RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 SAA1P0DJI8 122 aaPredicted RBP3.6□□□□□ -1.83
USP40-213ENST00000483216 INAFM2P0DMQ5 153 aa3.6□□□□□ -1.83
USP40-213ENST00000483216 RPL27AP46776 148 aaKnown RBP3.6□□□□□ -1.83
USP40-213ENST00000483216 DLX1P56177 255 aa3.6□□□□□ -1.83
USP40-213ENST00000483216 LINC00173Q6ZV60 143 aa3.6□□□□□ -1.83
USP40-213ENST00000483216 UBE2WQ96B02 151 aa3.6□□□□□ -1.83
USP40-213ENST00000483216 CARD19Q96LW7 228 aa3.6□□□□□ -1.83
USP40-213ENST00000483216 SCGB3A1Q96QR1 104 aa3.6□□□□□ -1.83
USP40-213ENST00000483216 SHANK2-AS3Q9BTD1 123 aa3.6□□□□□ -1.83
USP40-213ENST00000483216 FGF23Q9GZV9 251 aaPredicted RBP3.6□□□□□ -1.83
USP40-213ENST00000483216 SDK2Q58EX2 2172 aa3.6□□□□□ -1.83
USP40-213ENST00000483216 PCNX2A6NKB5 2137 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 IGHV3-43A0A0B4J1X8 118 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 TRAV40A0A0B4J280 105 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 TRBV30A0A0K0K1B3 111 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 ZNF815PA8K554 130 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 RBP4P02753 201 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 MT-ATP8P03928 68 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 CGB3P0DN86 165 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 CGB7P0DN87 165 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 IGHV3-43DP0DP04 118 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 LGALS3P17931 250 aaKnown RBP3.59□□□□□ -1.83
USP40-213ENST00000483216 EMP1P54849 157 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 NSUN5P1Q3KNT7 163 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 RPL39P5Q59GN2 51 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 S100A7L2Q5SY68 101 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 PATE2Q6UY27 113 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 Q6ZR03 302 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 LINC00643Q86TS7 51 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 NDUFA11Q86Y39 141 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 VKORC1L1Q8N0U8 176 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 DEFB124Q8NES8 71 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 TOMM6Q96B49 74 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 PLEKHB2Q96CS7 222 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 LCE3DQ9BYE3 92 aa3.59□□□□□ -1.83
USP40-213ENST00000483216 DOCK10Q96BY6 2186 aa3.59□□□□□ -1.84
USP40-213ENST00000483216 CEP250Q9BV73 2442 aa3.59□□□□□ -1.84
USP40-213ENST00000483216 NCKAP5O14513 1909 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 CACNA1AO00555 2505 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 TRAV25A0A0B4J276 109 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 A0A0J9YX75 114 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 SPAARA0A1B0GVQ0 90 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 SDHAF1A6NFY7 115 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 FSTL3O95633 263 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 IGLC6P0CF74 106 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 PRTN3P24158 256 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 GLRXP35754 106 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 ZNF138P52744 262 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 TMEM258P61165 79 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 GNG5P63218 68 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 CIRBPQ14011 172 aaKnown RBP3.58□□□□□ -1.84
USP40-213ENST00000483216 C9orf153Q5TBE3 101 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 SPANXN1Q5VSR9 72 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 C6orf223Q8N319 242 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 C3orf22Q8N5N4 141 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 SLC25A29Q8N8R3 303 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 ZNRF2Q8NHG8 242 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 LINC00526Q96FQ7 95 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 ZC2HC1AQ96GY0 325 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 MRPL35Q9NZE8 188 aaKnown RBP3.58□□□□□ -1.84
USP40-213ENST00000483216 DOCK11Q5JSL3 2073 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 MYO7BQ6PIF6 2116 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 CNTRLQ7Z7A1 2325 aa3.58□□□□□ -1.84
USP40-213ENST00000483216 A0A096LNJ9 63 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 TRGV5A0A0B4J1U4 118 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 TRAV3A0A0B4J244 114 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 C11orf86A6NJI1 115 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 NDUFC2-KCTD14E9PQ53 114 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 H3BRN7 92 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 K7ERJ3 54 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 M0R3E3 92 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 LGALS9O00182 355 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 NBR2O15453 112 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 NDUFB3O43676 98 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 SH2D1AO60880 128 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 LHBP01229 141 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 TRACP01848 142 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 RBMY1CP0DJD4 496 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 LINC00315P59091 139 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 TNFAIP6P98066 277 aaPredicted RBP3.57□□□□□ -1.84
USP40-213ENST00000483216 NOTCH2Q04721 2471 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 DEFB121Q5J5C9 76 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 FAM201AQ5SY85 155 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 HES3Q5TGS1 186 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 TEX36Q5VZQ5 186 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 WDR86Q86TI4 376 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 RTTNQ86VV8 2226 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 FAM57AQ8TBR7 257 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 RNF185Q96GF1 192 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 C18orf15Q96N68 181 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 TIMM17AQ99595 171 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 NAA38Q9BRA0 125 aaKnown RBP3.57□□□□□ -1.84
USP40-213ENST00000483216 PRADC1Q9BSG0 188 aa3.57□□□□□ -1.84
USP40-213ENST00000483216 AHCTF1Q8WYP5 2266 aa3.56□□□□□ -1.84
USP40-213ENST00000483216 KIAA2026Q5HYC2 2103 aa3.56□□□□□ -1.84
USP40-213ENST00000483216 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.56□□□□□ -1.84
USP40-213ENST00000483216 IGKV1D-17A0A075B6S4 117 aa3.56□□□□□ -1.84
USP40-213ENST00000483216 IGKV1D-37A0A075B6S9 117 aa3.56□□□□□ -1.84
USP40-213ENST00000483216 TRAV8-1A0A0A6YYK1 113 aa3.56□□□□□ -1.84
USP40-213ENST00000483216 IGHV3-64DA0A0J9YX35 117 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms