RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 F2Z2F3 143 aa0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 ZNF670-ZNF695F2Z2N8 137 aa0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 YPEL1O60688 119 aa0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 RBP4P02753 201 aa0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 TFF1P04155 84 aa0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 NBEAP1P0C6P0 100 aa0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 HLA-DRB4P13762 266 aa0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 CCDC153Q494R4 210 aa0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 NDUFA11Q86Y39 141 aa0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 SNX29P2Q8IUI4 249 aa0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 ATP6V0E2Q8NHE4 81 aa0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 DYNLRB2Q8TF09 96 aa0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 PRR15LQ9BU68 103 aa0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 HIGD1AQ9Y241 93 aa0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 HLA-DRB4X5D2U9 266 aa0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 PARP14Q460N5 1801 aa0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 VIRMAQ69YN4 1812 aaKnown RBP0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 F8P00451 2351 aa0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 CCDC171Q6TFL3 1326 aa0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 MYH6P13533 1939 aa0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 AKAP11Q9UKA4 1901 aa0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 KIAA0100Q14667 2235 aaKnown RBP0.05□□□□□ -2.4
SMCHD1-207ENST00000581711 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.04□□□□□ -2.46e-15■■■■■ 66.7
SMCHD1-207ENST00000581711 LAMA5O15230 3695 aa0.04□□□□□ -2.4
SMCHD1-207ENST00000581711 TCRBV3S1A0A5B6 114 aa0.04□□□□□ -2.4
SMCHD1-207ENST00000581711 RBAKDNA6NC62 111 aa0.04□□□□□ -2.4
SMCHD1-207ENST00000581711 SPINK1P00995 79 aa0.04□□□□□ -2.4
SMCHD1-207ENST00000581711 DBIP07108 87 aaKnown RBP0.04□□□□□ -2.4
SMCHD1-207ENST00000581711 SLC25A6P12236 298 aa0.04□□□□□ -2.4
SMCHD1-207ENST00000581711 ELOF1P60002 83 aaKnown RBP0.04□□□□□ -2.4
SMCHD1-207ENST00000581711 B2MP61769 119 aa0.04□□□□□ -2.4
SMCHD1-207ENST00000581711 EMX2Q04743 252 aa0.04□□□□□ -2.4
SMCHD1-207ENST00000581711 CLLU1Q5K131 121 aa0.04□□□□□ -2.4
SMCHD1-207ENST00000581711 OR2T2Q6IF00 324 aa0.04□□□□□ -2.4
SMCHD1-207ENST00000581711 CYP2G1PQ6ZSU1 146 aa0.04□□□□□ -2.4
SMCHD1-207ENST00000581711 MRPL40Q9NQ50 206 aaKnown RBP0.04□□□□□ -2.4
SMCHD1-207ENST00000581711 ERG28Q9UKR5 140 aa0.04□□□□□ -2.4
SMCHD1-207ENST00000581711 NOP16Q9Y3C1 178 aaKnown RBP0.04□□□□□ -2.4
SMCHD1-207ENST00000581711 LRBAP50851 2863 aa0.04□□□□□ -2.4
SMCHD1-207ENST00000581711 LRP2P98164 4655 aa0.04□□□□□ -2.4
SMCHD1-207ENST00000581711 ARAP1Q96P48 1450 aa0.03□□□□□ -2.4
SMCHD1-207ENST00000581711 ASXL3Q9C0F0 2248 aa0.03□□□□□ -2.4
SMCHD1-207ENST00000581711 AHCTF1Q8WYP5 2266 aa0.03□□□□□ -2.4
SMCHD1-207ENST00000581711 LAMC3Q9Y6N6 1575 aa0.03□□□□□ -2.4
SMCHD1-207ENST00000581711 WNK1Q9H4A3 2382 aa0.03□□□□□ -2.4
SMCHD1-207ENST00000581711 CCDC179H3BU77 68 aa0.03□□□□□ -2.4
SMCHD1-207ENST00000581711 J3QLW9 94 aa0.03□□□□□ -2.4
SMCHD1-207ENST00000581711 M0R2P5 195 aa0.03□□□□□ -2.4
SMCHD1-207ENST00000581711 COX6A2Q02221 97 aa0.03□□□□□ -2.4
SMCHD1-207ENST00000581711 Q5BKY6 102 aa0.03□□□□□ -2.4
SMCHD1-207ENST00000581711 ATP11AUNQ6ZP68 121 aa0.03□□□□□ -2.4
SMCHD1-207ENST00000581711 TAC4Q86UU9 113 aa0.03□□□□□ -2.4
SMCHD1-207ENST00000581711 AIF1LQ9BQI0 150 aa0.03□□□□□ -2.4
SMCHD1-207ENST00000581711 BPESC1Q9GZL8 116 aa0.03□□□□□ -2.4
SMCHD1-207ENST00000581711 MYO15AQ9UKN7 3530 aa0.03□□□□□ -2.4
SMCHD1-207ENST00000581711 CACNA1CQ13936 2221 aa0.03□□□□□ -2.4
SMCHD1-207ENST00000581711 PHIPQ8WWQ0 1821 aa0.03□□□□□ -2.4
SMCHD1-207ENST00000581711 SOGA1O94964 1423 aa0.03□□□□□ -2.41
SMCHD1-207ENST00000581711 CDK13Q14004 1512 aaKnown RBP0.03□□□□□ -2.41
SMCHD1-207ENST00000581711 FREM2Q5SZK8 3169 aa0.02□□□□□ -2.41
SMCHD1-207ENST00000581711 SRRM2Q9UQ35 2752 aaKnown RBP0.02□□□□□ -2.41
SMCHD1-207ENST00000581711 ANK2Q01484 3957 aa0.02□□□□□ -2.41
SMCHD1-207ENST00000581711 CUBNO60494 3623 aa0.02□□□□□ -2.41
SMCHD1-207ENST00000581711 ARFGEF1Q9Y6D6 1849 aa0.02□□□□□ -2.41
SMCHD1-207ENST00000581711 COX4I1P13073 169 aa0.02□□□□□ -2.41
SMCHD1-207ENST00000581711 CCL3L1P16619 93 aa0.02□□□□□ -2.41
SMCHD1-207ENST00000581711 NCS1P62166 190 aa0.02□□□□□ -2.41
SMCHD1-207ENST00000581711 DR1Q01658 176 aa0.02□□□□□ -2.41
SMCHD1-207ENST00000581711 SSBP1Q04837 148 aaKnown RBP0.02□□□□□ -2.41
SMCHD1-207ENST00000581711 MORN2Q502X0 79 aa0.02□□□□□ -2.41
SMCHD1-207ENST00000581711 C4orf33Q8N1A6 199 aa0.02□□□□□ -2.41
SMCHD1-207ENST00000581711 MMGT1Q8N4V1 131 aa0.02□□□□□ -2.41
SMCHD1-207ENST00000581711 FAM213BQ8TBF2 198 aa0.02□□□□□ -2.41
SMCHD1-207ENST00000581711 SMIM11BQ8TCY0 68 aa0.02□□□□□ -2.41
SMCHD1-207ENST00000581711 IFI27L1Q96BM0 104 aa0.02□□□□□ -2.41
SMCHD1-207ENST00000581711 LSM2Q9Y333 95 aaKnown RBP0.02□□□□□ -2.41
SMCHD1-207ENST00000581711 UNC13BO14795 1591 aa0.02□□□□□ -2.41
SMCHD1-207ENST00000581711 NRXN2Q9P2S2 1712 aa0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 CRYBG3Q68DQ2 2970 aa0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 MUC3AQ02505 3323 aa0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 TRBV20-1A0A075B6N2 111 aa0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 GVQW2A0A096LPI5 108 aaPredicted RBP0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 TRBV7-1A0A0A6YYK4 115 aa0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 APODP05090 189 aa0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 NMBP08949 121 aa0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 SCGB1A1P11684 91 aa0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 NPC2P61916 151 aa0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 SPCS2Q15005 226 aa0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 FAM74A4Q5TZK3 123 aa0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 C20orf197Q8N268 126 aa0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 COX7B2Q8TF08 81 aa0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 PYDC1Q8WXC3 89 aa0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 TMEM242Q9NWH2 141 aa0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 NIPBLQ6KC79 2804 aaeCLIP0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 PTPRMP28827 1452 aa0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 ERCC6Q03468 1493 aa0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 LRP1Q07954 4544 aaKnown RBP0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 SYNJ1O43426 1573 aa0.01□□□□□ -2.41
SMCHD1-207ENST00000581711 CSMD2Q7Z408 3487 aa0.01□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms