RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.51□□□□□ -0.73
CCDC28B-205ENST00000483009 DAZ3Q9NR90 486 aaKnown RBP10.51□□□□□ -0.73
CCDC28B-205ENST00000483009 PGPEP1Q9NXJ5 209 aa10.51□□□□□ -0.73
CCDC28B-205ENST00000483009 URGCP-MRPS24S4R325 110 aa10.51□□□□□ -0.73
CCDC28B-205ENST00000483009 DNAH5Q8TE73 4624 aa10.51□□□□□ -0.73
CCDC28B-205ENST00000483009 CDPF1Q6NVV7 123 aa10.5□□□□□ -0.73
CCDC28B-205ENST00000483009 FAM231DQ6ZW35 169 aa10.5□□□□□ -0.73
CCDC28B-205ENST00000483009 SMIM7Q9BQ49 75 aa10.5□□□□□ -0.73
CCDC28B-205ENST00000483009 CHCHD7Q9BUK0 85 aa10.5□□□□□ -0.73
CCDC28B-205ENST00000483009 CNFNQ9BYD5 112 aa10.5□□□□□ -0.73
CCDC28B-205ENST00000483009 TRBV6-8A0A0A6YYG3 113 aa10.49□□□□□ -0.73
CCDC28B-205ENST00000483009 TRAV8-3A0A0A6YYJ7 113 aa10.49□□□□□ -0.73
CCDC28B-205ENST00000483009 H7C1H1 209 aa10.49□□□□□ -0.73
CCDC28B-205ENST00000483009 M0QY20 66 aa10.49□□□□□ -0.73
CCDC28B-205ENST00000483009 GATCO43716 136 aaKnown RBP10.49□□□□□ -0.73
CCDC28B-205ENST00000483009 CDK2AP2O75956 126 aa10.49□□□□□ -0.73
CCDC28B-205ENST00000483009 NTF3P20783 257 aa10.49□□□□□ -0.73
CCDC28B-205ENST00000483009 SUMO4Q6EEV6 95 aa10.49□□□□□ -0.73
CCDC28B-205ENST00000483009 TM2D2Q9BX73 214 aa10.49□□□□□ -0.73
CCDC28B-205ENST00000483009 DPH3P1Q9H4G8 78 aa10.49□□□□□ -0.73
CCDC28B-205ENST00000483009 A0A087WX48 190 aa10.48□□□□□ -0.73
CCDC28B-205ENST00000483009 SRP19P09132 144 aaKnown RBP10.48□□□□□ -0.73
CCDC28B-205ENST00000483009 TMEM97Q5BJF2 176 aa10.48□□□□□ -0.73
CCDC28B-205ENST00000483009 KCNIP4Q6PIL6 250 aa10.48□□□□□ -0.73
CCDC28B-205ENST00000483009 DNAJC30Q96LL9 226 aa10.48□□□□□ -0.73
CCDC28B-205ENST00000483009 LRCOL1A6NCL2 159 aa10.47□□□□□ -0.73
CCDC28B-205ENST00000483009 ZNF727A8MUV8 499 aa10.47□□□□□ -0.73
CCDC28B-205ENST00000483009 FUSP35637 526 aaKnown RBP eCLIP10.47□□□□□ -0.73
CCDC28B-205ENST00000483009 TWIST1Q15672 202 aa10.47□□□□□ -0.73
CCDC28B-205ENST00000483009 CT83Q5H943 113 aa10.47□□□□□ -0.73
CCDC28B-205ENST00000483009 LINC01551Q86U37 167 aa10.47□□□□□ -0.73
CCDC28B-205ENST00000483009 GTSF1Q8WW33 167 aa10.47□□□□□ -0.73
CCDC28B-205ENST00000483009 A8MWL6 223 aa10.46□□□□□ -0.73
CCDC28B-205ENST00000483009 ELOBQ15370 118 aa10.46□□□□□ -0.73
CCDC28B-205ENST00000483009 TEX261Q6UWH6 196 aa10.46□□□□□ -0.73
CCDC28B-205ENST00000483009 KLK12Q9UKR0 248 aa10.46□□□□□ -0.73
CCDC28B-205ENST00000483009 HSPG2P98160 4391 aa10.45□□□□□ -0.74
CCDC28B-205ENST00000483009 TMEM262E9PQX1 116 aa10.45□□□□□ -0.74
CCDC28B-205ENST00000483009 PKIAP61925 76 aa10.45□□□□□ -0.74
CCDC28B-205ENST00000483009 RASL11AQ6T310 242 aa10.45□□□□□ -0.74
CCDC28B-205ENST00000483009 RMI2Q96E14 147 aa10.45□□□□□ -0.74
CCDC28B-205ENST00000483009 APOBP04114 4563 aaKnown RBP10.45□□□□□ -0.74
CCDC28B-205ENST00000483009 NTM-AS1Q6ZSK4 140 aa10.44□□□□□ -0.74
CCDC28B-205ENST00000483009 UBE2WQ96B02 151 aa10.44□□□□□ -0.74
CCDC28B-205ENST00000483009 CHCHD5Q9BSY4 110 aa10.44□□□□□ -0.74
CCDC28B-205ENST00000483009 COX11Q9Y6N1 276 aa10.44□□□□□ -0.74
CCDC28B-205ENST00000483009 SMIM15Q7Z3B0 74 aa10.43□□□□□ -0.74
CCDC28B-205ENST00000483009 NTN5Q8WTR8 489 aaPredicted RBP10.43□□□□□ -0.74
CCDC28B-205ENST00000483009 PGLYRP4Q96LB8 373 aa10.43□□□□□ -0.74
CCDC28B-205ENST00000483009 NIT2Q9NQR4 276 aa10.43□□□□□ -0.74
CCDC28B-205ENST00000483009 OSTCQ9NRP0 149 aa10.43□□□□□ -0.74
CCDC28B-205ENST00000483009 TRBV25-1A0A075B6N4 114 aa10.42□□□□□ -0.74
CCDC28B-205ENST00000483009 FOXA3P55318 350 aaPredicted RBP10.42□□□□□ -0.74
CCDC28B-205ENST00000483009 IQCJQ1A5X6 159 aa10.42□□□□□ -0.74
CCDC28B-205ENST00000483009 FAM74A3Q4VXF1 159 aa10.42□□□□□ -0.74
CCDC28B-205ENST00000483009 MPV17L2Q567V2 206 aa10.42□□□□□ -0.74
CCDC28B-205ENST00000483009 Q8N814 137 aa10.42□□□□□ -0.74
CCDC28B-205ENST00000483009 TSKUQ8WUA8 353 aa10.42□□□□□ -0.74
CCDC28B-205ENST00000483009 IGKV2D-24A0A075B6R9 120 aa10.41□□□□□ -0.74
CCDC28B-205ENST00000483009 IGHV1-24A0A0C4DH33 117 aa10.41□□□□□ -0.74
CCDC28B-205ENST00000483009 C9JQL5 133 aa10.41□□□□□ -0.74
CCDC28B-205ENST00000483009 Q0VG73 95 aa10.41□□□□□ -0.74
CCDC28B-205ENST00000483009 WFDC2Q14508 124 aa10.41□□□□□ -0.74
CCDC28B-205ENST00000483009 PEA15Q15121 130 aa10.41□□□□□ -0.74
CCDC28B-205ENST00000483009 C15orf54Q8N8G6 183 aa10.41□□□□□ -0.74
CCDC28B-205ENST00000483009 FRZBQ92765 325 aa10.41□□□□□ -0.74
CCDC28B-205ENST00000483009 GFRA4Q9GZZ7 299 aa10.41□□□□□ -0.74
CCDC28B-205ENST00000483009 IGLV5-52A0A0A0MRZ9 124 aa10.4□□□□□ -0.74
CCDC28B-205ENST00000483009 FAM231BA6NCW3 169 aa10.4□□□□□ -0.74
CCDC28B-205ENST00000483009 CRPP02741 224 aa10.4□□□□□ -0.74
CCDC28B-205ENST00000483009 KRTAP10-1P60331 282 aa10.4□□□□□ -0.74
CCDC28B-205ENST00000483009 GAGE6Q13070 117 aa10.4□□□□□ -0.74
CCDC28B-205ENST00000483009 TMEM241Q24JQ0 296 aa10.4□□□□□ -0.74
CCDC28B-205ENST00000483009 ATRAIDQ6UW56 229 aa10.4□□□□□ -0.74
CCDC28B-205ENST00000483009 MAPKAPK5-AS1Q8N8E1 139 aa10.4□□□□□ -0.74
CCDC28B-205ENST00000483009 GATD1Q8NB37 220 aa10.4□□□□□ -0.74
CCDC28B-205ENST00000483009 BORCS7Q96B45 105 aa10.4□□□□□ -0.74
CCDC28B-205ENST00000483009 SMDT1Q9H4I9 107 aa10.4□□□□□ -0.74
CCDC28B-205ENST00000483009 TRAV26-2A0A0B4J265 109 aa10.39□□□□□ -0.75
CCDC28B-205ENST00000483009 HIGD1CA8MV81 97 aa10.39□□□□□ -0.75
CCDC28B-205ENST00000483009 ANGP03950 147 aaKnown RBP10.39□□□□□ -0.75
CCDC28B-205ENST00000483009 GCSHP23434 173 aa10.39□□□□□ -0.75
CCDC28B-205ENST00000483009 RPL23P62829 140 aaKnown RBP10.39□□□□□ -0.75
CCDC28B-205ENST00000483009 SRSF3P84103 164 aaKnown RBP10.39□□□□□ -0.75
CCDC28B-205ENST00000483009 Q8N976 141 aa10.39□□□□□ -0.75
CCDC28B-205ENST00000483009 ISOC2Q96AB3 205 aa10.39□□□□□ -0.75
CCDC28B-205ENST00000483009 NAT8Q9UHE5 227 aa10.39□□□□□ -0.75
CCDC28B-205ENST00000483009 V9GYV3 84 aa10.39□□□□□ -0.75
CCDC28B-205ENST00000483009 A0A1B0GUT8 65 aa10.38□□□□□ -0.75
CCDC28B-205ENST00000483009 RBX1P62877 108 aa10.38□□□□□ -0.75
CCDC28B-205ENST00000483009 ENHOQ6UWT2 76 aa10.38□□□□□ -0.75
CCDC28B-205ENST00000483009 BAALCQ8WXS3 180 aa10.38□□□□□ -0.75
CCDC28B-205ENST00000483009 TMEM243Q9BU79 118 aa10.38□□□□□ -0.75
CCDC28B-205ENST00000483009 LECT2O14960 151 aa10.37□□□□□ -0.75
CCDC28B-205ENST00000483009 COTL1Q14019 142 aa10.37□□□□□ -0.75
CCDC28B-205ENST00000483009 ADIRFQ15847 76 aa10.37□□□□□ -0.75
CCDC28B-205ENST00000483009 C1orf43Q9BWL3 253 aa10.37□□□□□ -0.75
CCDC28B-205ENST00000483009 RPL39LQ96EH5 51 aaKnown RBP10.36□□□□□ -0.75
CCDC28B-205ENST00000483009 AMTP48728 403 aa10.35□□□□□ -0.75
CCDC28B-205ENST00000483009 MIAQ16674 131 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms