RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 WDR73Q6P4I2 378 aa3.86□□□□□ -1.79
CUX1-208ENST00000485792 TEX261Q6UWH6 196 aa3.86□□□□□ -1.79
CUX1-208ENST00000485792 FAM231DQ6ZW35 169 aa3.86□□□□□ -1.79
CUX1-208ENST00000485792 WFDC10BQ8IUB3 73 aa3.86□□□□□ -1.79
CUX1-208ENST00000485792 UBE2DNLQ8IWF7 75 aa3.86□□□□□ -1.79
CUX1-208ENST00000485792 C6orf223Q8N319 242 aa3.86□□□□□ -1.79
CUX1-208ENST00000485792 OR10AG1Q8NH19 301 aa3.86□□□□□ -1.79
CUX1-208ENST00000485792 OCC1Q8TAD7 63 aa3.86□□□□□ -1.79
CUX1-208ENST00000485792 FAM210AQ96ND0 272 aa3.86□□□□□ -1.79
CUX1-208ENST00000485792 A0A087WWL8 130 aa3.85□□□□□ -1.79
CUX1-208ENST00000485792 IFNA1P01562 189 aa3.85□□□□□ -1.79
CUX1-208ENST00000485792 S100A4P26447 101 aaKnown RBP3.85□□□□□ -1.79
CUX1-208ENST00000485792 SRIP30626 198 aa3.85□□□□□ -1.79
CUX1-208ENST00000485792 GNG4P50150 75 aa3.85□□□□□ -1.79
CUX1-208ENST00000485792 LINC01556Q5JQF7 62 aa3.85□□□□□ -1.79
CUX1-208ENST00000485792 ZFP82Q8N141 532 aa3.85□□□□□ -1.79
CUX1-208ENST00000485792 C14orf178Q8N769 122 aaPredicted RBP3.85□□□□□ -1.79
CUX1-208ENST00000485792 GTSF1LQ9H1H1 148 aa3.85□□□□□ -1.79
CUX1-208ENST00000485792 PHLDA3Q9Y5J5 127 aa3.85□□□□□ -1.79
CUX1-208ENST00000485792 PKHD1L1Q86WI1 4243 aa3.84□□□□□ -1.79
CUX1-208ENST00000485792 VPS13BQ7Z7G8 4022 aa3.84□□□□□ -1.79
CUX1-208ENST00000485792 IGHV3-73A0A0B4J1V6 119 aa3.84□□□□□ -1.79
CUX1-208ENST00000485792 MUC21A0A0G2JKD1 596 aa3.84□□□□□ -1.79
CUX1-208ENST00000485792 MUC21A0A140T8X8 626 aa3.84□□□□□ -1.79
CUX1-208ENST00000485792 F2Z2F3 143 aa3.84□□□□□ -1.79
CUX1-208ENST00000485792 SRP19P09132 144 aaKnown RBP3.84□□□□□ -1.79
CUX1-208ENST00000485792 GZMBP10144 247 aa3.84□□□□□ -1.79
CUX1-208ENST00000485792 CTRLP40313 264 aa3.84□□□□□ -1.79
CUX1-208ENST00000485792 RPS20P60866 119 aaKnown RBP3.84□□□□□ -1.79
CUX1-208ENST00000485792 RAB4BP61018 213 aa3.84□□□□□ -1.79
CUX1-208ENST00000485792 UBE2D3P61077 147 aa3.84□□□□□ -1.79
CUX1-208ENST00000485792 UBE2D2P62837 147 aa3.84□□□□□ -1.79
CUX1-208ENST00000485792 WFDC2Q14508 124 aa3.84□□□□□ -1.79
CUX1-208ENST00000485792 LELP1Q5T871 98 aa3.84□□□□□ -1.79
CUX1-208ENST00000485792 PRADC1Q9BSG0 188 aa3.84□□□□□ -1.79
CUX1-208ENST00000485792 SMDT1Q9H4I9 107 aa3.84□□□□□ -1.79
CUX1-208ENST00000485792 BIN3Q9NQY0 253 aa3.84□□□□□ -1.79
CUX1-208ENST00000485792 MED9Q9NWA0 146 aa3.84□□□□□ -1.79
CUX1-208ENST00000485792 MYCBP2O75592 4640 aa3.83□□□□□ -1.8
CUX1-208ENST00000485792 TRBV7-3A0A075B6L6 115 aa3.83□□□□□ -1.8
CUX1-208ENST00000485792 TMSB15BA0A087X1C1 80 aa3.83□□□□□ -1.8
CUX1-208ENST00000485792 IGHV3-38A0A0C4DH36 116 aa3.83□□□□□ -1.8
CUX1-208ENST00000485792 FAM231BA6NCW3 169 aa3.83□□□□□ -1.8
CUX1-208ENST00000485792 IBA57-AS1B1ANH7 110 aa3.83□□□□□ -1.8
CUX1-208ENST00000485792 M0QY20 66 aa3.83□□□□□ -1.8
CUX1-208ENST00000485792 LAGE3Q14657 143 aa3.83□□□□□ -1.8
CUX1-208ENST00000485792 SOHLH1Q5JUK2 328 aa3.83□□□□□ -1.8
CUX1-208ENST00000485792 LINC01551Q86U37 167 aa3.83□□□□□ -1.8
CUX1-208ENST00000485792 NEXN-AS1Q8NBZ9 246 aa3.83□□□□□ -1.8
CUX1-208ENST00000485792 ATP6V0E2Q8NHE4 81 aa3.83□□□□□ -1.8
CUX1-208ENST00000485792 GTSF1Q8WW33 167 aa3.83□□□□□ -1.8
CUX1-208ENST00000485792 MSRB1Q9NZV6 116 aa3.83□□□□□ -1.8
CUX1-208ENST00000485792 A0A087WWC5 75 aa3.82□□□□□ -1.8
CUX1-208ENST00000485792 LRCOL1A6NCL2 159 aa3.82□□□□□ -1.8
CUX1-208ENST00000485792 M0R381 172 aa3.82□□□□□ -1.8
CUX1-208ENST00000485792 GAS8-AS1O95177 125 aa3.82□□□□□ -1.8
CUX1-208ENST00000485792 P01737 135 aa3.82□□□□□ -1.8
CUX1-208ENST00000485792 CACNG7P62955 275 aa3.82□□□□□ -1.8
CUX1-208ENST00000485792 ATRAIDQ6UW56 229 aa3.82□□□□□ -1.8
CUX1-208ENST00000485792 LYZL1Q6UWQ5 148 aa3.82□□□□□ -1.8
CUX1-208ENST00000485792 C10orf126Q8N4M7 172 aa3.82□□□□□ -1.8
CUX1-208ENST00000485792 FER1L6-AS1Q8NA97 138 aa3.82□□□□□ -1.8
CUX1-208ENST00000485792 OR2D3Q8NGH3 330 aa3.82□□□□□ -1.8
CUX1-208ENST00000485792 GFRA4Q9GZZ7 299 aa3.82□□□□□ -1.8
CUX1-208ENST00000485792 RNASE7Q9H1E1 156 aaKnown RBP3.82□□□□□ -1.8
CUX1-208ENST00000485792 OSTCQ9NRP0 149 aa3.82□□□□□ -1.8
CUX1-208ENST00000485792 TRAV9-2A0A087WT02 112 aa3.81□□□□□ -1.8
CUX1-208ENST00000485792 TRIAP1O43715 76 aa3.81□□□□□ -1.8
CUX1-208ENST00000485792 SLPIP03973 132 aa3.81□□□□□ -1.8
CUX1-208ENST00000485792 NTF3P20783 257 aa3.81□□□□□ -1.8
CUX1-208ENST00000485792 EVI2AP22794 236 aa3.81□□□□□ -1.8
CUX1-208ENST00000485792 IFITM2Q01629 132 aa3.81□□□□□ -1.8
CUX1-208ENST00000485792 FAM74A3Q4VXF1 159 aa3.81□□□□□ -1.8
CUX1-208ENST00000485792 NTM-AS1Q6ZSK4 140 aa3.81□□□□□ -1.8
CUX1-208ENST00000485792 NFE4Q86UQ8 179 aa3.81□□□□□ -1.8
CUX1-208ENST00000485792 NIT1Q86X76 327 aa3.81□□□□□ -1.8
CUX1-208ENST00000485792 MAPKAPK5-AS1Q8N8E1 139 aa3.81□□□□□ -1.8
CUX1-208ENST00000485792 FRZBQ92765 325 aa3.81□□□□□ -1.8
CUX1-208ENST00000485792 DAZAP1Q96EP5 407 aaKnown RBP3.81□□□□□ -1.8
CUX1-208ENST00000485792 CHCHD7Q9BUK0 85 aa3.81□□□□□ -1.8
CUX1-208ENST00000485792 RPP21Q9H633 154 aaKnown RBP3.81□□□□□ -1.8
CUX1-208ENST00000485792 V9GYV3 84 aa3.81□□□□□ -1.8
CUX1-208ENST00000485792 FAT3Q8TDW7 4589 aa3.8□□□□□ -1.8
CUX1-208ENST00000485792 TRBV6-8A0A0A6YYG3 113 aa3.8□□□□□ -1.8
CUX1-208ENST00000485792 TRAV8-6A0A0B4J262 113 aa3.8□□□□□ -1.8
CUX1-208ENST00000485792 XKRY2A2RUG3 117 aa3.8□□□□□ -1.8
CUX1-208ENST00000485792 GAGE12JA6NER3 117 aa3.8□□□□□ -1.8
CUX1-208ENST00000485792 A8MWL6 223 aa3.8□□□□□ -1.8
CUX1-208ENST00000485792 F5H697 171 aa3.8□□□□□ -1.8
CUX1-208ENST00000485792 CDK2AP2O75956 126 aa3.8□□□□□ -1.8
CUX1-208ENST00000485792 RPL36AP83881 106 aaKnown RBP3.8□□□□□ -1.8
CUX1-208ENST00000485792 GAGE1Q13065 139 aa3.8□□□□□ -1.8
CUX1-208ENST00000485792 GAGE4Q13068 117 aa3.8□□□□□ -1.8
CUX1-208ENST00000485792 GAGE5Q13069 117 aa3.8□□□□□ -1.8
CUX1-208ENST00000485792 FAM74A4Q5TZK3 123 aa3.8□□□□□ -1.8
CUX1-208ENST00000485792 SPANXN1Q5VSR9 72 aa3.8□□□□□ -1.8
CUX1-208ENST00000485792 TSKUQ8WUA8 353 aa3.8□□□□□ -1.8
CUX1-208ENST00000485792 RPL36ALQ969Q0 106 aaKnown RBP3.8□□□□□ -1.8
CUX1-208ENST00000485792 ISOC2Q96AB3 205 aa3.8□□□□□ -1.8
CUX1-208ENST00000485792 PGLYRP4Q96LB8 373 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms