RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 RBMY1A1P0DJD3 496 aaKnown RBP1.11□□□□□ -2.23
NUP54-208ENST00000508604 COX7A1P24310 79 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 S100A4P26447 101 aaKnown RBP1.11□□□□□ -2.23
NUP54-208ENST00000508604 IFI27P40305 119 aaPredicted RBP1.11□□□□□ -2.23
NUP54-208ENST00000508604 ZNF80P51504 273 aaPredicted RBP1.11□□□□□ -2.23
NUP54-208ENST00000508604 DYNLT3P51808 116 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 NCBP2P52298 156 aaKnown RBP eCLIP1.11□□□□□ -2.23
NUP54-208ENST00000508604 RPL38P63173 70 aaKnown RBP1.11□□□□□ -2.23
NUP54-208ENST00000508604 PRR3P79522 188 aaKnown RBP1.11□□□□□ -2.23
NUP54-208ENST00000508604 SS18Q15532 418 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 ATXN8Q156A1 80 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 Q1T7F1 81 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 FBXL19-AS1Q494R0 122 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 ATP11AUNQ6ZP68 121 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 C7orf65Q6ZTY9 151 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 ARL17AQ8IVW1 177 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 CLECL1Q8IZS7 167 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 DAND5Q8N907 189 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 DYNLRB2Q8TF09 96 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 DIRC1Q969H9 104 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 FXYD5Q96DB9 178 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 ZNF714Q96N38 554 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 SPACA5Q96QH8 159 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 HIST1H4GQ99525 98 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 CYSTM1Q9H1C7 97 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 CCL28Q9NRJ3 127 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 SNRNP200O75643 2136 aaKnown RBP1.11□□□□□ -2.23
NUP54-208ENST00000508604 MUC6Q6W4X9 2439 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 PLXNB2O15031 1838 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 THADAQ6YHU6 1953 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 PCDH15Q96QU1 1955 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 KIAA2026Q5HYC2 2103 aa1.11□□□□□ -2.23
NUP54-208ENST00000508604 DYSFO75923 2080 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 TRBV10-3A0A0K0K1G6 114 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 TEX49A0A1B0GTD5 131 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 A0A1B0GW54 56 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 LINC01549A6NIU2 74 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 C19orf84I3L1E1 186 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 IGLV3-27P01718 113 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 TRBV12-3P01733 135 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 HMGN2P05204 90 aaKnown RBP1.1□□□□□ -2.23
NUP54-208ENST00000508604 PIRTP0C851 137 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 INAFM2P0DMQ5 153 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 MGST1P10620 155 aaKnown RBP1.1□□□□□ -2.23
NUP54-208ENST00000508604 CCL4P13236 92 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 NPPCP23582 126 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 XCL1P47992 114 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 UBE2AP49459 152 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 RBM3P98179 157 aaKnown RBP1.1□□□□□ -2.23
NUP54-208ENST00000508604 CIRBPQ14011 172 aaKnown RBP1.1□□□□□ -2.23
NUP54-208ENST00000508604 RBMY1FQ15415 496 aaKnown RBP1.1□□□□□ -2.23
NUP54-208ENST00000508604 RHOHQ15669 191 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 ESRGQ1W209 222 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 ASB16-AS1Q495Z4 193 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 LINC01554Q52M75 96 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 CLLU1OSQ5K130 101 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.1□□□□□ -2.23
NUP54-208ENST00000508604 ATP5EP2Q5VTU8 51 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 Q6JHZ5 121 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 GUSBP11Q6P575 273 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 C16orf47Q6ZP98 133 aaPredicted RBP1.1□□□□□ -2.23
NUP54-208ENST00000508604 RPS27LQ71UM5 84 aaKnown RBP1.1□□□□□ -2.23
NUP54-208ENST00000508604 FAM19A3Q7Z5A8 133 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 LINC00337Q8N6G1 96 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 C11orf72Q8NBR9 251 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 RNASE6Q93091 150 aaKnown RBP1.1□□□□□ -2.23
NUP54-208ENST00000508604 TIMM21Q9BVV7 248 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 XCL2Q9UBD3 114 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 TNRC6CQ9HCJ0 1690 aaKnown RBP1.1□□□□□ -2.23
NUP54-208ENST00000508604 NUP98P52948 1817 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 NUP214P35658 2090 aaPredicted RBP1.1□□□□□ -2.23
NUP54-208ENST00000508604 LCTP09848 1927 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 TNS1Q9HBL0 1735 aaKnown RBP1.1□□□□□ -2.23
NUP54-208ENST00000508604 TRAV7A0A075B6U4 112 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 TMSB15BA0A087X1C1 80 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 TRBV7-1A0A0A6YYK4 115 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 IGHV6-1A0A0B4J1U7 121 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 IGKV1D-43A0A0B4J1Z2 117 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 IGKV1D-13A0A0B4J2D9 117 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 IGKV1-9A0A0C4DH69 117 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 A0A0J9YXV3 536 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 TRBV30A0A0K0K1B3 111 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 LINC01546A6NGU7 62 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 IQCF6A8MYZ5 107 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 C12orf77C9JDV5 145 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 COX7A2P2O60397 106 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 ERC2-IT1O76042 136 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 LTAP01374 205 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 IGKV1-5P01602 117 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 PRM2P04554 102 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 COX6CP09669 75 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 CISD3P0C7P0 127 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 IGKV1-13P0DP09 117 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 PLNP26678 52 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 LINC00313P59037 77 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 BLCAPP62952 87 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 PLGLAQ15195 96 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 KISS1Q15726 138 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 KRTAP13-4Q3LI77 160 aa1.1□□□□□ -2.23
NUP54-208ENST00000508604 MRPL51Q4U2R6 128 aaKnown RBP1.1□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms