RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 CELA1Q9UNI1 258 aa6.57□□□□□ -1.36
UPF2-202ENST00000357604 RNASE3P12724 160 aaKnown RBP6.57□□□□□ -1.36
UPF2-202ENST00000357604 LGALS3P17931 250 aaKnown RBP6.57□□□□□ -1.36
UPF2-202ENST00000357604 CKS1BP61024 79 aa6.57□□□□□ -1.36
UPF2-202ENST00000357604 KIR3DS1Q14943 382 aa6.57□□□□□ -1.36
UPF2-202ENST00000357604 Q9HAA7 133 aa6.57□□□□□ -1.36
UPF2-202ENST00000357604 LEPROTL1O95214 131 aa6.57□□□□□ -1.36
UPF2-202ENST00000357604 CSNK1G2-AS1Q8NCQ2 148 aa6.57□□□□□ -1.36
UPF2-202ENST00000357604 CFAP54Q96N23 3096 aa6.56□□□□□ -1.36
UPF2-202ENST00000357604 IGLV2-8P01709 118 aa6.56□□□□□ -1.36
UPF2-202ENST00000357604 NEXN-AS1Q8NBZ9 246 aa6.56□□□□□ -1.36
UPF2-202ENST00000357604 CBY1Q9Y3M2 126 aa6.56□□□□□ -1.36
UPF2-202ENST00000357604 LINC00322Q6ZN03 302 aaPredicted RBP6.56□□□□□ -1.36
UPF2-202ENST00000357604 LINC00614P0C842 121 aa6.56□□□□□ -1.36
UPF2-202ENST00000357604 CBLN2Q8IUK8 224 aa6.56□□□□□ -1.36
UPF2-202ENST00000357604 SCRT2Q9NQ03 307 aa6.56□□□□□ -1.36
UPF2-202ENST00000357604 KIAA1644Q3SXP7 199 aa6.55□□□□□ -1.36
UPF2-202ENST00000357604 C11orf72Q8NBR9 251 aa6.55□□□□□ -1.36
UPF2-202ENST00000357604 MYO15AQ9UKN7 3530 aa6.55□□□□□ -1.36
UPF2-202ENST00000357604 DSPP15924 2871 aaKnown RBP6.55□□□□□ -1.36
UPF2-202ENST00000357604 TIRAPP58753 221 aa6.55□□□□□ -1.36
UPF2-202ENST00000357604 KRTDAPP60985 99 aa6.55□□□□□ -1.36
UPF2-202ENST00000357604 HERVK_113P63121 156 aa6.55□□□□□ -1.36
UPF2-202ENST00000357604 C10orf91Q5T1B1 145 aa6.55□□□□□ -1.36
UPF2-202ENST00000357604 ITPR1Q14643 2758 aa6.55□□□□□ -1.36
UPF2-202ENST00000357604 WDFY4Q6ZS81 3184 aa6.55□□□□□ -1.36
UPF2-202ENST00000357604 SMKR1H3BMG3 65 aa6.55□□□□□ -1.36
UPF2-202ENST00000357604 CHTOPQ9Y3Y2 248 aaKnown RBP6.55□□□□□ -1.36
UPF2-202ENST00000357604 CHD6Q8TD26 2715 aa6.55□□□□□ -1.36
UPF2-202ENST00000357604 MGAQ8IWI9 3026 aa6.54□□□□□ -1.36
UPF2-202ENST00000357604 TRBV6-8A0A0A6YYG3 113 aa6.54□□□□□ -1.36
UPF2-202ENST00000357604 CRIP1P50238 77 aa6.54□□□□□ -1.36
UPF2-202ENST00000357604 SFTA2Q6UW10 78 aa6.54□□□□□ -1.36
UPF2-202ENST00000357604 Q9H8V8 135 aa6.54□□□□□ -1.36
UPF2-202ENST00000357604 MSRB1Q9NZV6 116 aa6.54□□□□□ -1.36
UPF2-202ENST00000357604 TRAV8-4A0A0B4J246 113 aa6.54□□□□□ -1.36
UPF2-202ENST00000357604 MIAQ16674 131 aa6.54□□□□□ -1.36
UPF2-202ENST00000357604 MIEN1Q9BRT3 115 aa6.54□□□□□ -1.36
UPF2-202ENST00000357604 GTSF1Q8WW33 167 aa6.54□□□□□ -1.36
UPF2-202ENST00000357604 ZNF664Q8N3J9 261 aa6.53□□□□□ -1.36
UPF2-202ENST00000357604 LINC00469Q8N7U9 141 aa6.53□□□□□ -1.36
UPF2-202ENST00000357604 FABP4P15090 132 aa6.53□□□□□ -1.36
UPF2-202ENST00000357604 Q8N976 141 aa6.53□□□□□ -1.36
UPF2-202ENST00000357604 VCANP13611 3396 aa6.53□□□□□ -1.36
UPF2-202ENST00000357604 CSPG4Q6UVK1 2322 aa6.53□□□□□ -1.36
UPF2-202ENST00000357604 LGALS9CQ6DKI2 356 aa6.53□□□□□ -1.36
UPF2-202ENST00000357604 TRAV13-1A0A0B4J241 112 aa6.53□□□□□ -1.36
UPF2-202ENST00000357604 TRGC2P03986 189 aa6.53□□□□□ -1.36
UPF2-202ENST00000357604 HOXA5P20719 270 aa6.53□□□□□ -1.36
UPF2-202ENST00000357604 UBE2D3P61077 147 aa6.53□□□□□ -1.36
UPF2-202ENST00000357604 UBE2D2P62837 147 aa6.53□□□□□ -1.36
UPF2-202ENST00000357604 MEIG1Q5JSS6 88 aa6.53□□□□□ -1.36
UPF2-202ENST00000357604 NIT1Q86X76 327 aa6.53□□□□□ -1.36
UPF2-202ENST00000357604 RPL32P62910 135 aaKnown RBP6.52□□□□□ -1.37
UPF2-202ENST00000357604 C11orf21Q9P2W6 132 aa6.52□□□□□ -1.37
UPF2-202ENST00000357604 MYO9AB2RTY4 2548 aa6.52□□□□□ -1.37
UPF2-202ENST00000357604 C2orf66Q6UXQ4 117 aa6.52□□□□□ -1.37
UPF2-202ENST00000357604 ABCA2Q9BZC7 2435 aa6.52□□□□□ -1.37
UPF2-202ENST00000357604 TRBV6-5A0A0K0K1A5 114 aa6.52□□□□□ -1.37
UPF2-202ENST00000357604 TMEM170BQ5T4T1 132 aa6.52□□□□□ -1.37
UPF2-202ENST00000357604 TOMM7Q9P0U1 55 aa6.52□□□□□ -1.37
UPF2-202ENST00000357604 UNC79Q9P2D8 2635 aa6.52□□□□□ -1.37
UPF2-202ENST00000357604 M0QY20 66 aa6.52□□□□□ -1.37
UPF2-202ENST00000357604 NPSP0C0P6 89 aa6.52□□□□□ -1.37
UPF2-202ENST00000357604 KLK12Q9UKR0 248 aa6.52□□□□□ -1.37
UPF2-202ENST00000357604 LAMA1P25391 3075 aa6.52□□□□□ -1.37
UPF2-202ENST00000357604 IGLV2-18A0A075B6J9 118 aa6.51□□□□□ -1.37
UPF2-202ENST00000357604 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.51□□□□□ -1.37
UPF2-202ENST00000357604 IGKV2-29A2NJV5 120 aaPredicted RBP6.51□□□□□ -1.37
UPF2-202ENST00000357604 M0R2N4 97 aa6.51□□□□□ -1.37
UPF2-202ENST00000357604 LYPD5Q6UWN5 251 aa6.51□□□□□ -1.37
UPF2-202ENST00000357604 GATD1Q8NB37 220 aa6.51□□□□□ -1.37
UPF2-202ENST00000357604 COX7A2LO14548 114 aa6.51□□□□□ -1.37
UPF2-202ENST00000357604 RPL39LQ96EH5 51 aaKnown RBP6.51□□□□□ -1.37
UPF2-202ENST00000357604 C9JQL5 133 aa6.51□□□□□ -1.37
UPF2-202ENST00000357604 NPYP01303 97 aa6.51□□□□□ -1.37
UPF2-202ENST00000357604 CNFNQ9BYD5 112 aa6.51□□□□□ -1.37
UPF2-202ENST00000357604 FGF6P10767 208 aa6.51□□□□□ -1.37
UPF2-202ENST00000357604 REG3AQ06141 175 aa6.51□□□□□ -1.37
UPF2-202ENST00000357604 PMVKQ15126 192 aa6.51□□□□□ -1.37
UPF2-202ENST00000357604 JPT2Q9H910 190 aa6.51□□□□□ -1.37
UPF2-202ENST00000357604 PLEKHB2Q96CS7 222 aa6.5□□□□□ -1.37
UPF2-202ENST00000357604 C6orf226Q5I0X4 101 aa6.5□□□□□ -1.37
UPF2-202ENST00000357604 ABCA12Q86UK0 2595 aa6.5□□□□□ -1.37
UPF2-202ENST00000357604 PLNP26678 52 aa6.49□□□□□ -1.37
UPF2-202ENST00000357604 SNRPEP62304 92 aaKnown RBP6.49□□□□□ -1.37
UPF2-202ENST00000357604 ATRAIDQ6UW56 229 aa6.49□□□□□ -1.37
UPF2-202ENST00000357604 EDA2RQ9HAV5 297 aa6.49□□□□□ -1.37
UPF2-202ENST00000357604 CXCL5P42830 114 aa6.49□□□□□ -1.37
UPF2-202ENST00000357604 LINC00336Q6ZUF6 198 aa6.49□□□□□ -1.37
UPF2-202ENST00000357604 CASC10Q5T4H9 136 aa6.49□□□□□ -1.37
UPF2-202ENST00000357604 C6orf223Q8N319 242 aa6.49□□□□□ -1.37
UPF2-202ENST00000357604 GCN1Q92616 2671 aaKnown RBP6.49□□□□□ -1.37
UPF2-202ENST00000357604 DPM2O94777 84 aa6.48□□□□□ -1.37
UPF2-202ENST00000357604 CLPSL2Q6UWE3 100 aa6.48□□□□□ -1.37
UPF2-202ENST00000357604 ERASQ7Z444 233 aa6.48□□□□□ -1.37
UPF2-202ENST00000357604 FRYQ5TBA9 3013 aa6.48□□□□□ -1.37
UPF2-202ENST00000357604 ADCYAP1P18509 176 aa6.48□□□□□ -1.37
UPF2-202ENST00000357604 LINC00612Q8N6U2 182 aa6.48□□□□□ -1.37
UPF2-202ENST00000357604 DMDP11532 3685 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 146.5 ms