RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 Q6ZS46 218 aa6.83□□□□□ -1.32
COL6A3-210ENST00000473258 CDKN2A-AS1Q9UH64 79 aa6.83□□□□□ -1.32
COL6A3-210ENST00000473258 NTM-AS1Q6ZSK4 140 aa6.83□□□□□ -1.32
COL6A3-210ENST00000473258 U3KQK5 164 aa6.83□□□□□ -1.32
COL6A3-210ENST00000473258 CASP8AP2Q9UKL3 1982 aa6.82□□□□□ -1.32
COL6A3-210ENST00000473258 IBA57-AS1B1ANH7 110 aa6.82□□□□□ -1.32
COL6A3-210ENST00000473258 CEMP1Q6PRD7 247 aaPredicted RBP6.82□□□□□ -1.32
COL6A3-210ENST00000473258 FAM19A1Q7Z5A9 133 aa6.82□□□□□ -1.32
COL6A3-210ENST00000473258 H3BS24 57 aa6.82□□□□□ -1.32
COL6A3-210ENST00000473258 PLA2G2AP14555 144 aa6.82□□□□□ -1.32
COL6A3-210ENST00000473258 LINC01560Q8TB33 94 aa6.82□□□□□ -1.32
COL6A3-210ENST00000473258 LTN1O94822 1766 aa6.82□□□□□ -1.32
COL6A3-210ENST00000473258 GVINP1Q7Z2Y8 2422 aa6.82□□□□□ -1.32
COL6A3-210ENST00000473258 TDRD15B5MCY1 1934 aaKnown RBP6.82□□□□□ -1.32
COL6A3-210ENST00000473258 C9orf106Q8NAJ2 232 aa6.82□□□□□ -1.32
COL6A3-210ENST00000473258 ZNF524Q96C55 264 aa6.82□□□□□ -1.32
COL6A3-210ENST00000473258 HCG22E2RYF7 251 aa6.82□□□□□ -1.32
COL6A3-210ENST00000473258 BCE1O60756 84 aa6.82□□□□□ -1.32
COL6A3-210ENST00000473258 C17orf58Q2M2W7 97 aa6.82□□□□□ -1.32
COL6A3-210ENST00000473258 ARAP2Q8WZ64 1704 aa6.81□□□□□ -1.32
COL6A3-210ENST00000473258 TET1Q8NFU7 2136 aa6.81□□□□□ -1.32
COL6A3-210ENST00000473258 Q6ZQY7 126 aa6.81□□□□□ -1.32
COL6A3-210ENST00000473258 HHLA3Q9XRX5 114 aa6.81□□□□□ -1.32
COL6A3-210ENST00000473258 IGLV10-54A0A075B6I4 117 aa6.81□□□□□ -1.32
COL6A3-210ENST00000473258 IGKV1-17P01599 117 aa6.81□□□□□ -1.32
COL6A3-210ENST00000473258 EIF4EBP1Q13541 118 aaPredicted RBP6.81□□□□□ -1.32
COL6A3-210ENST00000473258 NPBQ8NG41 125 aa6.81□□□□□ -1.32
COL6A3-210ENST00000473258 MED13LQ71F56 2210 aa6.81□□□□□ -1.32
COL6A3-210ENST00000473258 IGHV4-61A0A0C4DH41 118 aa6.81□□□□□ -1.32
COL6A3-210ENST00000473258 K7EQD1 137 aa6.81□□□□□ -1.32
COL6A3-210ENST00000473258 GGNQ86UU5 652 aa6.81□□□□□ -1.32
COL6A3-210ENST00000473258 UBE2D4Q9Y2X8 147 aa6.81□□□□□ -1.32
COL6A3-210ENST00000473258 SIGLEC1Q9BZZ2 1709 aa6.81□□□□□ -1.32
COL6A3-210ENST00000473258 NCKAP5O14513 1909 aa6.81□□□□□ -1.32
COL6A3-210ENST00000473258 PHIPQ8WWQ0 1821 aa6.8□□□□□ -1.32
COL6A3-210ENST00000473258 A0A096LPF7 62 aa6.8□□□□□ -1.32
COL6A3-210ENST00000473258 TRBV6-5A0A0K0K1A5 114 aa6.8□□□□□ -1.32
COL6A3-210ENST00000473258 DNAJC9-AS1A6NH13 148 aa6.8□□□□□ -1.32
COL6A3-210ENST00000473258 KMT2EQ8IZD2 1858 aa6.8□□□□□ -1.32
COL6A3-210ENST00000473258 KTN1-AS1Q86SY8 53 aa6.8□□□□□ -1.32
COL6A3-210ENST00000473258 FAM19A4Q96LR4 140 aa6.8□□□□□ -1.32
COL6A3-210ENST00000473258 IGLV3-12A0A075B6K2 115 aa6.8□□□□□ -1.32
COL6A3-210ENST00000473258 LINC01565O15544 149 aa6.8□□□□□ -1.32
COL6A3-210ENST00000473258 LCA10Q71F78 164 aa6.8□□□□□ -1.32
COL6A3-210ENST00000473258 LINC01561Q8N1V8 128 aa6.8□□□□□ -1.32
COL6A3-210ENST00000473258 B9D2Q9BPU9 175 aa6.8□□□□□ -1.32
COL6A3-210ENST00000473258 IGKV1OR2-108A0A075B7D4 117 aa6.8□□□□□ -1.32
COL6A3-210ENST00000473258 ZNF73O43830 326 aaPredicted RBP6.8□□□□□ -1.32
COL6A3-210ENST00000473258 UBR2Q8IWV8 1755 aa6.8□□□□□ -1.32
COL6A3-210ENST00000473258 H3BUX3 64 aa6.79□□□□□ -1.32
COL6A3-210ENST00000473258 CLPSP04118 112 aa6.79□□□□□ -1.32
COL6A3-210ENST00000473258 IGLV4-3A0A075B6K6 122 aa6.79□□□□□ -1.32
COL6A3-210ENST00000473258 A0A0J9YX75 114 aa6.79□□□□□ -1.32
COL6A3-210ENST00000473258 G3V318 75 aa6.79□□□□□ -1.32
COL6A3-210ENST00000473258 SMIM11BQ8TCY0 68 aa6.79□□□□□ -1.32
COL6A3-210ENST00000473258 hDV103S1A0JD37 113 aa6.79□□□□□ -1.32
COL6A3-210ENST00000473258 COL8A2P25067 703 aa6.79□□□□□ -1.32
COL6A3-210ENST00000473258 DOCK2Q92608 1830 aa6.79□□□□□ -1.32
COL6A3-210ENST00000473258 LAMB2P55268 1798 aa6.79□□□□□ -1.32
COL6A3-210ENST00000473258 PLXNB1O43157 2135 aa6.79□□□□□ -1.32
COL6A3-210ENST00000473258 PKD1L3Q7Z443 1732 aa6.79□□□□□ -1.32
COL6A3-210ENST00000473258 COL11A1P12107 1806 aaPredicted RBP6.79□□□□□ -1.32
COL6A3-210ENST00000473258 ZNF672Q499Z4 452 aaPredicted RBP6.79□□□□□ -1.32
COL6A3-210ENST00000473258 LINC00846Q9NV44 126 aa6.79□□□□□ -1.32
COL6A3-210ENST00000473258 IGKV2D-24A0A075B6R9 120 aa6.78□□□□□ -1.32
COL6A3-210ENST00000473258 IGLV3-1P01715 115 aa6.78□□□□□ -1.32
COL6A3-210ENST00000473258 HILS1P60008 231 aa6.78□□□□□ -1.32
COL6A3-210ENST00000473258 STRCQ7RTU9 1775 aa6.78□□□□□ -1.32
COL6A3-210ENST00000473258 RSPO1Q2MKA7 263 aaPredicted RBP6.78□□□□□ -1.32
COL6A3-210ENST00000473258 SPRR3Q9UBC9 169 aa6.78□□□□□ -1.32
COL6A3-210ENST00000473258 PRAC2D3DTV9 90 aa6.78□□□□□ -1.32
COL6A3-210ENST00000473258 HIGD2AQ9BW72 106 aa6.78□□□□□ -1.32
COL6A3-210ENST00000473258 C5orf67F2Z3F1 127 aa6.78□□□□□ -1.32
COL6A3-210ENST00000473258 LHBP01229 141 aa6.78□□□□□ -1.32
COL6A3-210ENST00000473258 ZNF80P51504 273 aaPredicted RBP6.77□□□□□ -1.33
COL6A3-210ENST00000473258 NOP10Q9NPE3 64 aaKnown RBP6.77□□□□□ -1.33
COL6A3-210ENST00000473258 LYPD2Q6UXB3 125 aa6.77□□□□□ -1.33
COL6A3-210ENST00000473258 FOCADQ5VW36 1801 aa6.77□□□□□ -1.33
COL6A3-210ENST00000473258 TUBGCP6Q96RT7 1819 aa6.77□□□□□ -1.33
COL6A3-210ENST00000473258 MALRD1Q5VYJ5 2156 aa6.77□□□□□ -1.33
COL6A3-210ENST00000473258 I3L2K1 104 aa6.76□□□□□ -1.33
COL6A3-210ENST00000473258 SPINT4Q6UDR6 99 aa6.76□□□□□ -1.33
COL6A3-210ENST00000473258 PAPPA2Q9BXP8 1791 aa6.76□□□□□ -1.33
COL6A3-210ENST00000473258 KIAA1549Q9HCM3 1950 aa6.76□□□□□ -1.33
COL6A3-210ENST00000473258 FLVCR1-AS1Q8TAF5 88 aa6.76□□□□□ -1.33
COL6A3-210ENST00000473258 ACACAQ13085 2346 aa6.76□□□□□ -1.33
COL6A3-210ENST00000473258 ODF3L1Q8IXM7 274 aa6.76□□□□□ -1.33
COL6A3-210ENST00000473258 RPL28P46779 137 aaKnown RBP6.75□□□□□ -1.33
COL6A3-210ENST00000473258 K7EIM0 57 aa6.75□□□□□ -1.33
COL6A3-210ENST00000473258 OTOGLQ3ZCN5 2332 aa6.75□□□□□ -1.33
COL6A3-210ENST00000473258 C7orf65Q6ZTY9 151 aa6.75□□□□□ -1.33
COL6A3-210ENST00000473258 SBSPONQ8IVN8 264 aa6.75□□□□□ -1.33
COL6A3-210ENST00000473258 NYNRINQ9P2P1 1898 aaKnown RBP6.75□□□□□ -1.33
COL6A3-210ENST00000473258 IGHV4-30-4P0DP06 118 aa6.75□□□□□ -1.33
COL6A3-210ENST00000473258 IGHV4-31P0DP07 118 aa6.75□□□□□ -1.33
COL6A3-210ENST00000473258 KAAG1Q9UBP8 84 aa6.75□□□□□ -1.33
COL6A3-210ENST00000473258 RNF185Q96GF1 192 aa6.75□□□□□ -1.33
COL6A3-210ENST00000473258 MYO16Q9Y6X6 1858 aa6.75□□□□□ -1.33
COL6A3-210ENST00000473258 CGB7P0DN87 165 aa6.75□□□□□ -1.33
COL6A3-210ENST00000473258 Q6ZVQ6 151 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms