RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 ARMS2P0C7Q2 107 aa6.32□□□□□ -1.4
SYNE2-224ENST00000557024 GAGE12FP0CL80 117 aa6.32□□□□□ -1.4
SYNE2-224ENST00000557024 GAGE12GP0CL81 117 aa6.32□□□□□ -1.4
SYNE2-224ENST00000557024 GAGE12IP0CL82 117 aa6.32□□□□□ -1.4
SYNE2-224ENST00000557024 GZMBP10144 247 aa6.32□□□□□ -1.4
SYNE2-224ENST00000557024 S100PP25815 95 aa6.32□□□□□ -1.4
SYNE2-224ENST00000557024 LCE1DQ5T752 114 aa6.32□□□□□ -1.4
SYNE2-224ENST00000557024 KCNIP4Q6PIL6 250 aa6.32□□□□□ -1.4
SYNE2-224ENST00000557024 FER1L6-AS1Q8NA97 138 aa6.32□□□□□ -1.4
SYNE2-224ENST00000557024 RNASE8Q8TDE3 154 aaKnown RBP6.32□□□□□ -1.4
SYNE2-224ENST00000557024 TSKUQ8WUA8 353 aa6.32□□□□□ -1.4
SYNE2-224ENST00000557024 SPXQ9BT56 116 aa6.32□□□□□ -1.4
SYNE2-224ENST00000557024 TMEM70Q9BUB7 260 aa6.32□□□□□ -1.4
SYNE2-224ENST00000557024 GSN-AS1Q9NRJ2 163 aa6.32□□□□□ -1.4
SYNE2-224ENST00000557024 IL36BQ9NZH7 164 aa6.32□□□□□ -1.4
SYNE2-224ENST00000557024 PHLDA3Q9Y5J5 127 aa6.32□□□□□ -1.4
SYNE2-224ENST00000557024 V9GYV3 84 aa6.32□□□□□ -1.4
SYNE2-224ENST00000557024 A0A087WWC5 75 aa6.31□□□□□ -1.4
SYNE2-224ENST00000557024 A0A096LPF7 62 aa6.31□□□□□ -1.4
SYNE2-224ENST00000557024 IGHV3-16A0A0C4DH30 117 aa6.31□□□□□ -1.4
SYNE2-224ENST00000557024 F2Z2F3 143 aa6.31□□□□□ -1.4
SYNE2-224ENST00000557024 H3BNG1 76 aa6.31□□□□□ -1.4
SYNE2-224ENST00000557024 TCL1AP56279 114 aa6.31□□□□□ -1.4
SYNE2-224ENST00000557024 SSTP61278 116 aa6.31□□□□□ -1.4
SYNE2-224ENST00000557024 SPANXN1Q5VSR9 72 aa6.31□□□□□ -1.4
SYNE2-224ENST00000557024 NFE4Q86UQ8 179 aa6.31□□□□□ -1.4
SYNE2-224ENST00000557024 DEFB104AQ8WTQ1 72 aa6.31□□□□□ -1.4
SYNE2-224ENST00000557024 PGLYRP4Q96LB8 373 aa6.31□□□□□ -1.4
SYNE2-224ENST00000557024 GFRA4Q9GZZ7 299 aa6.31□□□□□ -1.4
SYNE2-224ENST00000557024 NAT8BQ9UHF3 227 aa6.31□□□□□ -1.4
SYNE2-224ENST00000557024 IGLV5-52A0A0A0MRZ9 124 aa6.3□□□□□ -1.4
SYNE2-224ENST00000557024 FAM231BA6NCW3 169 aa6.3□□□□□ -1.4
SYNE2-224ENST00000557024 HIGD1CA8MV81 97 aa6.3□□□□□ -1.4
SYNE2-224ENST00000557024 M0R2P5 195 aa6.3□□□□□ -1.4
SYNE2-224ENST00000557024 RNASE3P12724 160 aaKnown RBP6.3□□□□□ -1.4
SYNE2-224ENST00000557024 CACNG7P62955 275 aa6.3□□□□□ -1.4
SYNE2-224ENST00000557024 DNLZQ5SXM8 178 aa6.3□□□□□ -1.4
SYNE2-224ENST00000557024 LYZL1Q6UWQ5 148 aa6.3□□□□□ -1.4
SYNE2-224ENST00000557024 ZFP82Q8N141 532 aa6.3□□□□□ -1.4
SYNE2-224ENST00000557024 LINC00612Q8N6U2 182 aa6.3□□□□□ -1.4
SYNE2-224ENST00000557024 VSIG2Q96IQ7 327 aa6.3□□□□□ -1.4
SYNE2-224ENST00000557024 FAM30AQ9NZY2 134 aa6.3□□□□□ -1.4
SYNE2-224ENST00000557024 TRGV1A0A0A0MS02 117 aa6.29□□□□□ -1.4
SYNE2-224ENST00000557024 SMIM27A0A1W2PRY6 76 aa6.29□□□□□ -1.4
SYNE2-224ENST00000557024 M0R381 172 aa6.29□□□□□ -1.4
SYNE2-224ENST00000557024 OR5AL1P0C617 328 aa6.29□□□□□ -1.4
SYNE2-224ENST00000557024 RIGQ13278 110 aa6.29□□□□□ -1.4
SYNE2-224ENST00000557024 SMIM15Q7Z3B0 74 aa6.29□□□□□ -1.4
SYNE2-224ENST00000557024 C9orf85Q96MD7 179 aa6.29□□□□□ -1.4
SYNE2-224ENST00000557024 IMMP2LQ96T52 175 aa6.29□□□□□ -1.4
SYNE2-224ENST00000557024 TMEM242Q9NWH2 141 aa6.29□□□□□ -1.4
SYNE2-224ENST00000557024 TRGV2A0A075B6R0 118 aa6.28□□□□□ -1.4
SYNE2-224ENST00000557024 MUC21A0A0G2JKD1 596 aa6.28□□□□□ -1.4
SYNE2-224ENST00000557024 MUC21A0A140T8X8 626 aa6.28□□□□□ -1.4
SYNE2-224ENST00000557024 A0A1B0GUT8 65 aa6.28□□□□□ -1.4
SYNE2-224ENST00000557024 SNAI2O43623 268 aa6.28□□□□□ -1.4
SYNE2-224ENST00000557024 SPINK4O60575 86 aa6.28□□□□□ -1.4
SYNE2-224ENST00000557024 IGLC6P0CF74 106 aa6.28□□□□□ -1.4
SYNE2-224ENST00000557024 DAZ2Q13117 558 aaKnown RBP6.28□□□□□ -1.4
SYNE2-224ENST00000557024 TWIST1Q15672 202 aa6.28□□□□□ -1.4
SYNE2-224ENST00000557024 ZNF876PQ49A33 203 aa6.28□□□□□ -1.4
SYNE2-224ENST00000557024 C11orf72Q8NBR9 251 aa6.28□□□□□ -1.4
SYNE2-224ENST00000557024 NUP35Q8NFH5 326 aa6.28□□□□□ -1.4
SYNE2-224ENST00000557024 BTF3L4Q96K17 158 aa6.28□□□□□ -1.4
SYNE2-224ENST00000557024 SMCO4Q9NRQ5 59 aa6.28□□□□□ -1.4
SYNE2-224ENST00000557024 MRPL16Q9NX20 251 aaKnown RBP6.28□□□□□ -1.4
SYNE2-224ENST00000557024 MSRB1Q9NZV6 116 aa6.28□□□□□ -1.4
SYNE2-224ENST00000557024 URGCP-MRPS24S4R325 110 aa6.28□□□□□ -1.4
SYNE2-224ENST00000557024 S100A8P05109 93 aa6.27□□□□□ -1.41
SYNE2-224ENST00000557024 TRGC1P0CF51 173 aa6.27□□□□□ -1.41
SYNE2-224ENST00000557024 SMIM17P0DL12 118 aa6.27□□□□□ -1.41
SYNE2-224ENST00000557024 NTF3P20783 257 aa6.27□□□□□ -1.41
SYNE2-224ENST00000557024 PTTG1IPP53801 180 aa6.27□□□□□ -1.41
SYNE2-224ENST00000557024 FOXA3P55318 350 aaPredicted RBP6.27□□□□□ -1.41
SYNE2-224ENST00000557024 MRPL54Q6P161 138 aaKnown RBP6.27□□□□□ -1.41
SYNE2-224ENST00000557024 WDR73Q6P4I2 378 aa6.27□□□□□ -1.41
SYNE2-224ENST00000557024 ATRAIDQ6UW56 229 aa6.27□□□□□ -1.41
SYNE2-224ENST00000557024 Q6ZTI0 123 aa6.27□□□□□ -1.41
SYNE2-224ENST00000557024 OR10AG1Q8NH19 301 aa6.27□□□□□ -1.41
SYNE2-224ENST00000557024 GTSF1Q8WW33 167 aa6.27□□□□□ -1.41
SYNE2-224ENST00000557024 TRAV9-1A0A075B6T8 112 aa6.26□□□□□ -1.41
SYNE2-224ENST00000557024 TRAV9-2A0A087WT02 112 aa6.26□□□□□ -1.41
SYNE2-224ENST00000557024 A8MWV9 139 aa6.26□□□□□ -1.41
SYNE2-224ENST00000557024 CTRLP40313 264 aa6.26□□□□□ -1.41
SYNE2-224ENST00000557024 RAB4BP61018 213 aa6.26□□□□□ -1.41
SYNE2-224ENST00000557024 OR4C5Q8NGB2 326 aa6.26□□□□□ -1.41
SYNE2-224ENST00000557024 PTH2Q96A98 100 aa6.26□□□□□ -1.41
SYNE2-224ENST00000557024 A0A1B0GW15 77 aa6.25□□□□□ -1.41
SYNE2-224ENST00000557024 MGPP08493 103 aa6.25□□□□□ -1.41
SYNE2-224ENST00000557024 CAMPP49913 170 aa6.25□□□□□ -1.41
SYNE2-224ENST00000557024 HBBP68871 147 aa6.25□□□□□ -1.41
SYNE2-224ENST00000557024 FAM74A4Q5TZK3 123 aa6.25□□□□□ -1.41
SYNE2-224ENST00000557024 ATP5L2Q7Z4Y8 100 aa6.25□□□□□ -1.41
SYNE2-224ENST00000557024 NTN5Q8WTR8 489 aaPredicted RBP6.25□□□□□ -1.41
SYNE2-224ENST00000557024 RASL10AQ92737 203 aa6.25□□□□□ -1.41
SYNE2-224ENST00000557024 AP1S3Q96PC3 154 aa6.25□□□□□ -1.41
SYNE2-224ENST00000557024 KRTAP4-7Q9BYR0 210 aa6.25□□□□□ -1.41
SYNE2-224ENST00000557024 ICOSQ9Y6W8 199 aa6.25□□□□□ -1.41
SYNE2-224ENST00000557024 A0A087WWL8 130 aa6.24□□□□□ -1.41
SYNE2-224ENST00000557024 TRAV4A0A0B4J268 109 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms