RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 FGF6P10767 208 aa11.24□□□□□ -0.61
COL17A1-201ENST00000353479 LINC00322Q6ZN03 302 aaPredicted RBP11.24□□□□□ -0.61
COL17A1-201ENST00000353479 SNHG12Q9BXW3 62 aa11.24□□□□□ -0.61
COL17A1-201ENST00000353479 SHISA2Q6UWI4 295 aa11.24□□□□□ -0.61
COL17A1-201ENST00000353479 C18orf65Q6ZTR6 163 aa11.23□□□□□ -0.61
COL17A1-201ENST00000353479 VSIG2Q96IQ7 327 aa11.23□□□□□ -0.61
COL17A1-201ENST00000353479 HILS1P60008 231 aa11.23□□□□□ -0.61
COL17A1-201ENST00000353479 IGLL5B9A064 214 aa11.22□□□□□ -0.61
COL17A1-201ENST00000353479 Q6ZTI0 123 aa11.22□□□□□ -0.61
COL17A1-201ENST00000353479 CEND1Q8N111 149 aa11.22□□□□□ -0.61
COL17A1-201ENST00000353479 LINC00482Q8N8I6 264 aa11.22□□□□□ -0.61
COL17A1-201ENST00000353479 COX7A2LO14548 114 aa11.22□□□□□ -0.61
COL17A1-201ENST00000353479 CAMK2N2Q96S95 79 aa11.22□□□□□ -0.61
COL17A1-201ENST00000353479 TRAV4A0A0B4J268 109 aa11.22□□□□□ -0.61
COL17A1-201ENST00000353479 CDK2AP2O75956 126 aa11.22□□□□□ -0.61
COL17A1-201ENST00000353479 PRO0255Q9UI72 69 aa11.22□□□□□ -0.61
COL17A1-201ENST00000353479 SPTBN4Q9H254 2564 aa11.22□□□□□ -0.61
COL17A1-201ENST00000353479 PCP2Q8IVA1 136 aa11.22□□□□□ -0.61
COL17A1-201ENST00000353479 DLEU1O43261 78 aa11.22□□□□□ -0.61
COL17A1-201ENST00000353479 IGLV2-8P01709 118 aa11.21□□□□□ -0.61
COL17A1-201ENST00000353479 TANC2Q9HCD6 1990 aa11.21□□□□□ -0.61
COL17A1-201ENST00000353479 BOD1L2Q8IYS8 172 aa11.21□□□□□ -0.61
COL17A1-201ENST00000353479 PRO1854Q9UHT4 67 aa11.21□□□□□ -0.61
COL17A1-201ENST00000353479 COX11Q9Y6N1 276 aa11.21□□□□□ -0.61
COL17A1-201ENST00000353479 RPL18AQ02543 176 aaKnown RBP11.21□□□□□ -0.62
COL17A1-201ENST00000353479 ODF3Q96PU9 254 aa11.21□□□□□ -0.62
COL17A1-201ENST00000353479 UBE2BP63146 152 aa11.2□□□□□ -0.62
COL17A1-201ENST00000353479 C11orf45Q8TAV5 145 aa11.2□□□□□ -0.62
COL17A1-201ENST00000353479 TMEM126AQ9H061 195 aa11.2□□□□□ -0.62
COL17A1-201ENST00000353479 TRAV13-2A0A0B4J235 113 aa11.2□□□□□ -0.62
COL17A1-201ENST00000353479 EML5Q05BV3 1969 aa11.2□□□□□ -0.62
COL17A1-201ENST00000353479 BVES-AS1Q5T3Y7 98 aa11.2□□□□□ -0.62
COL17A1-201ENST00000353479 GAGE2AQ6NT46 116 aa11.2□□□□□ -0.62
COL17A1-201ENST00000353479 K7ERJ3 54 aa11.2□□□□□ -0.62
COL17A1-201ENST00000353479 UBE2V1Q13404 147 aa11.2□□□□□ -0.62
COL17A1-201ENST00000353479 COA6Q5JTJ3 125 aaKnown RBP11.2□□□□□ -0.62
COL17A1-201ENST00000353479 KLK5Q9Y337 293 aaPredicted RBP11.2□□□□□ -0.62
COL17A1-201ENST00000353479 GDF5OSQ5U4N7 250 aa11.19□□□□□ -0.62
COL17A1-201ENST00000353479 P0DMU3 169 aa11.19□□□□□ -0.62
COL17A1-201ENST00000353479 FAM231AP0DMU4 169 aa11.19□□□□□ -0.62
COL17A1-201ENST00000353479 FAM231CP0DMU5 169 aa11.19□□□□□ -0.62
COL17A1-201ENST00000353479 KLK12Q9UKR0 248 aa11.19□□□□□ -0.62
COL17A1-201ENST00000353479 FAM222AQ5U5X8 452 aa11.19□□□□□ -0.62
COL17A1-201ENST00000353479 TAL2Q16559 108 aa11.19□□□□□ -0.62
COL17A1-201ENST00000353479 HIST1H4AP62805 103 aaKnown RBP11.18□□□□□ -0.62
COL17A1-201ENST00000353479 TOMM6Q96B49 74 aa11.18□□□□□ -0.62
COL17A1-201ENST00000353479 HERV-K104P63124 156 aa11.18□□□□□ -0.62
COL17A1-201ENST00000353479 GAGE2EQ4V326 116 aa11.18□□□□□ -0.62
COL17A1-201ENST00000353479 BBC3Q96PG8 261 aaPredicted RBP11.18□□□□□ -0.62
COL17A1-201ENST00000353479 GAGE2DQ9UEU5 116 aa11.18□□□□□ -0.62
COL17A1-201ENST00000353479 MTURNQ8N3F0 131 aa11.18□□□□□ -0.62
COL17A1-201ENST00000353479 BAALCQ8WXS3 180 aa11.18□□□□□ -0.62
COL17A1-201ENST00000353479 CHD8Q9HCK8 2581 aa11.18□□□□□ -0.62
COL17A1-201ENST00000353479 C9orf118A6NHY6 69 aa11.18□□□□□ -0.62
COL17A1-201ENST00000353479 TRAV26-1A0A087WT03 109 aa11.17□□□□□ -0.62
COL17A1-201ENST00000353479 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.17□□□□□ -0.62
COL17A1-201ENST00000353479 MBD6Q96DN6 1003 aa11.17□□□□□ -0.62
COL17A1-201ENST00000353479 FAM110AQ9BQ89 295 aa11.17□□□□□ -0.62
COL17A1-201ENST00000353479 IGLV1-40P01703 118 aa11.17□□□□□ -0.62
COL17A1-201ENST00000353479 SIVA1O15304 175 aa11.17□□□□□ -0.62
COL17A1-201ENST00000353479 MLST8Q9BVC4 326 aa11.17□□□□□ -0.62
COL17A1-201ENST00000353479 COX7B2Q8TF08 81 aa11.16□□□□□ -0.62
COL17A1-201ENST00000353479 HCFC1P51610 2035 aa11.16□□□□□ -0.62
COL17A1-201ENST00000353479 TRBV20-1A0A075B6N2 111 aa11.16□□□□□ -0.62
COL17A1-201ENST00000353479 LINC01545Q5VT33 79 aa11.16□□□□□ -0.62
COL17A1-201ENST00000353479 TRBV10-1A0A0K0K1A3 114 aa11.16□□□□□ -0.62
COL17A1-201ENST00000353479 CDPF1Q6NVV7 123 aa11.16□□□□□ -0.62
COL17A1-201ENST00000353479 CPAMD8Q8IZJ3 1885 aa11.16□□□□□ -0.62
COL17A1-201ENST00000353479 OCIAD2Q56VL3 154 aa11.15□□□□□ -0.62
COL17A1-201ENST00000353479 TIMM17AQ99595 171 aa11.15□□□□□ -0.62
COL17A1-201ENST00000353479 OPRPNQ99935 248 aaPredicted RBP11.15□□□□□ -0.62
COL17A1-201ENST00000353479 COL4A2P08572 1712 aa11.15□□□□□ -0.62
COL17A1-201ENST00000353479 ANKRD39Q53RE8 183 aa11.15□□□□□ -0.62
COL17A1-201ENST00000353479 SIGMAR1Q99720 223 aa11.15□□□□□ -0.62
COL17A1-201ENST00000353479 IGLC6P0CF74 106 aa11.15□□□□□ -0.63
COL17A1-201ENST00000353479 CEMP1Q6PRD7 247 aaPredicted RBP11.15□□□□□ -0.63
COL17A1-201ENST00000353479 C20orf203Q8NBC4 194 aa11.14□□□□□ -0.63
COL17A1-201ENST00000353479 MYO9AB2RTY4 2548 aa11.14□□□□□ -0.63
COL17A1-201ENST00000353479 ATG2AQ2TAZ0 1938 aa11.14□□□□□ -0.63
COL17A1-201ENST00000353479 SMIM9A6NGZ8 99 aa11.14□□□□□ -0.63
COL17A1-201ENST00000353479 PRSS47A8MTI9 375 aa11.14□□□□□ -0.63
COL17A1-201ENST00000353479 A0A1B0GXF2 115 aa11.14□□□□□ -0.63
COL17A1-201ENST00000353479 ZFAND2AQ8N6M9 145 aa11.14□□□□□ -0.63
COL17A1-201ENST00000353479 C12orf74Q32Q52 190 aa11.13□□□□□ -0.63
COL17A1-201ENST00000353479 TRAV12-1A0A0B4J245 112 aa11.13□□□□□ -0.63
COL17A1-201ENST00000353479 WFDC10AQ9H1F0 79 aa11.13□□□□□ -0.63
COL17A1-201ENST00000353479 DNAH12Q6ZR08 3092 aa11.13□□□□□ -0.63
COL17A1-201ENST00000353479 SOCS3O14543 225 aa11.13□□□□□ -0.63
COL17A1-201ENST00000353479 CITED1Q99966 193 aa11.13□□□□□ -0.63
COL17A1-201ENST00000353479 LYRM9A8MSI8 78 aa11.13□□□□□ -0.63
COL17A1-201ENST00000353479 SORL1Q92673 2214 aa11.13□□□□□ -0.63
COL17A1-201ENST00000353479 CCL25O15444 150 aa11.12□□□□□ -0.63
COL17A1-201ENST00000353479 CRIP1P50238 77 aa11.12□□□□□ -0.63
COL17A1-201ENST00000353479 RAI1Q7Z5J4 1906 aaPredicted RBP11.12□□□□□ -0.63
COL17A1-201ENST00000353479 NDUFA1O15239 70 aa11.11□□□□□ -0.63
COL17A1-201ENST00000353479 DAND5Q8N907 189 aa11.11□□□□□ -0.63
COL17A1-201ENST00000353479 SPATA25Q9BR10 227 aa11.11□□□□□ -0.63
COL17A1-201ENST00000353479 TM2D2Q9BX73 214 aa11.11□□□□□ -0.63
COL17A1-201ENST00000353479 C11orf86A6NJI1 115 aa11.11□□□□□ -0.63
COL17A1-201ENST00000353479 TTTY13Q9BZ97 58 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms