RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 ACACBO00763 2458 aa6.79□□□□□ -1.32
USF3-201ENST00000316407 NFE4Q86UQ8 179 aa6.79□□□□□ -1.32
USF3-201ENST00000316407 ZNF524Q96C55 264 aa6.79□□□□□ -1.32
USF3-201ENST00000316407 E9PLD3 99 aa6.79□□□□□ -1.32
USF3-201ENST00000316407 K7EM74 188 aa6.79□□□□□ -1.32
USF3-201ENST00000316407 K7EQD1 137 aa6.79□□□□□ -1.32
USF3-201ENST00000316407 COX7A2LO14548 114 aa6.79□□□□□ -1.32
USF3-201ENST00000316407 CEMP1Q6PRD7 247 aaPredicted RBP6.79□□□□□ -1.32
USF3-201ENST00000316407 TMEM256-PLSCR3K7ERE1 68 aa6.79□□□□□ -1.32
USF3-201ENST00000316407 CAMK2N2Q96S95 79 aa6.79□□□□□ -1.32
USF3-201ENST00000316407 CENPVL3A0A0U1RRI6 287 aa6.79□□□□□ -1.32
USF3-201ENST00000316407 RETNQ9HD89 108 aa6.79□□□□□ -1.32
USF3-201ENST00000316407 GP9P14770 177 aa6.78□□□□□ -1.32
USF3-201ENST00000316407 H3BT86 120 aa6.78□□□□□ -1.32
USF3-201ENST00000316407 MIR7-3HGQ8N6C7 128 aa6.78□□□□□ -1.32
USF3-201ENST00000316407 PRR20EP86478 221 aa6.78□□□□□ -1.32
USF3-201ENST00000316407 PRR20CP86479 221 aa6.78□□□□□ -1.32
USF3-201ENST00000316407 PRR20DP86480 221 aa6.78□□□□□ -1.32
USF3-201ENST00000316407 PRR20BP86481 221 aa6.78□□□□□ -1.32
USF3-201ENST00000316407 PRR20AP86496 221 aa6.78□□□□□ -1.32
USF3-201ENST00000316407 HIST2H2BDQ6DRA6 164 aa6.78□□□□□ -1.32
USF3-201ENST00000316407 RNF166Q96A37 237 aaPredicted RBP6.78□□□□□ -1.32
USF3-201ENST00000316407 NOTCH2Q04721 2471 aa6.77□□□□□ -1.32
USF3-201ENST00000316407 NDUFA4O00483 81 aa6.77□□□□□ -1.33
USF3-201ENST00000316407 IGHV3-30P01768 117 aa6.77□□□□□ -1.33
USF3-201ENST00000316407 IGHV3-33P01772 117 aa6.77□□□□□ -1.33
USF3-201ENST00000316407 IGHV3-30-3P0DP02 117 aa6.77□□□□□ -1.33
USF3-201ENST00000316407 IGHV3-30-5P0DP03 117 aa6.77□□□□□ -1.33
USF3-201ENST00000316407 GATA3P23771 443 aa6.77□□□□□ -1.33
USF3-201ENST00000316407 LOXP28300 417 aaPredicted RBP6.77□□□□□ -1.33
USF3-201ENST00000316407 DEFB1P60022 68 aa6.77□□□□□ -1.33
USF3-201ENST00000316407 C16orf54Q6UWD8 224 aa6.77□□□□□ -1.33
USF3-201ENST00000316407 C2orf70A6NJV1 201 aa6.77□□□□□ -1.33
USF3-201ENST00000316407 TEX22C9J3V5 150 aa6.77□□□□□ -1.33
USF3-201ENST00000316407 E7EQL1 145 aa6.77□□□□□ -1.33
USF3-201ENST00000316407 RNF223E7ERA6 249 aa6.77□□□□□ -1.33
USF3-201ENST00000316407 HOXB4P17483 251 aaPredicted RBP6.77□□□□□ -1.33
USF3-201ENST00000316407 IL15RAQ13261 267 aa6.77□□□□□ -1.33
USF3-201ENST00000316407 LINC01356Q8N9X3 169 aa6.77□□□□□ -1.33
USF3-201ENST00000316407 ZFHX2Q9C0A1 2572 aaPredicted RBP6.77□□□□□ -1.33
USF3-201ENST00000316407 ELANEP08246 267 aa6.76□□□□□ -1.33
USF3-201ENST00000316407 POM121L12Q8N7R1 296 aa6.76□□□□□ -1.33
USF3-201ENST00000316407 LMO1P25800 156 aa6.76□□□□□ -1.33
USF3-201ENST00000316407 IGHV4-30-2A0A087WSY4 118 aa6.76□□□□□ -1.33
USF3-201ENST00000316407 SPRNQ5BIV9 151 aa6.76□□□□□ -1.33
USF3-201ENST00000316407 TRIAP1O43715 76 aa6.76□□□□□ -1.33
USF3-201ENST00000316407 CXCL5P42830 114 aa6.76□□□□□ -1.33
USF3-201ENST00000316407 P0DMU3 169 aa6.76□□□□□ -1.33
USF3-201ENST00000316407 FAM231AP0DMU4 169 aa6.76□□□□□ -1.33
USF3-201ENST00000316407 FAM231CP0DMU5 169 aa6.76□□□□□ -1.33
USF3-201ENST00000316407 JMJD7-PLA2G4BH0Y9G9 81 aa6.76□□□□□ -1.33
USF3-201ENST00000316407 CTSGP08311 255 aa6.76□□□□□ -1.33
USF3-201ENST00000316407 PRAC2D3DTV9 90 aa6.76□□□□□ -1.33
USF3-201ENST00000316407 MUC6Q6W4X9 2439 aa6.75□□□□□ -1.33
USF3-201ENST00000316407 C3orf84H3BNL1 204 aa6.75□□□□□ -1.33
USF3-201ENST00000316407 APOC4P55056 127 aa6.75□□□□□ -1.33
USF3-201ENST00000316407 PMAIP1Q13794 54 aa6.75□□□□□ -1.33
USF3-201ENST00000316407 MIAQ16674 131 aa6.75□□□□□ -1.33
USF3-201ENST00000316407 LTBP1Q14766 1721 aa6.75□□□□□ -1.33
USF3-201ENST00000316407 IGHV4-30-4P0DP06 118 aa6.75□□□□□ -1.33
USF3-201ENST00000316407 IGHV4-31P0DP07 118 aa6.75□□□□□ -1.33
USF3-201ENST00000316407 INSL3P51460 131 aa6.74□□□□□ -1.33
USF3-201ENST00000316407 USP17L23D6RBM5 183 aa6.74□□□□□ -1.33
USF3-201ENST00000316407 FGF23Q9GZV9 251 aaPredicted RBP6.74□□□□□ -1.33
USF3-201ENST00000316407 TRBV7-3A0A075B6L6 115 aa6.74□□□□□ -1.33
USF3-201ENST00000316407 IGLV3-19P01714 112 aa6.74□□□□□ -1.33
USF3-201ENST00000316407 FN1P02751 2386 aaKnown RBP6.74□□□□□ -1.33
USF3-201ENST00000316407 DEFB4AO15263 64 aa6.74□□□□□ -1.33
USF3-201ENST00000316407 CTRLP40313 264 aa6.74□□□□□ -1.33
USF3-201ENST00000316407 BPY2O14599 106 aa6.74□□□□□ -1.33
USF3-201ENST00000316407 PIFOQ8TCI5 191 aa6.74□□□□□ -1.33
USF3-201ENST00000316407 MRPS12O15235 138 aaKnown RBP6.74□□□□□ -1.33
USF3-201ENST00000316407 FAM167A-AS1Q96KT0 104 aa6.74□□□□□ -1.33
USF3-201ENST00000316407 LRRK2Q5S007 2527 aa6.74□□□□□ -1.33
USF3-201ENST00000316407 XGP55808 180 aa6.74□□□□□ -1.33
USF3-201ENST00000316407 SIRPDQ9H106 197 aa6.74□□□□□ -1.33
USF3-201ENST00000316407 RNF114Q9Y508 228 aa6.74□□□□□ -1.33
USF3-201ENST00000316407 GDF5OSQ5U4N7 250 aa6.73□□□□□ -1.33
USF3-201ENST00000316407 SLURP1P55000 103 aa6.73□□□□□ -1.33
USF3-201ENST00000316407 CASC2Q6XLA1 102 aa6.73□□□□□ -1.33
USF3-201ENST00000316407 MRPL36Q9P0J6 103 aaKnown RBP6.73□□□□□ -1.33
USF3-201ENST00000316407 IGHV1-69DA0A0B4J2H0 117 aa6.73□□□□□ -1.33
USF3-201ENST00000316407 IGHV1-69P01742 117 aa6.73□□□□□ -1.33
USF3-201ENST00000316407 UBE2AP49459 152 aa6.73□□□□□ -1.33
USF3-201ENST00000316407 RSPO1Q2MKA7 263 aaPredicted RBP6.73□□□□□ -1.33
USF3-201ENST00000316407 DIRC1Q969H9 104 aa6.73□□□□□ -1.33
USF3-201ENST00000316407 RMI2Q96E14 147 aa6.73□□□□□ -1.33
USF3-201ENST00000316407 CSRP1P21291 193 aaKnown RBP6.73□□□□□ -1.33
USF3-201ENST00000316407 A0A0J9YXY3 114 aa6.72□□□□□ -1.33
USF3-201ENST00000316407 MDFICQ9P1T7 246 aa6.72□□□□□ -1.33
USF3-201ENST00000316407 HIVEP2P31629 2446 aa6.72□□□□□ -1.33
USF3-201ENST00000316407 DCANP1Q8TF63 244 aa6.72□□□□□ -1.33
USF3-201ENST00000316407 GNLYP22749 145 aa6.72□□□□□ -1.33
USF3-201ENST00000316407 C22orf34Q6ZV56 151 aa6.72□□□□□ -1.33
USF3-201ENST00000316407 TMEM263Q8WUH6 116 aaKnown RBP6.72□□□□□ -1.33
USF3-201ENST00000316407 BLCAPP62952 87 aa6.72□□□□□ -1.33
USF3-201ENST00000316407 PSPHP1O15172 72 aa6.72□□□□□ -1.33
USF3-201ENST00000316407 CD59P13987 128 aa6.71□□□□□ -1.33
USF3-201ENST00000316407 MSMBP08118 114 aa6.71□□□□□ -1.33
USF3-201ENST00000316407 FOXL2NBQ6ZUU3 175 aa6.71□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms