RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 NDUFA1O15239 70 aa9.72□□□□□ -0.85
PTCD1-201ENST00000292478 C1orf229Q6ZS94 237 aaPredicted RBP9.72□□□□□ -0.85
PTCD1-201ENST00000292478 ETDCA0A1B0GVM5 59 aa9.72□□□□□ -0.85
PTCD1-201ENST00000292478 FRMD6-AS1P0C7T7 363 aa9.72□□□□□ -0.85
PTCD1-201ENST00000292478 Q6YL49 198 aa9.72□□□□□ -0.85
PTCD1-201ENST00000292478 TEN1Q86WV5 123 aa9.72□□□□□ -0.85
PTCD1-201ENST00000292478 MBD6Q96DN6 1003 aa9.72□□□□□ -0.85
PTCD1-201ENST00000292478 ZNF80P51504 273 aaPredicted RBP9.71□□□□□ -0.85
PTCD1-201ENST00000292478 CRYBA4P53673 196 aa9.71□□□□□ -0.85
PTCD1-201ENST00000292478 TAX1BP3O14907 124 aa9.71□□□□□ -0.86
PTCD1-201ENST00000292478 DYSFO75923 2080 aa9.7□□□□□ -0.86
PTCD1-201ENST00000292478 PRO0255Q9UI72 69 aa9.7□□□□□ -0.86
PTCD1-201ENST00000292478 DNAJC9-AS1A6NH13 148 aa9.7□□□□□ -0.86
PTCD1-201ENST00000292478 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.7□□□□□ -0.862e-6■■■□□ 19.1
PTCD1-201ENST00000292478 FUSP35637 526 aaKnown RBP eCLIP9.7□□□□□ -0.86
PTCD1-201ENST00000292478 C11orf71Q6IPW1 123 aa9.7□□□□□ -0.86
PTCD1-201ENST00000292478 LINC00322Q6ZN03 302 aaPredicted RBP9.7□□□□□ -0.86
PTCD1-201ENST00000292478 Q9HAA7 133 aa9.7□□□□□ -0.86
PTCD1-201ENST00000292478 A0A0B4J2C4 111 aa9.69□□□□□ -0.86
PTCD1-201ENST00000292478 K7EQG2 157 aa9.69□□□□□ -0.86
PTCD1-201ENST00000292478 H3BT86 120 aa9.69□□□□□ -0.86
PTCD1-201ENST00000292478 RPL18AQ02543 176 aaKnown RBP9.69□□□□□ -0.86
PTCD1-201ENST00000292478 NDUFA11Q86Y39 141 aa9.69□□□□□ -0.86
PTCD1-201ENST00000292478 IGHV3-30P01768 117 aa9.68□□□□□ -0.86
PTCD1-201ENST00000292478 IGHV3-33P01772 117 aa9.68□□□□□ -0.86
PTCD1-201ENST00000292478 IGHV3-30-3P0DP02 117 aa9.68□□□□□ -0.86
PTCD1-201ENST00000292478 IGHV3-30-5P0DP03 117 aa9.68□□□□□ -0.86
PTCD1-201ENST00000292478 JMJD7-PLA2G4BH0Y9G9 81 aa9.68□□□□□ -0.86
PTCD1-201ENST00000292478 DEFB1P60022 68 aa9.68□□□□□ -0.86
PTCD1-201ENST00000292478 IGLV10-54A0A075B6I4 117 aa9.68□□□□□ -0.86
PTCD1-201ENST00000292478 TRBV10-2A0A0K0K1G8 114 aa9.68□□□□□ -0.86
PTCD1-201ENST00000292478 C22orf34Q6ZV56 151 aa9.68□□□□□ -0.86
PTCD1-201ENST00000292478 TM2D2Q9BX73 214 aa9.68□□□□□ -0.86
PTCD1-201ENST00000292478 H7C423 109 aa9.67□□□□□ -0.86
PTCD1-201ENST00000292478 ALPK3Q96L96 1907 aa9.67□□□□□ -0.86
PTCD1-201ENST00000292478 NCOA6Q14686 2063 aaPredicted RBP9.67□□□□□ -0.86
PTCD1-201ENST00000292478 LINC01548A6NM66 108 aa9.67□□□□□ -0.86
PTCD1-201ENST00000292478 IGHV4-31P0DP07 118 aa9.67□□□□□ -0.86
PTCD1-201ENST00000292478 ZFAND3Q9H8U3 227 aa9.67□□□□□ -0.86
PTCD1-201ENST00000292478 SMIM9A6NGZ8 99 aa9.67□□□□□ -0.86
PTCD1-201ENST00000292478 C19orf84I3L1E1 186 aa9.67□□□□□ -0.86
PTCD1-201ENST00000292478 MRAPQ8TCY5 172 aa9.67□□□□□ -0.86
PTCD1-201ENST00000292478 NDUFS5O43920 106 aa9.66□□□□□ -0.86
PTCD1-201ENST00000292478 GDF5OSQ5U4N7 250 aa9.66□□□□□ -0.86
PTCD1-201ENST00000292478 TIRAPP58753 221 aa9.66□□□□□ -0.86
PTCD1-201ENST00000292478 TTTY13Q9BZ97 58 aa9.66□□□□□ -0.86
PTCD1-201ENST00000292478 SMAD5-AS1Q9Y6J3 95 aa9.66□□□□□ -0.86
PTCD1-201ENST00000292478 hADV29S1A0JD25 119 aa9.66□□□□□ -0.86
PTCD1-201ENST00000292478 SPAG11BQ08648 103 aa9.65□□□□□ -0.86
PTCD1-201ENST00000292478 DEFB135Q30KP9 77 aa9.65□□□□□ -0.86
PTCD1-201ENST00000292478 U3KQK5 164 aa9.65□□□□□ -0.86
PTCD1-201ENST00000292478 GOLGB1Q14789 3259 aaKnown RBP9.65□□□□□ -0.86
PTCD1-201ENST00000292478 MIAQ16674 131 aa9.65□□□□□ -0.87
PTCD1-201ENST00000292478 F8W735 103 aaPredicted RBP9.64□□□□□ -0.87
PTCD1-201ENST00000292478 DEFB114Q30KQ6 69 aa9.64□□□□□ -0.87
PTCD1-201ENST00000292478 DEFB105AQ8NG35 78 aa9.64□□□□□ -0.87
PTCD1-201ENST00000292478 YPEL4Q96NS1 127 aa9.64□□□□□ -0.87
PTCD1-201ENST00000292478 FOXI1Q12951 378 aa9.64□□□□□ -0.87
PTCD1-201ENST00000292478 Q8N6K4 173 aa9.64□□□□□ -0.87
PTCD1-201ENST00000292478 NEXN-AS1Q8NBZ9 246 aa9.64□□□□□ -0.87
PTCD1-201ENST00000292478 FREM1Q5H8C1 2179 aa9.63□□□□□ -0.87
PTCD1-201ENST00000292478 LYRM9A8MSI8 78 aa9.63□□□□□ -0.87
PTCD1-201ENST00000292478 MIR7-3HGQ8N6C7 128 aa9.63□□□□□ -0.87
PTCD1-201ENST00000292478 WFDC2Q14508 124 aa9.63□□□□□ -0.87
PTCD1-201ENST00000292478 C4orf48Q5BLP8 95 aa9.63□□□□□ -0.87
PTCD1-201ENST00000292478 Q6ZUT4 128 aa9.63□□□□□ -0.87
PTCD1-201ENST00000292478 NFE4Q86UQ8 179 aa9.62□□□□□ -0.87
PTCD1-201ENST00000292478 DAND5Q8N907 189 aa9.62□□□□□ -0.87
PTCD1-201ENST00000292478 DIRC1Q969H9 104 aa9.62□□□□□ -0.87
PTCD1-201ENST00000292478 PDE6GP18545 87 aa9.62□□□□□ -0.87
PTCD1-201ENST00000292478 C20orf173Q96LM9 149 aa9.62□□□□□ -0.87
PTCD1-201ENST00000292478 ATOX1O00244 68 aa9.62□□□□□ -0.87
PTCD1-201ENST00000292478 TP53TG3Q9ULZ0 132 aa9.61□□□□□ -0.87
PTCD1-201ENST00000292478 TMEM256-PLSCR3K7ERE1 68 aa9.61□□□□□ -0.87
PTCD1-201ENST00000292478 ESM1Q9NQ30 184 aa9.61□□□□□ -0.87
PTCD1-201ENST00000292478 KLK12Q9UKR0 248 aa9.61□□□□□ -0.87
PTCD1-201ENST00000292478 PCDH15Q96QU1 1955 aa9.61□□□□□ -0.87
PTCD1-201ENST00000292478 A0A0J9YXY3 114 aa9.61□□□□□ -0.87
PTCD1-201ENST00000292478 LECT2O14960 151 aa9.61□□□□□ -0.87
PTCD1-201ENST00000292478 ZFAND2AQ8N6M9 145 aa9.61□□□□□ -0.87
PTCD1-201ENST00000292478 CRIP1P50238 77 aa9.6□□□□□ -0.87
PTCD1-201ENST00000292478 NCR3O14931 201 aa9.6□□□□□ -0.87
PTCD1-201ENST00000292478 KLK5Q9Y337 293 aaPredicted RBP9.6□□□□□ -0.87
PTCD1-201ENST00000292478 PSMG3-AS1Q96PY0 264 aa9.59□□□□□ -0.87
PTCD1-201ENST00000292478 SPANXB1Q9NS25 103 aaPredicted RBP9.59□□□□□ -0.87
PTCD1-201ENST00000292478 CHD3Q12873 2000 aaKnown RBP9.59□□□□□ -0.87
PTCD1-201ENST00000292478 IGHV4-4A0A075B6R2 117 aa9.59□□□□□ -0.87
PTCD1-201ENST00000292478 Q6ZTI0 123 aa9.59□□□□□ -0.87
PTCD1-201ENST00000292478 CHKB-CPT1BH3BT56 60 aa9.59□□□□□ -0.87
PTCD1-201ENST00000292478 TMEM258P61165 79 aa9.59□□□□□ -0.87
PTCD1-201ENST00000292478 NREPQ16612 68 aa9.59□□□□□ -0.87
PTCD1-201ENST00000292478 IGLV2-11P01706 119 aa9.59□□□□□ -0.87
PTCD1-201ENST00000292478 UFSP1Q6NVU6 142 aa9.59□□□□□ -0.87
PTCD1-201ENST00000292478 SMIM20Q8N5G0 67 aa9.59□□□□□ -0.87
PTCD1-201ENST00000292478 TRBV6-5A0A0K0K1A5 114 aa9.58□□□□□ -0.88
PTCD1-201ENST00000292478 NDUFB1O75438 58 aa9.58□□□□□ -0.88
PTCD1-201ENST00000292478 PLA2G5P39877 138 aa9.58□□□□□ -0.88
PTCD1-201ENST00000292478 ZFHX2Q9C0A1 2572 aaPredicted RBP9.58□□□□□ -0.88
PTCD1-201ENST00000292478 RNF185Q96GF1 192 aa9.58□□□□□ -0.88
PTCD1-201ENST00000292478 G3V4G9 280 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms