RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 RERGLQ9H628 205 aa0.34□□□□□ -2.36
SCFD1-217ENST00000555953 BET1LQ9NYM9 111 aa0.34□□□□□ -2.36
SCFD1-217ENST00000555953 PLXNA1Q9UIW2 1896 aa0.34□□□□□ -2.36
SCFD1-217ENST00000555953 APCP25054 2843 aa0.34□□□□□ -2.36
SCFD1-217ENST00000555953 AKAP11Q9UKA4 1901 aa0.34□□□□□ -2.36
SCFD1-217ENST00000555953 CFTRP13569 1480 aa0.34□□□□□ -2.36
SCFD1-217ENST00000555953 ABCA4P78363 2273 aa0.34□□□□□ -2.36
SCFD1-217ENST00000555953 MYH6P13533 1939 aa0.33□□□□□ -2.36
SCFD1-217ENST00000555953 MYH13Q9UKX3 1938 aa0.33□□□□□ -2.36
SCFD1-217ENST00000555953 NCOA3Q9Y6Q9 1424 aa0.33□□□□□ -2.36
SCFD1-217ENST00000555953 APOC1P02654 83 aa0.33□□□□□ -2.36
SCFD1-217ENST00000555953 APODP05090 189 aa0.33□□□□□ -2.36
SCFD1-217ENST00000555953 PIPP12273 146 aaPredicted RBP0.33□□□□□ -2.36
SCFD1-217ENST00000555953 SSBP1Q04837 148 aaKnown RBP0.33□□□□□ -2.36
SCFD1-217ENST00000555953 CATR1Q13166 79 aa0.33□□□□□ -2.36
SCFD1-217ENST00000555953 NDUFA11Q86Y39 141 aa0.33□□□□□ -2.36
SCFD1-217ENST00000555953 ZNF518AQ6AHZ1 1483 aa0.33□□□□□ -2.36
SCFD1-217ENST00000555953 QRICH2Q9H0J4 1663 aa0.33□□□□□ -2.36
SCFD1-217ENST00000555953 TNS1Q9HBL0 1735 aaKnown RBP0.33□□□□□ -2.36
SCFD1-217ENST00000555953 KDM6BO15054 1643 aa0.32□□□□□ -2.36
SCFD1-217ENST00000555953 BDP1A6H8Y1 2624 aa0.32□□□□□ -2.36
SCFD1-217ENST00000555953 TRBV7-1A0A0A6YYK4 115 aa0.32□□□□□ -2.36
SCFD1-217ENST00000555953 G3V318 75 aa0.32□□□□□ -2.36
SCFD1-217ENST00000555953 SNAPC5O75971 98 aa0.32□□□□□ -2.36
SCFD1-217ENST00000555953 AKAIN1P0CW23 69 aa0.32□□□□□ -2.36
SCFD1-217ENST00000555953 PP6455Q8WZ26 134 aa0.32□□□□□ -2.36
SCFD1-217ENST00000555953 V9GYV3 84 aa0.32□□□□□ -2.36
SCFD1-217ENST00000555953 JMJD1CQ15652 2540 aa0.32□□□□□ -2.36
SCFD1-217ENST00000555953 NRXN2Q9P2S2 1712 aa0.32□□□□□ -2.36
SCFD1-217ENST00000555953 LAMB1P07942 1786 aa0.32□□□□□ -2.36
SCFD1-217ENST00000555953 ROBO1Q9Y6N7 1651 aa0.31□□□□□ -2.36
SCFD1-217ENST00000555953 GOLGA3Q08378 1498 aa0.31□□□□□ -2.36
SCFD1-217ENST00000555953 IFT140Q96RY7 1462 aa0.31□□□□□ -2.36
SCFD1-217ENST00000555953 ARAP2Q8WZ64 1704 aa0.31□□□□□ -2.36
SCFD1-217ENST00000555953 TRAV13-2A0A0B4J235 113 aa0.31□□□□□ -2.36
SCFD1-217ENST00000555953 TRAV1-2A0A0B4J238 106 aa0.31□□□□□ -2.36
SCFD1-217ENST00000555953 TRBV10-3A0A0K0K1G6 114 aa0.31□□□□□ -2.36
SCFD1-217ENST00000555953 A6NIN4 97 aa0.31□□□□□ -2.36
SCFD1-217ENST00000555953 ACYP2P14621 99 aa0.31□□□□□ -2.36
SCFD1-217ENST00000555953 BTG2P78543 158 aa0.31□□□□□ -2.36
SCFD1-217ENST00000555953 CCL8P80075 99 aa0.31□□□□□ -2.36
SCFD1-217ENST00000555953 Q56UQ5 140 aa0.31□□□□□ -2.36
SCFD1-217ENST00000555953 PPP1R1CQ8WVI7 109 aa0.31□□□□□ -2.36
SCFD1-217ENST00000555953 C1orf54Q8WWF1 131 aa0.31□□□□□ -2.36
SCFD1-217ENST00000555953 WFDC6Q9BQY6 131 aa0.31□□□□□ -2.36
SCFD1-217ENST00000555953 COA4Q9NYJ1 87 aa0.31□□□□□ -2.36
SCFD1-217ENST00000555953 MED13LQ71F56 2210 aa0.31□□□□□ -2.36
SCFD1-217ENST00000555953 KMT2DO14686 5537 aa0.3□□□□□ -2.36
SCFD1-217ENST00000555953 KIAA0100Q14667 2235 aaKnown RBP0.3□□□□□ -2.36
SCFD1-217ENST00000555953 A2ML1A8K2U0 1454 aa0.3□□□□□ -2.36
SCFD1-217ENST00000555953 BCL9LQ86UU0 1499 aa0.3□□□□□ -2.36
SCFD1-217ENST00000555953 CACNA1HO95180 2353 aa0.3□□□□□ -2.36
SCFD1-217ENST00000555953 PHIPQ8WWQ0 1821 aa0.3□□□□□ -2.36
SCFD1-217ENST00000555953 SPEF2Q9C093 1822 aa0.3□□□□□ -2.36
SCFD1-217ENST00000555953 RBAKDNA6NC62 111 aa0.3□□□□□ -2.36
SCFD1-217ENST00000555953 F6UZH7 168 aa0.3□□□□□ -2.36
SCFD1-217ENST00000555953 SIX6O95475 246 aa0.3□□□□□ -2.36
SCFD1-217ENST00000555953 IFNGP01579 166 aa0.3□□□□□ -2.36
SCFD1-217ENST00000555953 FGF7P21781 194 aa0.3□□□□□ -2.36
SCFD1-217ENST00000555953 S100A1P23297 94 aa0.3□□□□□ -2.36
SCFD1-217ENST00000555953 C10orf128Q5T292 105 aa0.3□□□□□ -2.36
SCFD1-217ENST00000555953 C9orf153Q5TBE3 101 aa0.3□□□□□ -2.36
SCFD1-217ENST00000555953 Q6ZRX8 168 aa0.3□□□□□ -2.36
SCFD1-217ENST00000555953 NAA60Q9H7X0 242 aa0.3□□□□□ -2.36
SCFD1-217ENST00000555953 DAPK1P53355 1430 aa0.3□□□□□ -2.36
SCFD1-217ENST00000555953 TNCP24821 2201 aa0.29□□□□□ -2.36
SCFD1-217ENST00000555953 LAMC3Q9Y6N6 1575 aa0.29□□□□□ -2.36
SCFD1-217ENST00000555953 APOC4-APOC2K7ER74 178 aa0.29□□□□□ -2.36
SCFD1-217ENST00000555953 CORTO00230 105 aa0.29□□□□□ -2.36
SCFD1-217ENST00000555953 MRPL54Q6P161 138 aaKnown RBP0.29□□□□□ -2.36
SCFD1-217ENST00000555953 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.29□□□□□ -2.36
SCFD1-217ENST00000555953 ZNF818PQ6ZRF7 136 aa0.29□□□□□ -2.36
SCFD1-217ENST00000555953 GNG8Q9UK08 70 aa0.29□□□□□ -2.36
SCFD1-217ENST00000555953 ARFGEF1Q9Y6D6 1849 aa0.29□□□□□ -2.36
SCFD1-217ENST00000555953 CPSF1Q10570 1443 aaKnown RBP0.29□□□□□ -2.36
SCFD1-217ENST00000555953 MRC1P22897 1456 aa0.29□□□□□ -2.36
SCFD1-217ENST00000555953 TTC28Q96AY4 2481 aa0.28□□□□□ -2.36
SCFD1-217ENST00000555953 F5P12259 2224 aa0.28□□□□□ -2.36
SCFD1-217ENST00000555953 C10orf142B7Z368 130 aa0.28□□□□□ -2.36
SCFD1-217ENST00000555953 F2Z2F3 143 aa0.28□□□□□ -2.36
SCFD1-217ENST00000555953 PPP1R17O96001 155 aa0.28□□□□□ -2.36
SCFD1-217ENST00000555953 IFNA17P01571 189 aa0.28□□□□□ -2.36
SCFD1-217ENST00000555953 CCL18P55774 89 aa0.28□□□□□ -2.36
SCFD1-217ENST00000555953 FAM74A4Q5TZK3 123 aa0.28□□□□□ -2.36
SCFD1-217ENST00000555953 VMO1Q7Z5L0 202 aa0.28□□□□□ -2.36
SCFD1-217ENST00000555953 TTC9CQ8N5M4 171 aa0.28□□□□□ -2.36
SCFD1-217ENST00000555953 FAM213BQ8TBF2 198 aa0.28□□□□□ -2.36
SCFD1-217ENST00000555953 SMIM11BQ8TCY0 68 aa0.28□□□□□ -2.36
SCFD1-217ENST00000555953 PARP14Q460N5 1801 aa0.28□□□□□ -2.36
SCFD1-217ENST00000555953 MYOM2P54296 1465 aa0.28□□□□□ -2.37
SCFD1-217ENST00000555953 CDK13Q14004 1512 aaKnown RBP0.28□□□□□ -2.37
SCFD1-217ENST00000555953 UNC13BO14795 1591 aa0.28□□□□□ -2.37
SCFD1-217ENST00000555953 CUL7Q14999 1698 aa0.27□□□□□ -2.37
SCFD1-217ENST00000555953 NALCNQ8IZF0 1738 aa0.27□□□□□ -2.37
SCFD1-217ENST00000555953 TMEM14DPA8MWL7 114 aa0.27□□□□□ -2.37
SCFD1-217ENST00000555953 APOC2P02655 101 aa0.27□□□□□ -2.37
SCFD1-217ENST00000555953 NMBP08949 121 aa0.27□□□□□ -2.37
SCFD1-217ENST00000555953 SPANXDQ9BXN6 97 aa0.27□□□□□ -2.37
SCFD1-217ENST00000555953 BPESC1Q9GZL8 116 aa0.27□□□□□ -2.37
SCFD1-217ENST00000555953 DPH3P1Q9H4G8 78 aa0.27□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms