□ -0.7
TRIM28-213ENST00000598355 ENHOQ6UWT2 76 aa10.69□□□□□ -0.7
TRIM28-213ENST00000598355 Q8N814 137 aa10.69□□□□□ -0.7
TRIM28-213ENST00000598355 NTN5Q8WTR8 489 aaPredicted RBP10.69□□□□□ -0.7
TRIM28-213ENST00000598355 RPL39LQ96EH5 51 aaKnown RBP10.69□□□□□ -0.7
TRIM28-213ENST00000598355 RNF185Q96GF1 192 aa10.69□□□□□ -0.7
TRIM28-213ENST00000598355 PRR34Q9NV39 138 aa10.69□□□□□ -0.7
TRIM28-213ENST00000598355 NAT8BQ9UHF3 227 aa10.69□□□□□ -0.7
TRIM28-213ENST00000598355 FUSP35637 526 aaKnown RBP eCLIP10.68□□□□□ -0.7
TRIM28-213ENST00000598355 RBX1P62877 108 aa10.68□□□□□ -0.7
TRIM28-213ENST00000598355 IFITM2Q01629 132 aa10.68□□□□□ -0.7
TRIM28-213ENST00000598355 Q0VG73 95 aa10.68□□□□□ -0.7
TRIM28-213ENST00000598355 Q8N976 141 aa10.68□□□□□ -0.7
TRIM28-213ENST00000598355 UBE2WQ96B02 151 aa10.68□□□□□ -0.7
TRIM28-213ENST00000598355 RMI2Q96E14 147 aa10.68□□□□□ -0.7
TRIM28-213ENST00000598355 TMEM262E9PQX1 116 aa10.67□□□□□ -0.7
TRIM28-213ENST00000598355 RAB14P61106 215 aa10.67□□□□□ -0.7
TRIM28-213ENST00000598355 TMEM243Q9BU79 118 aa10.67□□□□□ -0.7
TRIM28-213ENST00000598355 A0A1B0GUV1 79 aa10.66□□□□□ -0.7
TRIM28-213ENST00000598355 GAS8-AS1O95177 125 aa10.66□□□□□ -0.7
TRIM28-213ENST00000598355 ANGP03950 147 aaKnown RBP10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms